Guide to the Human Genome
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Name: FAM55D Sequence: fasta or formatted (260aa) NCBI GI: 117647228
Description:

hypothetical protein LOC54827 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {544aa} hypothetical protein LOC54827 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         10           1
 C cysteine            2.3          6           1
 D aspartate           5.0         13           1
 E glutamate           4.6         12           1
 F phenylalanine       3.5          9           1
 G glycine             4.6         12           2
 H histidine           3.5          9           1
 I isoleucine         10.8         28           2
 K lysine              6.9         18           1
 L leucine             7.7         20           3
 M methionine          3.8         10           1
 N asparagine          6.2         16           2
 P proline             3.1          8           2
 Q glutamine           4.2         11           1
 R arginine            4.6         12           2
 S serine              6.5         17           1
 T threonine           6.2         16           1
 V valine              6.5         17           2
 W tryptophan          1.9          5           1
 Y tyrosine            4.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54827 isoform 2 
FAM55D                1.000   hypothetical protein LOC54827 isoform 1 
FAM55A                0.561   hypothetical protein LOC120400 
FAM55B                0.514   hypothetical protein LOC120406 
FAM55C                0.247   hypothetical protein LOC91775 
FAM55C                0.247   hypothetical protein LOC91775 
C7orf58               0.020   hypothetical protein LOC79974 isoform 1 
CASD1                 0.014   CAS1 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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