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Search of human proteins with 170784865
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|170784865 CAS1 domain containing 1 [Homo sapiens]
(797 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|170784865 CAS1 domain containing 1 [Homo sapiens] 1619 0.0
gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens] 40 0.007
gi|118722353 XK-related protein 5a [Homo sapiens] 35 0.27
gi|164519076 transmembrane 9 superfamily protein member 4 [Homo ... 34 0.47
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 34 0.61
gi|11181770 solute carrier family 6, member 20 isoform 1 [Homo s... 33 1.4
gi|117647230 hypothetical protein LOC54827 isoform 1 [Homo sapiens] 32 1.8
gi|117647228 hypothetical protein LOC54827 isoform 2 [Homo sapiens] 32 1.8
gi|29029605 purinergic receptor P2Y12 [Homo sapiens] 32 2.3
gi|12232483 purinergic receptor P2Y12 [Homo sapiens] 32 2.3
gi|53828705 olfactory receptor, family 5, subfamily J, member 2 ... 32 2.3
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 31 5.2
gi|90421313 cystic fibrosis transmembrane conductance regulator ... 31 5.2
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 31 5.2
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 5.2
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 5.2
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i... 30 6.8
gi|18375648 protein tyrosine phosphatase, non-receptor type 13 i... 30 6.8
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i... 30 6.8
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 30 6.8
>gi|170784865 CAS1 domain containing 1 [Homo sapiens]
Length = 797
Score = 1619 bits (4193), Expect = 0.0
Identities = 797/797 (100%), Positives = 797/797 (100%)
Query: 1 MAALAYNLGKREINHYFSVRSAKVLALVAVLLLAACHLASRRYRGNDSCEYLLSSGRFLG 60
MAALAYNLGKREINHYFSVRSAKVLALVAVLLLAACHLASRRYRGNDSCEYLLSSGRFLG
Sbjct: 1 MAALAYNLGKREINHYFSVRSAKVLALVAVLLLAACHLASRRYRGNDSCEYLLSSGRFLG 60
Query: 61 EKVWQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHEN 120
EKVWQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHEN
Sbjct: 61 EKVWQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHEN 120
Query: 121 IPFEDKTASVKVDFLWHPEVNGSMKQCIKVWTEDSIAKPHVIVAGAATWSIKIHNGSSEA 180
IPFEDKTASVKVDFLWHPEVNGSMKQCIKVWTEDSIAKPHVIVAGAATWSIKIHNGSSEA
Sbjct: 121 IPFEDKTASVKVDFLWHPEVNGSMKQCIKVWTEDSIAKPHVIVAGAATWSIKIHNGSSEA 180
Query: 181 LSQYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSIL 240
LSQYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSIL
Sbjct: 181 LSQYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSIL 240
Query: 241 NSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPVDG 300
NSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPVDG
Sbjct: 241 NSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPVDG 300
Query: 301 SCCQPRPPVTLIQKLAACFFTLSIIGYLIFYIIHRNAHRKNKPCTDLESGEEKKNIINTP 360
SCCQPRPPVTLIQKLAACFFTLSIIGYLIFYIIHRNAHRKNKPCTDLESGEEKKNIINTP
Sbjct: 301 SCCQPRPPVTLIQKLAACFFTLSIIGYLIFYIIHRNAHRKNKPCTDLESGEEKKNIINTP 360
Query: 361 VSSLEILLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENT 420
VSSLEILLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENT
Sbjct: 361 VSSLEILLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENT 420
Query: 421 KETKVLNREQTDEWKGWMQLVILIYHISGASTFLPVYMHIRVLVAAYLFQTGYGHFSYFW 480
KETKVLNREQTDEWKGWMQLVILIYHISGASTFLPVYMHIRVLVAAYLFQTGYGHFSYFW
Sbjct: 421 KETKVLNREQTDEWKGWMQLVILIYHISGASTFLPVYMHIRVLVAAYLFQTGYGHFSYFW 480
Query: 481 IKGDFGIYRVCQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQIIQ 540
IKGDFGIYRVCQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQIIQ
Sbjct: 481 IKGDFGIYRVCQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQIIQ 540
Query: 541 KKANGNCFWHFGLLLKLGFLLLFICFLAYSQGAFEKIFSLWPLSKCFELKGNVYEWWFRW 600
KKANGNCFWHFGLLLKLGFLLLFICFLAYSQGAFEKIFSLWPLSKCFELKGNVYEWWFRW
Sbjct: 541 KKANGNCFWHFGLLLKLGFLLLFICFLAYSQGAFEKIFSLWPLSKCFELKGNVYEWWFRW 600
Query: 601 RLDRYVVFHGMLFAFIYLALQKRQILSEGKGEPLFSNKISNFLLFISVVSFLTYSIWASS 660
RLDRYVVFHGMLFAFIYLALQKRQILSEGKGEPLFSNKISNFLLFISVVSFLTYSIWASS
Sbjct: 601 RLDRYVVFHGMLFAFIYLALQKRQILSEGKGEPLFSNKISNFLLFISVVSFLTYSIWASS 660
Query: 661 CKNKAECNELHPSVSVVQILAFILIRNIPGYARSVYSSFFAWFGKISLELFICQYHIWLA 720
CKNKAECNELHPSVSVVQILAFILIRNIPGYARSVYSSFFAWFGKISLELFICQYHIWLA
Sbjct: 661 CKNKAECNELHPSVSVVQILAFILIRNIPGYARSVYSSFFAWFGKISLELFICQYHIWLA 720
Query: 721 ADTRGILVLIPGNPMLNIIVSTFIFVCVAHEISQITNDLAQIIIPKDNSSLLKRLACIAA 780
ADTRGILVLIPGNPMLNIIVSTFIFVCVAHEISQITNDLAQIIIPKDNSSLLKRLACIAA
Sbjct: 721 ADTRGILVLIPGNPMLNIIVSTFIFVCVAHEISQITNDLAQIIIPKDNSSLLKRLACIAA 780
Query: 781 FFCGLLILSSIQDKSKH 797
FFCGLLILSSIQDKSKH
Sbjct: 781 FFCGLLILSSIQDKSKH 797
>gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]
Length = 1026
Score = 40.4 bits (93), Expect = 0.007
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 61 EKVWQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKH 118
E WQPH+C + + CL + I FIGDS R + Y ++ +N +E H
Sbjct: 744 EITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDSTNRGIMYYLIERLNETLQEWQKVH 801
>gi|118722353 XK-related protein 5a [Homo sapiens]
Length = 339
Score = 35.0 bits (79), Expect = 0.27
Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 47/235 (20%)
Query: 367 LLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENTKETKVL 426
LL + L +++ F + + L+ + + H S + +++L LGV+ L
Sbjct: 33 LLWGWLALAVLLPGFLVQALSYLWFRADGHPGHCSLMM--LHLLQLGVWKRHWDAALTSL 90
Query: 427 NREQTDEWKGWMQL--------------------VILIYHISGASTFLPVYMHIRVL--- 463
+E +GW+QL ++L ++ AS F + + L
Sbjct: 91 QKELEAPHRGWLQLQEADLSALRLLEALLQTGPHLLLQTYVFLASDFTDIVPGVSTLFSW 150
Query: 464 ------VAAYLFQTGY---GHFSYFWIKGDFGIYRVCQVLFRLNFLV--VVLCIVMDRPY 512
+ +Y G+ GH + W CQ L+R+ L V+ ++ + Y
Sbjct: 151 SSLSWALVSYTRFMGFMKPGHLAMPWAA------LFCQQLWRMGMLGTRVLSLVLFYKAY 204
Query: 513 QFYYFVPLVTVWFMVIYVTLALWPQIIQKKANGNCFWH-FGLLLKLGFLLLFICF 566
F+ FV W ++ + +A II + C W F LL+ ++L ++ F
Sbjct: 205 HFWVFVVAGAHWLVMTFWLVAQQSDII----DSTCHWRLFNLLVGAVYILCYLSF 255
>gi|164519076 transmembrane 9 superfamily protein member 4 [Homo
sapiens]
Length = 642
Score = 34.3 bits (77), Expect = 0.47
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 366 ILLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENTKETKV 425
IL+ S ++ ++M YF +C + N + S F Y+LV +FY N + +
Sbjct: 543 ILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAF----YVLVYAIFYFVN--KLDI 596
Query: 426 LNREQTDEWKGWMQLVIL-IYHISGASTFLPVYMHIRVLVAA 466
+ + + G+ L++L + ++G F YM +R + AA
Sbjct: 597 VEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAA 638
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 33.9 bits (76), Expect = 0.61
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 94 SRIRQLFYS----FVKIIN---PQFKEEGNKHENIPFEDKTASVKVDFLW---HPEVNGS 143
+ IRQ F S FV +++ KE+ N + E KT D+L +PE G
Sbjct: 193 ANIRQEFLSSLEGFVNVLSGAQESLKEKVNLRKCDILELKTLKEPTDYLTLANNPETLGK 252
Query: 144 MKQCIKVW---TEDSIAKPHVIVAGAATWSIKIHNGSSEALSQYKMNITSIAPLLEKLAK 200
++ C+KVW TE +A+ + ++ A G L +K ++ LLE+L K
Sbjct: 253 IEDCMKVWIKQTEQVLAENNQLLKEAD------DVGPRAELEHWKKRLSKFNYLLEQL-K 305
Query: 201 TSDVYWVL 208
+ DV VL
Sbjct: 306 SPDVKAVL 313
>gi|11181770 solute carrier family 6, member 20 isoform 1 [Homo
sapiens]
Length = 592
Score = 32.7 bits (73), Expect = 1.4
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 531 TLALWPQIIQKKANGNCFWHFGLLLKLGFLLLFICFLAYSQGAFEKIFSLWPLSKCFELK 590
TL + P + + NG W L L L +L++++C L ++ + ++ L C +
Sbjct: 153 TLNISPSL---QENGGVQWEPALCLLLAWLVVYLCILRGTESTGKVVYFTASLPYCVLI- 208
Query: 591 GNVYEWWFRWRLDRYVVFHGMLFAFIYLALQKRQILSEGKGEPLFSNKI--SNFLLFISV 648
+Y L R + HG +Y+ K + L+ K + +I S L F S+
Sbjct: 209 --IY-------LIRGLTLHGATNGLMYMFTPKIEQLANPKAWINAATQIFFSLGLGFGSL 259
Query: 649 VSFLTYSIWASSCKNKAECNELHPSVSVVQILAFILIRNIPGY 691
++F +Y+ +++C+ A L S + I A I+ +I G+
Sbjct: 260 IAFASYNEPSNNCQKHAIIVSLINSFT--SIFASIVTFSIYGF 300
>gi|117647230 hypothetical protein LOC54827 isoform 1 [Homo sapiens]
Length = 544
Score = 32.3 bits (72), Expect = 1.8
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 64 WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINP----QFKEEGNKHE 119
W P SC + K+ E CL K I +GDS IRQ F IN E G
Sbjct: 325 WNPVSCSLATVKMKE---CLRGKLIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQH 381
Query: 120 NIPFE-DKTASVKVDFLWHPEVNGSMKQCIK 149
+ + D+ +++ +P + GSM +K
Sbjct: 382 QLAVDLDRNINIQWQKYCYPLI-GSMTYSVK 411
>gi|117647228 hypothetical protein LOC54827 isoform 2 [Homo sapiens]
Length = 260
Score = 32.3 bits (72), Expect = 1.8
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 64 WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINP----QFKEEGNKHE 119
W P SC + K+ E CL K I +GDS IRQ F IN E G
Sbjct: 41 WNPVSCSLATVKMKE---CLRGKLIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQH 97
Query: 120 NIPFE-DKTASVKVDFLWHPEVNGSMKQCIK 149
+ + D+ +++ +P + GSM +K
Sbjct: 98 QLAVDLDRNINIQWQKYCYPLI-GSMTYSVK 127
>gi|29029605 purinergic receptor P2Y12 [Homo sapiens]
Length = 342
Score = 32.0 bits (71), Expect = 2.3
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 26/96 (27%)
Query: 480 WIKGDFGIY------RVCQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLA 533
++K +FG+ +CQV+F +NFL+V++C L+T YV
Sbjct: 177 FLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYT------------LITKELYRSYVRTR 224
Query: 534 LWPQIIQKKANGNCFWHFGLLLKLGFLLLFICFLAY 569
++ +KK N F + + FICF+ +
Sbjct: 225 GVGKVPRKKVNVKVF--------IIIAVFFICFVPF 252
>gi|12232483 purinergic receptor P2Y12 [Homo sapiens]
Length = 342
Score = 32.0 bits (71), Expect = 2.3
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 26/96 (27%)
Query: 480 WIKGDFGIY------RVCQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLA 533
++K +FG+ +CQV+F +NFL+V++C L+T YV
Sbjct: 177 FLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYT------------LITKELYRSYVRTR 224
Query: 534 LWPQIIQKKANGNCFWHFGLLLKLGFLLLFICFLAY 569
++ +KK N F + + FICF+ +
Sbjct: 225 GVGKVPRKKVNVKVF--------IIIAVFFICFVPF 252
>gi|53828705 olfactory receptor, family 5, subfamily J, member 2
[Homo sapiens]
Length = 312
Score = 32.0 bits (71), Expect = 2.3
Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 230 DAYNEAAVSILNSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNV 289
D + IL T +++ +F V +I T++ +L + L + + + + +
Sbjct: 4 DNFTVVTEFILLGLTDHAELKAVLFVVFLVIYAITLLRNLGMILLIQITSKLHTPMYFLL 63
Query: 290 YCNKILKPVDGSCCQPRPPVTLIQKLAACFFTLSIIGYLIF--------YIIHRNAHRK- 340
C + S P+ V L+ A F+ ++ +L F +++ A+ +
Sbjct: 64 SCLSFVDACYSSAIAPKMLVNLLVVKATISFSACMVQHLCFGVFITTEGFLLSVMAYDRY 123
Query: 341 --------------NKPCTDLESGEEKKNIINTPVSSLEILLQSFCKLGLIMAYFYMCDR 386
++ C +L +G I+NT + ++ + SFC+L + +F CD
Sbjct: 124 VAIVSPLLYTVAMSDRKCVELVTGSWIGGIVNTLIHTISLRRLSFCRLNAVSHFF--CDI 181
Query: 387 ANL 389
+L
Sbjct: 182 PSL 184
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 30.8 bits (68), Expect = 5.2
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 182 SQYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILN 241
S K NIT + P K A S +P + + N+K++ N + VS +N
Sbjct: 2380 SSLKQNITILIPETHKTATGSS-----DNPTKKPEVRTNKKLLKNND---HKGVVVSTIN 2431
Query: 242 SSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPVDGS 301
S +NV ++I ++ I + D L P+++R + ++ + + PV
Sbjct: 2432 FS-----TNVTAAKTKEMILKKLIRRTKDTLGAPKNNR-------ILIFIDDMNMPV-SD 2478
Query: 302 CCQPRPPVTLIQKL 315
+PP+ LI++L
Sbjct: 2479 MYGAQPPLELIRQL 2492
>gi|90421313 cystic fibrosis transmembrane conductance regulator [Homo
sapiens]
Length = 1480
Score = 30.8 bits (68), Expect = 5.2
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 487 IYRVCQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQIIQKKANGN 546
I+ Q+L + + V+ ++ +PY F VP++ + M+ L Q+ Q ++ G
Sbjct: 991 IFDFIQLLLIVIGAIAVVAVL--QPYIFVATVPVIVAFIMLRAYFLQTSQQLKQLESEGR 1048
Query: 547 C--FWHFGLLLKLGFLLLFICFLAYSQGAFEKIFSLWPLSKCFELKGNVYEWWFRWRLDR 604
F H LK + L Y + F K +L + L WF+ R++
Sbjct: 1049 SPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLR---WFQMRIE- 1104
Query: 605 YVVFHGMLFAFIYLALQKRQILSEGKGE 632
M+F ++A+ IL+ G+GE
Sbjct: 1105 ------MIFVIFFIAVTFISILTTGEGE 1126
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform
4 [Homo sapiens]
Length = 3321
Score = 30.8 bits (68), Expect = 5.2
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 183 QYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNS 242
QY+ + + L+E + + V + E +R +KI Y E S LNS
Sbjct: 266 QYEQEMKHLQQLIEGAHREIEDKPVATSNIQELQAQISRHEELAQKIKGYQEQIAS-LNS 324
Query: 243 S----TRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPV 298
T +K + +V+++ E LDG LP S + +++ C+ +L PV
Sbjct: 325 KCKMLTMKAKHATMLLTVTEVEGLAEGTEDLDGELLPTPSAHPSVVMMTAGRCHTLLSPV 384
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.8 bits (68), Expect = 5.2
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 183 QYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNS 242
QY+ + + L+E + + V + E +R +KI Y E S LNS
Sbjct: 5671 QYEQEMKHLQQLIEGAHREIEDKPVATSNIQELQAQISRHEELAQKIKGYQEQIAS-LNS 5729
Query: 243 S----TRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPV 298
T +K + +V+++ E LDG LP S + +++ C+ +L PV
Sbjct: 5730 KCKMLTMKAKHATMLLTVTEVEGLAEGTEDLDGELLPTPSAHPSVVMMTAGRCHTLLSPV 5789
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.8 bits (68), Expect = 5.2
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 183 QYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNS 242
QY+ + + L+E + + V + E +R +KI Y E S LNS
Sbjct: 5742 QYEQEMKHLQQLIEGAHREIEDKPVATSNIQELQAQISRHEELAQKIKGYQEQIAS-LNS 5800
Query: 243 S----TRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPV 298
T +K + +V+++ E LDG LP S + +++ C+ +L PV
Sbjct: 5801 KCKMLTMKAKHATMLLTVTEVEGLAEGTEDLDGELLPTPSAHPSVVMMTAGRCHTLLSPV 5860
>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
isoform 4 [Homo sapiens]
Length = 2490
Score = 30.4 bits (67), Expect = 6.8
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 206 WVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRNSKS----NVKMFSVSKLIA 261
++ +D +Y+D S+ ++I + +D +E A ++LN + S +KM KL
Sbjct: 2047 YIQEDDIYDD--SQEAEVIQS-LLDVVDEEAQNLLNENNAAGYSCGPGTLKMNG--KLSE 2101
Query: 262 QETIMESLDGLHLPESSRETTAMILMNVYCNKILK 296
+ T DG LPE E T M YC + +K
Sbjct: 2102 ERTEDTDCDGSPLPEYFTEATKMNGCEEYCEEKVK 2136
>gi|18375648 protein tyrosine phosphatase, non-receptor type 13
isoform 3 [Homo sapiens]
Length = 2294
Score = 30.4 bits (67), Expect = 6.8
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 206 WVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRNSKS----NVKMFSVSKLIA 261
++ +D +Y+D S+ ++I + +D +E A ++LN + S +KM KL
Sbjct: 1851 YIQEDDIYDD--SQEAEVIQS-LLDVVDEEAQNLLNENNAAGYSCGPGTLKMNG--KLSE 1905
Query: 262 QETIMESLDGLHLPESSRETTAMILMNVYCNKILK 296
+ T DG LPE E T M YC + +K
Sbjct: 1906 ERTEDTDCDGSPLPEYFTEATKMNGCEEYCEEKVK 1940
>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
isoform 1 [Homo sapiens]
Length = 2485
Score = 30.4 bits (67), Expect = 6.8
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 206 WVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRNSKS----NVKMFSVSKLIA 261
++ +D +Y+D S+ ++I + +D +E A ++LN + S +KM KL
Sbjct: 2042 YIQEDDIYDD--SQEAEVIQS-LLDVVDEEAQNLLNENNAAGYSCGPGTLKMNG--KLSE 2096
Query: 262 QETIMESLDGLHLPESSRETTAMILMNVYCNKILK 296
+ T DG LPE E T M YC + +K
Sbjct: 2097 ERTEDTDCDGSPLPEYFTEATKMNGCEEYCEEKVK 2131
>gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform
2 [Homo sapiens]
Length = 2466
Score = 30.4 bits (67), Expect = 6.8
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 206 WVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRNSKS----NVKMFSVSKLIA 261
++ +D +Y+D S+ ++I + +D +E A ++LN + S +KM KL
Sbjct: 2023 YIQEDDIYDD--SQEAEVIQS-LLDVVDEEAQNLLNENNAAGYSCGPGTLKMNG--KLSE 2077
Query: 262 QETIMESLDGLHLPESSRETTAMILMNVYCNKILK 296
+ T DG LPE E T M YC + +K
Sbjct: 2078 ERTEDTDCDGSPLPEYFTEATKMNGCEEYCEEKVK 2112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,699,041
Number of Sequences: 37866
Number of extensions: 1160296
Number of successful extensions: 3505
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3496
Number of HSP's gapped (non-prelim): 29
length of query: 797
length of database: 18,247,518
effective HSP length: 110
effective length of query: 687
effective length of database: 14,082,258
effective search space: 9674511246
effective search space used: 9674511246
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.