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Search of human proteins with 169791013
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169791013 interferon, alpha 21 [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169791013 interferon, alpha 21 [Homo sapiens] 374 e-104
gi|10835103 interferon, alpha 4 [Homo sapiens] 343 4e-95
gi|10880985 interferon, alpha 17 [Homo sapiens] 340 4e-94
gi|4504589 interferon, alpha 10 [Homo sapiens] 340 6e-94
gi|4504597 interferon, alpha 5 [Homo sapiens] 333 7e-92
gi|71143135 interferon, alpha 7 [Homo sapiens] 327 3e-90
gi|4504593 interferon, alpha 16 [Homo sapiens] 318 2e-87
gi|170763491 interferon, alpha 14 [Homo sapiens] 309 8e-85
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 305 1e-83
gi|13128950 interferon, alpha 1 [Homo sapiens] 304 3e-83
gi|11128015 interferon, alpha 6 [Homo sapiens] 304 3e-83
gi|42476083 interferon, alpha 8 [Homo sapiens] 301 3e-82
gi|11067751 interferon, alpha 2 [Homo sapiens] 300 6e-82
gi|4504605 interferon, omega 1 [Homo sapiens] 206 1e-53
gi|28882045 interferon, epsilon [Homo sapiens] 100 7e-22
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 93 1e-19
gi|112789564 interferon kappa precursor [Homo sapiens] 78 5e-15
gi|34577120 mitochondrial translational release factor 1 [Homo s... 30 1.6
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 27 8.0
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 27 8.0
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 27 8.0
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 27 8.0
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 27 8.0
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 27 8.0
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 27 8.0
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 374 bits (960), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
Query: 181 FQERLRRKE 189
FQERLRRKE
Sbjct: 181 FQERLRRKE 189
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 343 bits (881), Expect = 4e-95
Identities = 174/189 (92%), Positives = 180/189 (95%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRIS FSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FP+EEFDG+QFQKAQAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLNDLE
Sbjct: 61 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQEVGVEETPLMN DSILAV+KYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 FQERLRRKE 189
Q+RLRRK+
Sbjct: 181 LQKRLRRKD 189
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 340 bits (872), Expect = 4e-94
Identities = 172/189 (91%), Positives = 178/189 (94%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
PQEEFDGNQFQK QAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLN+LE
Sbjct: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQEVG+EETPLMN DSILAV+KYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 FQERLRRKE 189
Q+ LRRK+
Sbjct: 181 LQKILRRKD 189
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 340 bits (871), Expect = 6e-94
Identities = 172/189 (91%), Positives = 177/189 (93%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRISPFSCLKDRHDF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
PQEEFDGNQFQKAQAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLNDLE
Sbjct: 61 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQEVGVEETPLMN DSILAV+KYFQRITLYL E+KYSPCAWEVVRAEIMRS S S
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 FQERLRRKE 189
Q+RLRRK+
Sbjct: 181 LQKRLRRKD 189
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 333 bits (853), Expect = 7e-92
Identities = 164/189 (86%), Positives = 178/189 (94%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRISPFSCLKDRHDFG
Sbjct: 1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATW+++LL+KF TEL QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
AC++QEVGVE+TPLMNVDSIL V+KYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLS
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
Query: 181 FQERLRRKE 189
QERLRRKE
Sbjct: 181 LQERLRRKE 189
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 327 bits (839), Expect = 3e-90
Identities = 166/189 (87%), Positives = 174/189 (92%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRISPFSCLKDRH+F
Sbjct: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FP+EEFDG+QFQK QAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLNDLE
Sbjct: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQEVGVEETPLMN D ILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 FQERLRRKE 189
++ LRRK+
Sbjct: 181 LKKGLRRKD 189
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 318 bits (814), Expect = 2e-87
Identities = 162/189 (85%), Positives = 170/189 (89%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRIS FSCLKDR+DFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQE FDGNQFQKAQAIS HEMIQQTFNLFSTKDSSA W+++LL+KF EL QQLNDLE
Sbjct: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACV QEVGVEE LMN DSILAV+KYFQRITLYL KKYSPCAWEVVRAEIMRSFS S
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 FQERLRRKE 189
Q+ LRRK+
Sbjct: 181 LQKGLRRKD 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 309 bits (792), Expect = 8e-85
Identities = 155/189 (82%), Positives = 170/189 (89%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RISPFSCLKDRHDF
Sbjct: 1 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFDGNQFQKAQAISVLHEM+QQTFNLFSTK+SSA W+++LLEKF EL QQ+NDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQEVGVEETPLMN DSILAVKKYFQRITLYL EKKYSPCAWEVVRAEIMRS S S
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 FQERLRRKE 189
Q+RLRRK+
Sbjct: 181 LQKRLRRKD 189
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 305 bits (782), Expect = 1e-83
Identities = 154/189 (81%), Positives = 166/189 (87%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MA F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDFG
Sbjct: 2 MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSSA W++ LL+KF TEL QQLNDLE
Sbjct: 62 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACV+QE V ETPLMN DSILAVKKYF+RITLYLTEKKYSPCAWEVVRAEIMRS SLS
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
Query: 181 FQERLRRKE 189
QERLRRKE
Sbjct: 182 LQERLRRKE 190
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 304 bits (778), Expect = 3e-83
Identities = 153/189 (80%), Positives = 165/189 (87%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MA F+LLM ++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDFG
Sbjct: 1 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSSA W++ LL+KF TEL QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACV+QE V ETPLMN DSILAVKKYF+RITLYLTEKKYSPCAWEVVRAEIMRS SLS
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180
Query: 181 FQERLRRKE 189
QERLRRKE
Sbjct: 181 LQERLRRKE 189
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 304 bits (778), Expect = 3e-83
Identities = 154/189 (81%), Positives = 168/189 (88%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDRHDF
Sbjct: 1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFDGNQFQKA+AISVLHE+IQQTFNLFSTKDSS W++ LL+K TEL QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACV+QEV V TPLMN DSILAV+KYFQRITLYLTEKKYSPCAWEVVRAEIMRSFS S+
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
Query: 181 FQERLRRKE 189
QERLRRKE
Sbjct: 181 LQERLRRKE 189
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 301 bits (770), Expect = 3e-82
Identities = 154/189 (81%), Positives = 170/189 (89%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL+F LL+A++VLSYKS SLGCDLPQTHSLGNRRALILLAQM RISPFSCLKDRHDF
Sbjct: 1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEFD QFQKAQAISVLHEMIQQTFNLFSTKDSSA +++LL++F EL+QQLNDLE
Sbjct: 61 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
+CV+QEVGV E+PLM DSILAV+KYFQRITLYLTEKKYS CAWEVVRAEIMRSFSLS
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
Query: 181 FQERLRRKE 189
Q+RL+ KE
Sbjct: 181 LQKRLKSKE 189
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 300 bits (767), Expect = 6e-82
Identities = 154/189 (81%), Positives = 167/189 (88%), Gaps = 1/189 (0%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDRHDFG
Sbjct: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQEEF GNQFQKA+ I VLHEMIQQ FNLFSTKDSSA W+++LL+KF TEL QQLNDLE
Sbjct: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
ACVIQ VGV ETPLM DSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSFSLS
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
Query: 181 FQERLRRKE 189
QE LR KE
Sbjct: 180 LQESLRSKE 188
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 206 bits (524), Expect = 1e-53
Identities = 107/189 (56%), Positives = 131/189 (69%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR DF
Sbjct: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
Query: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
FPQE G+Q QKA +SVLHEM+QQ F+LF T+ SSA W +LL++ T L+QQL LE
Sbjct: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
Query: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
C++Q VG E+ L +++YFQ I +YL EKKYS CAWEVVR EIM+S LS
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
Query: 181 FQERLRRKE 189
QERLR K+
Sbjct: 181 MQERLRSKD 189
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 100 bits (249), Expect = 7e-22
Identities = 58/155 (37%), Positives = 85/155 (54%)
Query: 34 NRRALILLAQMGRISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFST 93
N+ +L LL ++ +S CL R +F PQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
Query: 94 KDSSATWEQSLLEKFSTELNQQLNDLEACVIQEVGVEETPLMNVDSILAVKKYFQRITLY 153
S WE++ EKF +L+QQL LEA + E L + + L VK YF+RI Y
Sbjct: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
Query: 154 LTEKKYSPCAWEVVRAEIMRSFSLSKIFQERLRRK 188
L + YS CAW +V+ EI R E+L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 93.2 bits (230), Expect = 1e-19
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 52 CLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTE 111
CLKDR +F P+E QFQK A ++EM+Q F +F SS W ++++E
Sbjct: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
Query: 112 LNQQLNDLEACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEI 171
+ Q+N L+ + +++ E+ + S L +K+Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
Query: 172 MRSF 175
+R+F
Sbjct: 172 LRNF 175
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 77.8 bits (190), Expect = 5e-15
Identities = 62/203 (30%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 3 LSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRA----LILLAQMGRISPFSCLKDRHD 58
L +LM + + SL C+L H RR L L+ M P CL++
Sbjct: 12 LWLEILMGIFIAG---TLSLDCNLLNVHL---RRVTWQNLRHLSSMSNSFPVECLRENIA 65
Query: 59 FGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLND 118
F PQE Q K +EM Q FN+FS + + W++ L++ L+QQ
Sbjct: 66 FELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEY 124
Query: 119 LEACVIQEVGVEETPLMNVD-------------SILAVKKYFQRITLYLTEKKYSPCAWE 165
L C+ ++ E + S L +++YF RI +L EKKYS CAWE
Sbjct: 125 LNQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWE 184
Query: 166 VVRAEIMRSFSLSKIFQERLRRK 188
+VR EI R F RRK
Sbjct: 185 IVRVEIRRCLYYFYKFTALFRRK 207
>gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
Length = 445
Score = 29.6 bits (65), Expect = 1.6
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 52 CLKDRHDFGFPQEEFDGN-QFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFST 110
C H F Q D Q + +LH + + + +D+ W+ L+K+
Sbjct: 21 CHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRRYCHQDTKMLWKHKALQKYME 80
Query: 111 ELNQQLNDLEACVIQEVGVEE 131
L+++ LE C +Q + V E
Sbjct: 81 NLSKEYQTLEQC-LQHIPVNE 100
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 1775 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1822
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 439 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 486
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 442 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 489
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 1660 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1707
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 1779 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1826
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 1660 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1707
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELNQQLNDLEACVIQEVGVEETPL---MNVDSILAVKKYFQR 149
LE+F++++ + L LEA + Q V ++E MN D+ VK+ QR
Sbjct: 1783 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1830
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,251,597
Number of Sequences: 37866
Number of extensions: 240602
Number of successful extensions: 506
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 25
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.