Guide to the Human Genome
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Name: TMEM116 Sequence: fasta or formatted (245aa) NCBI GI: 24308398
Description:

transmembrane protein 116

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         15           1
 C cysteine            4.1         10           2
 D aspartate           2.0          5           1
 E glutamate           2.0          5           1
 F phenylalanine       6.9         17           2
 G glycine             4.5         11           1
 H histidine           2.9          7           1
 I isoleucine          5.3         13           2
 K lysine              4.5         11           2
 L leucine            12.7         31           3
 M methionine          3.3          8           1
 N asparagine          2.0          5           1
 P proline             4.9         12           2
 Q glutamine           6.5         16           1
 R arginine            3.3          8           2
 S serine              9.8         24           2
 T threonine           8.6         21           1
 V valine              6.1         15           1
 W tryptophan          1.2          3           1
 Y tyrosine            3.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 116 
EMR1                  0.017   egf-like module containing, mucin-like, hormone rece...
CPS1                  0.015   carbamoyl-phosphate synthetase 1 isoform c 
CPS1                  0.015   carbamoyl-phosphate synthetase 1 isoform a precurso...
CPS1                  0.015   carbamoyl-phosphate synthetase 1 isoform b precursor...
PTGER3                0.015   prostaglandin E receptor 3, subtype EP3 isoform 4 [H...
PTGER3                0.015   prostaglandin E receptor 3, subtype EP3 isoform 4 [H...
PTGER3                0.015   prostaglandin E receptor 3, subtype EP3 isoform 4 [...
MCHR1                 0.011   G protein-coupled receptor 24 
CLCN7                 0.011   chloride channel 7 isoform b 
CLCN7                 0.011   chloride channel 7 isoform a 
PTGER3                0.011   prostaglandin E receptor 3, subtype EP3 isoform 1 [H...
LOC100133915          0.011   PREDICTED: hypothetical protein 
GPR135                0.008   G protein-coupled receptor 135 
CYSLTR1               0.006   cysteinyl leukotriene receptor 1 
PTGER3                0.006   prostaglandin E receptor 3, subtype EP3 isoform 2 [H...
PTGER3                0.006   prostaglandin E receptor 3, subtype EP3 isoform 5 [H...
PTGER3                0.006   prostaglandin E receptor 3, subtype EP3 isoform 8 [H...
PTGER3                0.006   prostaglandin E receptor 3, subtype EP3 isoform 7 [H...
PTGER3                0.006   prostaglandin E receptor 3, subtype EP3 isoform 6 [H...
PTGER3                0.006   prostaglandin E receptor 3, subtype EP3 isoform 3 [H...
CAD                   0.006   carbamoylphosphate synthetase 2/aspartate transcarba...
ZNF486                0.006   zinc finger protein 486 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR-1G1 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR1-K1 
OPRM1                 0.006   opioid receptor, mu 1 isoform MOR-1B3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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