Guide to the Human Genome
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Name: BCKDK Sequence: fasta or formatted (412aa) NCBI GI: 171906589
Description:

branched chain ketoacid dehydrogenase kinase isoform a

Referenced in:

Amino Acid Catabolism

Other entries for this name:
alt prot [365aa] branched chain ketoacid dehydrogenase kinase isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         32           3
 C cysteine            1.2          5           1
 D aspartate           6.6         27           2
 E glutamate           4.6         19           2
 F phenylalanine       3.6         15           1
 G glycine             6.8         28           3
 H histidine           4.9         20           2
 I isoleucine          6.8         28           2
 K lysine              4.1         17           2
 L leucine            11.9         49           2
 M methionine          2.7         11           2
 N asparagine          1.9          8           2
 P proline             5.8         24           2
 Q glutamine           3.4         14           2
 R arginine            8.5         35           2
 S serine              5.8         24           1
 T threonine           5.3         22           2
 V valine              4.9         20           2
 W tryptophan          0.2          1           1
 Y tyrosine            3.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   branched chain ketoacid dehydrogenase kinase isofor... 
BCKDK                 0.886   branched chain ketoacid dehydrogenase kinase isofor...
PDK2                  0.170   pyruvate dehydrogenase kinase 2 
PDK1                  0.166   pyruvate dehydrogenase kinase 1 
PDK4                  0.160   pyruvate dehydrogenase kinase 4 
PDK3                  0.155   pyruvate dehydrogenase kinase 3 isoform 1 
PDK3                  0.155   pyruvate dehydrogenase kinase 3 isoform 2 
LOC100130288          0.010   PREDICTED: hypothetical protein 
LOC100130288          0.009   PREDICTED: hypothetical protein 
LOC100130288          0.009   PREDICTED: hypothetical protein 
HCN2                  0.009   hyperpolarization activated cyclic nucleotide-gated...
POLR2B                0.009   DNA directed RNA polymerase II polypeptide B 
TRPM6                 0.007   transient receptor potential cation channel, subfami...
MYBPC3                0.006   myosin binding protein C, cardiac 
MEIS3                 0.005   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS1                 0.005   Meis homeobox 1 
SBK1                  0.005   SH3-binding kinase 1 
GNL3L                 0.005   guanine nucleotide binding protein-like 3 (nucleolar)...
DENND4B               0.005   DENN/MADD domain containing 4B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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