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Search of human proteins with 169217537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo
sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 444 e-125
gi|169208142 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 424 e-119
gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 401 e-112
gi|52485606 formin-like 2 [Homo sapiens] 48 7e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 7e-05
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 42 3e-04
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 42 3e-04
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 42 3e-04
gi|11415052 retinoid X receptor, beta [Homo sapiens] 42 4e-04
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 42 4e-04
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 42 4e-04
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 42 4e-04
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 42 5e-04
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 42 5e-04
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 42 5e-04
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 42 5e-04
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 41 6e-04
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 41 6e-04
gi|210032580 SET domain containing 1B [Homo sapiens] 41 6e-04
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 41 6e-04
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 41 8e-04
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 41 8e-04
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 41 8e-04
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 41 8e-04
gi|145207994 hairy and enhancer of split 7 [Homo sapiens] 41 8e-04
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 41 8e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 40 0.001
gi|40353727 synaptopodin isoform A [Homo sapiens] 40 0.001
gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo ... 40 0.001
gi|169174618 PREDICTED: family with sequence similarity 75, memb... 40 0.002
>gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 205
Score = 444 bits (1141), Expect = e-125
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG 60
MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG
Sbjct: 1 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG 60
Query: 61 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP 120
LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP
Sbjct: 61 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP 120
Query: 121 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 180
RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS
Sbjct: 121 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 180
Query: 181 RRSGVCRGADRRLWKLQGLPAGGCI 205
RRSGVCRGADRRLWKLQGLPAGGCI
Sbjct: 181 RRSGVCRGADRRLWKLQGLPAGGCI 205
>gi|169208142 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 205
Score = 424 bits (1091), Expect = e-119
Identities = 198/203 (97%), Positives = 199/203 (98%)
Query: 1 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG 60
MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHP ESTSVLLNWVIRALGPLVPPTEGG
Sbjct: 1 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPSESTSVLLNWVIRALGPLVPPTEGG 60
Query: 61 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP 120
LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPI SPDPAVSSAHSFPAP
Sbjct: 61 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 120
Query: 121 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 180
RLAWSCVL+SPLSLPLSK P LYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS
Sbjct: 121 RLAWSCVLYSPLSLPLSKPPALYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 180
Query: 181 RRSGVCRGADRRLWKLQGLPAGG 203
RRSGVCRGADRRLWKLQGLPAGG
Sbjct: 181 RRSGVCRGADRRLWKLQGLPAGG 203
>gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 347
Score = 401 bits (1030), Expect = e-112
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 20 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 79
AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP
Sbjct: 162 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 221
Query: 80 GEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL 139
GEPGSPLPASPHPPLQPPAFPDPPI SPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL
Sbjct: 222 GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL 281
Query: 140 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 199
PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL
Sbjct: 282 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 341
Query: 200 PAGGCI 205
PAGGCI
Sbjct: 342 PAGGCI 347
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 47.8 bits (112), Expect = 7e-06
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 51 GPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPA 110
GPL PP PL TPE + G P P PP PP P PP P P
Sbjct: 524 GPLPPPPP----------PLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPP 573
Query: 111 V--SSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSP 148
+ +A + PAP PL+ PL PPL T SP
Sbjct: 574 LPGPAAETVPAP----------PLAPPLPSAPPLPGTSSP 603
Score = 31.6 bits (70), Expect = 0.49
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 77 PEPGEPGSPLPASPHPPLQPPA---FPDPPIHSPDPAVSSAHSFPAPRLAWS 125
P P P P P P PPL PA P PP+ P P+ +P + ++
Sbjct: 557 PPPPPPPPPPPPPPPPPLPGPAAETVPAPPLAPPLPSAPPLPGTSSPTVVFN 608
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 44.3 bits (103), Expect = 7e-05
Identities = 55/186 (29%), Positives = 72/186 (38%), Gaps = 30/186 (16%)
Query: 2 RERPSGSAECQR----------------GRTGPKA-GWQLLPTARSPAQHPPESTSVLLN 44
R RPS QR R+GP A G P P+Q P+ L
Sbjct: 225 RRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPA--HPSQPKPKGLQALRP 282
Query: 45 WVIRALGPLVPPTEGGLWSDQVSWPLWEDVKT---PEPGEPGSPLPAS--PHPPLQPPAF 99
+ P G L S ++ P K P P +PLPA+ P PPL P
Sbjct: 283 PQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLP 342
Query: 100 PDPPIHSPDPAVSSAHSFPA--PRLAWSCVLHSPLSLP--LSKLPPLYLTHSPLRHQSTQ 155
PP S P++ + S PA P A + P+ P L +PP+ + HS L S Q
Sbjct: 343 LAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHS-LTSPSLQ 401
Query: 156 AQVPAP 161
A P+P
Sbjct: 402 AP-PSP 406
Score = 42.4 bits (98), Expect = 3e-04
Identities = 43/144 (29%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 5 PSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSD 64
PS +A + P A + P+A P Q PP + L + P PP
Sbjct: 697 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQ--VPPSPPASPPMSPSATPP 754
Query: 65 QVSWPLWEDVKTPEPGEPGSPLPASP---HPPLQPPAFPDPPIHS-PDPAVSSAHSFP-- 118
PL P P + LP SP PP PPA PP+ + P P S FP
Sbjct: 755 PRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPAS----FPGQ 810
Query: 119 APRLAWSCVLHSPLSLPLSKLPPL 142
AP + + SPL+ P + PP+
Sbjct: 811 APFSPSASLPMSPLATPPPQAPPV 834
Score = 40.0 bits (92), Expect = 0.001
Identities = 46/152 (30%), Positives = 60/152 (39%), Gaps = 31/152 (20%)
Query: 54 VPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSP--------LPASP-HPPLQ-PPAFPDPP 103
VPP + + P + TP P P SP LP+ P PP Q PP+ PP
Sbjct: 317 VPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPP 376
Query: 104 IHSPD-----PAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL--------PPLYLTHS--P 148
+ +P P + HS +P L P L LS L P L THS
Sbjct: 377 MQAPPSLQTIPPIQVPHSLTSPSLQ-----APPSPLALSSLQATTSLGSPTLQATHSFLT 431
Query: 149 LRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 180
+ + TQA + +P + T D Q PLS
Sbjct: 432 MSPRQTQASLTSPSRPAST-PPDSPPLQAPLS 462
Score = 37.4 bits (85), Expect = 0.009
Identities = 35/131 (26%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 18 PKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTP 77
P A + P+A P+Q PP + L VPP S S P+ P
Sbjct: 679 PPASPPVSPSATPPSQAPPSLAAPPLQ---------VPP------SPPASPPMSPSATPP 723
Query: 78 EPGEP---GSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 134
P PL P PP PP P P + +A P + + SPL+
Sbjct: 724 PQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAK 783
Query: 135 PLSKLPPLYLT 145
P + PP T
Sbjct: 784 PPPQAPPALAT 794
Score = 33.5 bits (75), Expect = 0.13
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 35 PPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP-GEPGSPLPASPHPP 93
PPE+ S + +A L P GL S +S + TP P P LP PP
Sbjct: 580 PPETPSSIATPPPQAPPALASPPLQGLPSPPLS-----PLATPPPQAPPXLALPPLQAPP 634
Query: 94 LQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSP 148
P + P P+ +P P AP +L +P S P S PP+ SP
Sbjct: 635 SPPASPPLSPLATPSP--------QAPNALAVHLLQAPFSPPPS--PPVQAPFSP 679
Score = 33.1 bits (74), Expect = 0.17
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 18 PKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPL---VPPTEGGLWSDQVSWPLWEDV 74
P+ L + PA PP+S + + A PL + P L S PL + +
Sbjct: 434 PRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPL-QAL 492
Query: 75 KTPEPGEPGSPLPASPHPPLQ------PPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVL 128
+ P +PL + PPL+ PP+ PP P + + S P L
Sbjct: 493 SSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQ---TA 549
Query: 129 HSPLSLPLSKLPP 141
+PL+ P + PP
Sbjct: 550 SAPLTTPHLETPP 562
Score = 32.0 bits (71), Expect = 0.38
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 21/109 (19%)
Query: 18 PKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTP 77
P A + P A P Q PP + LL VPP S S L + P
Sbjct: 815 PSASLPMSPLATPPPQAPPVLAAPLLQ---------VPP------SPPASPTLQAPRRPP 859
Query: 78 EPGE------PGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP 120
PG P L +P PP P P + PD A S+ + P
Sbjct: 860 TPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTP 908
Score = 30.0 bits (66), Expect = 1.4
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
Query: 33 QHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHP 92
Q PP S + + +L P PP + S ++ P E P P PL A P P
Sbjct: 524 QTPPASLTTPPLENLPSLAP--PPLQTA--SAPLTTPHLETPPCPAP----CPLQAPPSP 575
Query: 93 -----PLQPPAFPDPPIHSPDPAVSS--AHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLT 145
P P + PP +P PA++S P+P L+ P + P LPPL
Sbjct: 576 LTTPPPETPSSIATPPPQAP-PALASPPLQGLPSPPLS-PLATPPPQAPPXLALPPLQAP 633
Query: 146 HSP 148
SP
Sbjct: 634 PSP 636
Score = 30.0 bits (66), Expect = 1.4
Identities = 35/140 (25%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 18 PKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTP 77
P A L P A +P+ P + +V L + P P +S S P+ P
Sbjct: 636 PPASPPLSPLA-TPSPQAPNALAVHL--LQAPFSPPPSPPVQAPFSPPASPPVSPSATPP 692
Query: 78 EPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLS---- 133
P P PP P + P P +P P + P ++ S P+S
Sbjct: 693 SQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSAT 752
Query: 134 -----LPLSKLPPLYLTHSP 148
PL PPL + SP
Sbjct: 753 PPPRVPPLLAAPPLQVPPSP 772
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 42.4 bits (98), Expect = 3e-04
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLPASP-HPPLQPPAFPDPPIHSPDP 109
GLWS P K P P +P PLP +P PPL PP P PP+ P P
Sbjct: 20 GLWSPPPPLP---PRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRP 67
Score = 35.0 bits (79), Expect = 0.045
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSP----------DPAVSSAHSFPAPRLAWSC 126
P P P P P P PPL PP P PP SP P++S + LA S
Sbjct: 45 PNPPRPPLPPPRPPKPPLPPPRPPKPP--SPLGLAQSKVTLFPSISPSSMASLAALASSS 102
Query: 127 VLHS----PLSLPLSK 138
+L S PL P+S+
Sbjct: 103 LLKSTKPNPLEDPVSR 118
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 42.4 bits (98), Expect = 3e-04
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLPASP-HPPLQPPAFPDPPIHSPDP 109
GLWS P K P P +P PLP +P PPL PP P PP+ P P
Sbjct: 20 GLWSPPPPLP---PRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRP 67
Score = 35.0 bits (79), Expect = 0.045
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSP----------DPAVSSAHSFPAPRLAWSC 126
P P P P P P PPL PP P PP SP P++S + LA S
Sbjct: 45 PNPPRPPLPPPRPPKPPLPPPRPPKPP--SPLGLAQSKVTLFPSISPSSMASLAALASSS 102
Query: 127 VLHS----PLSLPLSK 138
+L S PL P+S+
Sbjct: 103 LLKSTKPNPLEDPVSR 118
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 42.4 bits (98), Expect = 3e-04
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLPASP-HPPLQPPAFPDPPIHSPDP 109
GLWS P K P P +P PLP +P PPL PP P PP+ P P
Sbjct: 20 GLWSPPPPLP---PRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRP 67
Score = 35.0 bits (79), Expect = 0.045
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSP----------DPAVSSAHSFPAPRLAWSC 126
P P P P P P PPL PP P PP SP P++S + LA S
Sbjct: 45 PNPPRPPLPPPRPPKPPLPPPRPPKPP--SPLGLAQSKVTLFPSISPSSMASLAALASSS 102
Query: 127 VLHS----PLSLPLSK 138
+L S PL P+S+
Sbjct: 103 LLKSTKPNPLEDPVSR 118
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 42.0 bits (97), Expect = 4e-04
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 77 PEPGEPGSPLPASPHPPL------QPPAFPDPPIHSPDPAVSSAHSFP 118
P P PG PLP S P L PP P PP+ SP P +SS+ P
Sbjct: 96 PPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSP 143
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 42.0 bits (97), Expect = 4e-04
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 22/199 (11%)
Query: 5 PSGSAECQRGRTGPKAGWQLLPTARSP-----AQHPPESTSVLLNWVIRALGPLVPPTEG 59
P + +GR GP AG +P ++ ++PP ++ V +P + G
Sbjct: 803 PYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPG 862
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLP-----ASPHPPLQPPAFPDPPIHSPDPAVSSA 114
+ + +P P+P +P P P ++ + P QP A P + P +SSA
Sbjct: 863 HMHTQVPPYP------QPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSA 916
Query: 115 HSFPAPRLAWSC--VLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYS---QTWE 169
S+ ++ SP S P + PP + + +H A P+ Y+ T
Sbjct: 917 SSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAP-PSSSAYALPPGTTG 975
Query: 170 GDDMKTQTPLSRRSGVCRG 188
++ P S+R+G G
Sbjct: 976 TLPAASELPASQRTGPQNG 994
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 42.0 bits (97), Expect = 4e-04
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 22/199 (11%)
Query: 5 PSGSAECQRGRTGPKAGWQLLPTARSP-----AQHPPESTSVLLNWVIRALGPLVPPTEG 59
P + +GR GP AG +P ++ ++PP ++ V +P + G
Sbjct: 764 PYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPG 823
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLP-----ASPHPPLQPPAFPDPPIHSPDPAVSSA 114
+ + +P P+P +P P P ++ + P QP A P + P +SSA
Sbjct: 824 HMHTQVPPYP------QPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSA 877
Query: 115 HSFPAPRLAWSC--VLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYS---QTWE 169
S+ ++ SP S P + PP + + +H A P+ Y+ T
Sbjct: 878 SSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAP-PSSSAYALPPGTTG 936
Query: 170 GDDMKTQTPLSRRSGVCRG 188
++ P S+R+G G
Sbjct: 937 TLPAASELPASQRTGPQNG 955
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 42.0 bits (97), Expect = 4e-04
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 22/199 (11%)
Query: 5 PSGSAECQRGRTGPKAGWQLLPTARSP-----AQHPPESTSVLLNWVIRALGPLVPPTEG 59
P + +GR GP AG +P ++ ++PP ++ V +P + G
Sbjct: 803 PYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPG 862
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLP-----ASPHPPLQPPAFPDPPIHSPDPAVSSA 114
+ + +P P+P +P P P ++ + P QP A P + P +SSA
Sbjct: 863 HMHTQVPPYP------QPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSA 916
Query: 115 HSFPAPRLAWSC--VLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYS---QTWE 169
S+ ++ SP S P + PP + + +H A P+ Y+ T
Sbjct: 917 SSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAP-PSSSAYALPPGTTG 975
Query: 170 GDDMKTQTPLSRRSGVCRG 188
++ P S+R+G G
Sbjct: 976 TLPAASELPASQRTGPQNG 994
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 69 PLWEDVKTPEPGEPGSPLPASPHPP-----LQPPAFPDPPIHSPDPAVSSAHSFPAPRLA 123
P W +P PG PGSP P+SP+ P + P P P + +P ++ +P +
Sbjct: 1563 PAW----SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAY--EPRSPGGYTPQSPSYS 1616
Query: 124 WSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
+ +SP S S P Y SP ++ + P YS T
Sbjct: 1617 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPT 1660
Score = 38.1 bits (87), Expect = 0.005
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 5 PSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSD 64
PS +++ G W PT SP P S + P+ GG S
Sbjct: 1548 PSAASDASGFSPGYSPAWS--PTPGSPGSPGPSSPYI--------------PSPGGAMSP 1591
Query: 65 QVS--WPLWEDVKTPEPGEPGSP--LPASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPA 119
S P +E ++P P SP P SP + P P P P +SP S ++S +
Sbjct: 1592 SYSPTSPAYEP-RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP---TSPSYSPTS 1647
Query: 120 PRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P + + +SP S S P Y SP ++ + P YS T
Sbjct: 1648 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1695
Score = 31.6 bits (70), Expect = 0.49
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 PGSPL--PASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P+SP + P P P P +SP S +S +P + + +SP S S
Sbjct: 1841 PTSPSYSPSSPEYTPTSPKYSPTSPKYSP---TSPKYSPTSPTYSPTTPKYSPTSPTYSP 1897
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P+Y SP ++ P YS T
Sbjct: 1898 TSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926
Score = 31.2 bits (69), Expect = 0.64
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 PGSP--LPASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P SP + P P P P ++P S +S +P + + +SP S S
Sbjct: 1750 PTSPNYTPTSPSYSPTSPSYSPTSPNYTP---TSPNYSPTSPSYSPTSPSYSPTSPSYSP 1806
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP S+ + P+ YS T
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPT 1835
Score = 31.2 bits (69), Expect = 0.64
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 82 PGSP--LPASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P SP + P P P P +SP S ++ +P S +SP S S
Sbjct: 1778 PTSPNYSPTSPSYSPTSPSYSPTSPSYSPS---SPRYTPQSPTYTPSSPSYSPSSPSYSP 1834
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP S+ P YS T
Sbjct: 1835 TSPKYTPTSPSYSPSSPEYTPTSPKYSPT 1863
Score = 31.2 bits (69), Expect = 0.64
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 PGSP--LPASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P SP + P P P P +SP S +S +P+ + + +SP + S
Sbjct: 1834 PTSPKYTPTSPSYSPSSPEYTPTSPKYSP---TSPKYSPTSPKYSPTSPTYSPTTPKYSP 1890
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP+ ++ P YS T
Sbjct: 1891 TSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1919
Score = 30.0 bits (66), Expect = 1.4
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 PGSP--LPASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P SP + P P P P +SP S ++S +PR ++P S S
Sbjct: 1771 PTSPNYTPTSPNYSPTSPSYSPTSPSYSP---TSPSYSPSSPRYTPQSPTYTPSSPSYSP 1827
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P+ Y+ T
Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPT 1856
Score = 29.6 bits (65), Expect = 1.9
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPD----PAVSSAHSFPAPRLAWSCVLHSPLSL 134
P SP + P P P P P +SP S +S +P+ + + +SP S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSP 1879
Query: 135 PLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
S P Y SP ++ P YS T
Sbjct: 1880 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Score = 29.3 bits (64), Expect = 2.4
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 82 PGSPL--PASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P SP + P P P P +SP S ++S +P + + +SP S +
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSP---TSPSYSPTSPSYSPTSPSYSPSSPRYTP 1813
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP S+ + P Y+ T
Sbjct: 1814 QSPTYTPSSPSYSPSSPSYSPTSPKYTPT 1842
Score = 28.9 bits (63), Expect = 3.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1723
Score = 28.9 bits (63), Expect = 3.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1701
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1702 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730
Score = 28.9 bits (63), Expect = 3.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1737
Score = 28.9 bits (63), Expect = 3.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1716 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744
Score = 28.5 bits (62), Expect = 4.2
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1723 TSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1751
Score = 28.5 bits (62), Expect = 4.2
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P P P P P ++P S ++S +P + +SP S S
Sbjct: 1813 PQSPTYTPSSPSYSPSSPSYSPTSPKYTP---TSPSYSPSSPEYTPTSPKYSPTSPKYSP 1869
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP +T P YS T
Sbjct: 1870 TSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ P YS T
Sbjct: 1737 TSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 82 PGSP--LPASP-HPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P SP + P P P P +SP S ++ +P + + +SP S S
Sbjct: 1743 PTSPNYSPTSPNYTPTSPSYSPTSPSYSP---TSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYS 165
P Y SP + P+ YS
Sbjct: 1800 TSPSYSPSSPRYTPQSPTYTPSSPSYS 1826
Score = 27.7 bits (60), Expect = 7.1
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P + + +SP S S
Sbjct: 1687 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1744 TSPNYSPTSPNYTPTSPSYSPTSPSYSPT 1772
Score = 27.7 bits (60), Expect = 7.1
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S ++S +P+ + +SP S +
Sbjct: 1799 PTSPSYSPSSPRYTPQSPTYTPSSPSYSPS---SPSYSPTSPKYTPTSPSYSPSSPEYTP 1855
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ P YS T
Sbjct: 1856 TSPKYSPTSPKYSPTSPKYSPTSPTYSPT 1884
Score = 27.7 bits (60), Expect = 7.1
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP P P P P P +SP S +S P+ + + +SP S +
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSPKYSP---TSPTYSPTTPKYSPTSPTYSPTSPVYTP 1904
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ P YS T
Sbjct: 1905 TSPKYSPTSPTYSPTSPKYSPTSPTYSPT 1933
Score = 27.3 bits (59), Expect = 9.3
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 82 PGSPLPASPHP---PLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 138
P SP + P P P P P +SP S +S +P + +SP S S
Sbjct: 1715 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771
Query: 139 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 167
P Y SP ++ + P YS T
Sbjct: 1772 TSPNYTPTSPNYSPTSPSYSPTSPSYSPT 1800
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 41.6 bits (96), Expect = 5e-04
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 5 PSGSAECQRGRTGPKAGWQLLPTARSP-----AQHPPESTSVLLNWVIRALGPLVPPTEG 59
P + +GR GP AG +P ++ ++PP ++ V +P + G
Sbjct: 803 PYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPG 862
Query: 60 GLWSDQVSWPLWEDVKTPEPGEPGSPLP-----ASPHPPLQPPAFPDPPIHSPDPAVSSA 114
+ + +P P+P +P P P ++ + P QP A P + P +SSA
Sbjct: 863 HMHTQVPPYP------QPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSA 916
Query: 115 HSFPAPRLAWSC--VLHSPLSLPLSKLPP 141
S+ ++ SP S P + PP
Sbjct: 917 SSYTGQSQLYAAQHQASSPTSSPATSFPP 945
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 41.6 bits (96), Expect = 5e-04
Identities = 43/164 (26%), Positives = 59/164 (35%), Gaps = 20/164 (12%)
Query: 4 RPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWS 63
RP+G + G+TG G +R+P+ P T GPL+PP L +
Sbjct: 110 RPAGQRDVAGGKTGQGPG------SRAPSPRLPNKT---------ISGPLIPPASPRLGN 154
Query: 64 DQVSWPLWEDVKT-PEPGEPGSPLPASPHPPLQPPAFPDPPIHSP---DPAVSSAHSFPA 119
+ P P P P P PPL PP PI +P P + + P
Sbjct: 155 TSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPV 214
Query: 120 PRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHL 163
C P P PPL S L ++ + Q+ HL
Sbjct: 215 VAPPVPCAPPPPPPPPPPTPPPL-PPASVLSDKAVKPQLAPLHL 257
Score = 30.0 bits (66), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 85 PLPASPHPPLQPPAFPDPPIHSPDPAVSSA 114
P+P P PPL P P PP+ +P P SA
Sbjct: 2 PVPPPPPPPLPP---PPPPLGAPPPPPPSA 28
Score = 29.3 bits (64), Expect = 2.4
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 23/108 (21%)
Query: 25 LPTARSPAQHPPEST-------SVLLNWVIRA-LGPL-VPPTEGGLWSDQVSWPLWEDVK 75
+P A P PP T SVL + ++ L PL +PP L PL
Sbjct: 219 VPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPL-------PLLPPCG 271
Query: 76 TPE-PGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRL 122
P EP SP + PP PP P PP S P S PAP L
Sbjct: 272 YPGLKAEPASPAQDAQEPPAPPP--PLPPYASCSPRA----SLPAPPL 313
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 41.6 bits (96), Expect = 5e-04
Identities = 54/198 (27%), Positives = 71/198 (35%), Gaps = 48/198 (24%)
Query: 16 TGPKAGWQLLPTARSPAQHPPESTSVLLN-----WVIRALGPLVPPTEGGLWSDQVSW-- 68
+G + + LP +P+ PP ++ LN W LVP G + S
Sbjct: 195 SGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASSSP 254
Query: 69 ----PLWE--DVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRL 122
PL+ D TP P P + LPA P P QPP VSSA
Sbjct: 255 PSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPP-------------VSSA-------- 293
Query: 123 AWSCVLHSPLSL-PLSKLP-------PLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMK 174
+H PL L PL P P +L S L + P P T +G +
Sbjct: 294 ----TMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPP--PSTLQGRRPR 347
Query: 175 TQTPLSRRSGVCRGADRR 192
Q P + S R + RR
Sbjct: 348 AQAPSASHSSSLRPSQRR 365
Score = 38.9 bits (89), Expect = 0.003
Identities = 49/161 (30%), Positives = 58/161 (36%), Gaps = 38/161 (23%)
Query: 4 RPSGSAECQRGRTGPKAGWQLLPTARSPAQHP---PESTSVLLNWVIRALGPLVPPTEGG 60
RP GR GP+ + P A +P P PE + +L V+ LG PT G
Sbjct: 368 RPPTVFRLLEGR-GPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGL---PTPGP 423
Query: 61 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQP-------------PAFPDPPIHSP 107
SD L D P P S P P P+QP P P PP S
Sbjct: 424 SHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASK 483
Query: 108 DPAVSSAHSFPAPRLAWSCVLHSPL------SLPLSKLPPL 142
P V P+P VL SP + P LPPL
Sbjct: 484 APVV------PSP------VLQSPSEGLGMGAGPACPLPPL 512
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 41.2 bits (95), Expect = 6e-04
Identities = 46/160 (28%), Positives = 61/160 (38%), Gaps = 30/160 (18%)
Query: 14 GRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG-----LWSDQVSW 68
G G +A P S + H P + + L PL P L S
Sbjct: 124 GEVGERA-----PDGASQSSHEPMEDAAPI------LSPLASPDPQAKHPQDLASTPSPG 172
Query: 69 PLWEDVKTPEPGEPGSPLPASPHPPLQPPA-FPDPPIHSPDPAVSS---AHSFPAPRLAW 124
P+ V + +P P HP +PPA FP PP H+PDP S F AP L
Sbjct: 173 PMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPP-HTPDPLACSPPPPKGFTAPPLRD 231
Query: 125 SCVLH----SPLSLPLSKLPPLYLTHSPLRHQSTQAQVPA 160
S ++ ++LPL +P S H+ A VPA
Sbjct: 232 STLITPSHCDSVALPLGTVP-----QSLSPHEDLVASVPA 266
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 41.2 bits (95), Expect = 6e-04
Identities = 46/160 (28%), Positives = 61/160 (38%), Gaps = 30/160 (18%)
Query: 14 GRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG-----LWSDQVSW 68
G G +A P S + H P + + L PL P L S
Sbjct: 124 GEVGERA-----PDGASQSSHEPMEDAAPI------LSPLASPDPQAKHPQDLASTPSPG 172
Query: 69 PLWEDVKTPEPGEPGSPLPASPHPPLQPPA-FPDPPIHSPDPAVSS---AHSFPAPRLAW 124
P+ V + +P P HP +PPA FP PP H+PDP S F AP L
Sbjct: 173 PMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPP-HTPDPLACSPPPPKGFTAPPLRD 231
Query: 125 SCVLH----SPLSLPLSKLPPLYLTHSPLRHQSTQAQVPA 160
S ++ ++LPL +P S H+ A VPA
Sbjct: 232 STLITPSHCDSVALPLGTVP-----QSLSPHEDLVASVPA 266
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 41.2 bits (95), Expect = 6e-04
Identities = 42/141 (29%), Positives = 51/141 (36%), Gaps = 28/141 (19%)
Query: 36 PESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQ 95
P + +V V+ PL PP +P P P +PG P+P PPL
Sbjct: 664 PGAAAVAAPSVLAPTLPLPPPP---------GFPPLPPPPPPPPPQPGFPMP----PPLP 710
Query: 96 PPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQ 155
PP P PP H PAV+ P P A V P+ PL PP
Sbjct: 711 PPPPPPPPAH---PAVTVP---PPPLPAPPGVPPPPILPPLPPFPPGLF---------PV 755
Query: 156 AQVPAPHLYSQTWEGDDMKTQ 176
QV H+ W G M Q
Sbjct: 756 MQVDMSHVLGGQWGGMPMSFQ 776
Score = 34.7 bits (78), Expect = 0.058
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 81 EPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAH--SFPAPRLAWSCVLHSP 131
EP LP PPL PP P PP P+P + A S P LA H+P
Sbjct: 1269 EPPMMLPLPLQPPLPPPRPPRPPSPPPEPETTDASHPSVPPEPLAEDHPPHTP 1321
Score = 30.8 bits (68), Expect = 0.84
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 51 GPLVPPTEGG-------LWSDQVSWPLWEDVKTPEP-----GEPGSPLPASPHPPLQPPA 98
GPLV P G L Q P++ P G P P P PP PP
Sbjct: 1491 GPLVRPPAGAALGRELLLLPGQPQTPVFPSTHDPRTVTLDFRNAGIPAPPPPLPPQPPPP 1550
Query: 99 FPDPPI 104
P PP+
Sbjct: 1551 PPPPPV 1556
Score = 27.3 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 69 PLWEDVKTPEPGEPGSPLPA-----SPHPPLQP-PAFPDPPIHSPDPAVSSAHS 116
PL + P P P SP P + HP + P P D P H+P S A S
Sbjct: 1277 PLQPPLPPPRPPRPPSPPPEPETTDASHPSVPPEPLAEDHPPHTPGLCGSLAKS 1330
Score = 27.3 bits (59), Expect = 9.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 74 VKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPR 121
+ P P P P P P PP++P P + + P+ + P PR
Sbjct: 1536 IPAPPPPLPPQPPPPPPPPPVEPTKLPFKELDNQWPSEAIP---PGPR 1580
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 41.2 bits (95), Expect = 6e-04
Identities = 46/160 (28%), Positives = 61/160 (38%), Gaps = 30/160 (18%)
Query: 14 GRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG-----LWSDQVSW 68
G G +A P S + H P + + L PL P L S
Sbjct: 124 GEVGERA-----PDGASQSSHEPMEDAAPI------LSPLASPDPQAKHPQDLASTPSPG 172
Query: 69 PLWEDVKTPEPGEPGSPLPASPHPPLQPPA-FPDPPIHSPDPAVSS---AHSFPAPRLAW 124
P+ V + +P P HP +PPA FP PP H+PDP S F AP L
Sbjct: 173 PMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPP-HTPDPLACSPPPPKGFTAPPLRD 231
Query: 125 SCVLH----SPLSLPLSKLPPLYLTHSPLRHQSTQAQVPA 160
S ++ ++LPL +P S H+ A VPA
Sbjct: 232 STLITPSHCDSVALPLGTVP-----QSLSPHEDLVASVPA 266
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 40.8 bits (94), Expect = 8e-04
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPL 136
P P EP SP A P P + PAFP P + +P+ + S+A + P P + S P
Sbjct: 1125 PTPEEPASPAAAVPTP--EEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAES 1182
Query: 137 SKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWE 169
+ + T S A VP P T E
Sbjct: 1183 ASFAAVVATLE--EPTSPAASVPTPAAMVATLE 1213
Score = 36.2 bits (82), Expect = 0.020
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 31/136 (22%)
Query: 16 TGPKAGWQLLPTARSPAQ------HPPESTSVLLNWVIRALGPLVPPTEGG---LWSDQV 66
T P A +PT+ PA +P E TS A+ L PT L +++
Sbjct: 1216 TSPAAS---VPTSEEPASLAAAVSNPEEPTSPAA-----AVPTLEEPTSSAAAVLTPEEL 1267
Query: 67 SWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSC 126
S P P P EP SP A + L+ PA P + +P+ A A S P P +
Sbjct: 1268 SSPA---ASVPTPEEPASPAAAVSN--LEEPASPAAAVPTPEVAAIPAASVPTPEVP--- 1319
Query: 127 VLHSPLSLPLSKLPPL 142
++P + +PP+
Sbjct: 1320 ------AIPAAAVPPM 1329
Score = 34.7 bits (78), Expect = 0.058
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPL 136
P P EP SP A+ PP + P P + +P+ S A + P P S P P
Sbjct: 1021 PTPEEPTSP--AAAVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVP--TPE 1076
Query: 137 SKLPPLYLTHSPLRHQSTQAQVPAP 161
P +P S A VP P
Sbjct: 1077 EPTSPAAAVPTPEEPTSPAAAVPTP 1101
Score = 32.3 bits (72), Expect = 0.29
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP 120
P P EP SP A P P + PA P + +P+ S A + P P
Sbjct: 1099 PTPEEPTSPAAAVPTP--EEPASPAAAVPTPEEPASPAAAVPTP 1140
Score = 32.3 bits (72), Expect = 0.29
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 77 PEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPL 136
P P EP SP A P P + PA P + +P+ A + P P + S + P P
Sbjct: 1112 PTPEEPASPAAAVPTP--EEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVP--TPE 1167
Query: 137 SKLPPLYLTHSPLRHQSTQAQV 158
P +P S A V
Sbjct: 1168 ESASPAAAVPTPAESASFAAVV 1189
Score = 31.2 bits (69), Expect = 0.64
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 74 VKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLS 133
V+ P EP SP A+ P + P P + +P+ S A + P P S P
Sbjct: 992 VRVSTPEEPASP--AAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPPEEPTSPAAAVP-- 1047
Query: 134 LPLSKLPPLYLTHSPLRHQSTQAQVPAP 161
P P +P S A VP P
Sbjct: 1048 TPEEPTSPAAAVPTPEEPTSPAAAVPTP 1075
Score = 28.9 bits (63), Expect = 3.2
Identities = 36/147 (24%), Positives = 47/147 (31%), Gaps = 33/147 (22%)
Query: 26 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSP 85
P A P P S + A+ P PT P P P EP SP
Sbjct: 1016 PAAAVPTPEEPTSPAA-------AVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSP 1068
Query: 86 L-----------PASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 134
PA+ P + P P + +P+ S A + P P P S
Sbjct: 1069 AAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTP--------EEPAS- 1119
Query: 135 PLSKLPPLYLTHSPLRHQSTQAQVPAP 161
P + +P +P S A VP P
Sbjct: 1120 PAAAVP------TPEEPASPAAAVPTP 1140
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 79 PGEPGSPLPASPH--PPLQPPAFPDP----PIHSP--DPAVSSAHSFPAP 120
PGEP S +PA+P PPLQPP PDP P HS D A SS+ S P
Sbjct: 798 PGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPP 847
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 79 PGEPGSPLPASPH--PPLQPPAFPDP----PIHSP--DPAVSSAHSFPAP 120
PGEP S +PA+P PPLQPP PDP P HS D A SS+ S P
Sbjct: 798 PGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPP 847
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 40.8 bits (94), Expect = 8e-04
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 79 PGEPGSPLPASPH--PPLQPPAFPDP----PIHSP--DPAVSSAHSFPAP 120
PGEP S +PA+P PPLQPP PDP P HS D A SS+ S P
Sbjct: 798 PGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPP 847
>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
Length = 225
Score = 40.8 bits (94), Expect = 8e-04
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 75 KTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 134
K P P +P P P +P P L P A P P V H P+PR AWS L SP +
Sbjct: 129 KPPRP-KPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGH--PSPRCAWSPSLCSPRAG 185
Query: 135 PLSKLPPL--YLTHSPLRHQ---STQAQVPAPHLYSQTW 168
PL L P H+ + +A +P P + + W
Sbjct: 186 DSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPW 224
Score = 28.5 bits (62), Expect = 4.2
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 26 PTARSPAQHPPESTSVLLNWVIRALGPLV---PPTEGGLWSDQVSWPLWEDVKTPEPGEP 82
P P P + L+ ALGP + PP G S + +W + +P G+
Sbjct: 130 PPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAWS--PSLCSPRAGDS 187
Query: 83 GSPLPAS--------PHPPLQPPAFPDPP 103
G+P P + PH P P PP
Sbjct: 188 GAPAPLTGLLPPPPPPHRQDGAPKAPLPP 216
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 40.8 bits (94), Expect = 8e-04
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 14 GRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWED 73
G G +A P S + H P + + ++ + P + L S P+
Sbjct: 124 GEVGERA-----PDGASQSSHEPMEDAAPILSLLASPDPQAKHPQD-LASTPSPGPMTTS 177
Query: 74 VKTPEPGEPGSPLPASPHPPLQPPA-FPDPPIHSPDPAVSS---AHSFPAPRLAWSCVLH 129
V + +P P HP +PPA FP PP H+PDP S F AP L S ++
Sbjct: 178 VSSLSASQPPEPSLPLEHPSPEPPALFPHPP-HTPDPLACSLPPPKGFTAPPLRDSTLIT 236
Query: 130 ----SPLSLPLSKLPPLYLTHSPLRHQSTQAQVPA 160
++LPL +P S H+ A VPA
Sbjct: 237 PSHCDSVALPLGTVP-----QSLSPHEDLVASVPA 266
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 40.4 bits (93), Expect = 0.001
Identities = 40/125 (32%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 51 GPLVPPTEGGLWSDQVSWPLWEDVKTPEP--------GEPG-SPLPASPHPPLQ---PPA 98
GP PP G + ++ P + P P G+P PLP P PP+ PP
Sbjct: 248 GPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPP 307
Query: 99 FPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQV 158
P PP P P FP PR PL PL+ PP +L P A
Sbjct: 308 GPPPPQQGPPPPPG---PFP-PRPP------GPLGPPLTLAPPPHLPGPP-----PGAPP 352
Query: 159 PAPHL 163
PAPH+
Sbjct: 353 PAPHV 357
Score = 32.3 bits (72), Expect = 0.29
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 79 PGEPGSPLPAS---PHPPLQPPAFPDPP 103
PG P P PA P PPL PP P PP
Sbjct: 223 PGGPPPPFPAGQTPPRPPLGPPGPPGPP 250
Score = 31.2 bits (69), Expect = 0.64
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 19/79 (24%)
Query: 68 WPLWEDVKTPEPGEPGSPLPASPHPPLQ--PPAFPDPPIHS---PDPAVSSAHSFPAPRL 122
+P + P G PG P P P PP Q PP PP P P + F P
Sbjct: 230 FPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQP-- 287
Query: 123 AWSCVLHSPLSLPLSKLPP 141
PL LPP
Sbjct: 288 ------------PLGPLPP 294
Score = 30.8 bits (68), Expect = 0.84
Identities = 30/100 (30%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 14 GRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWED 73
G P G+ P P Q PP + R GPL PP
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPPPPPGP---FPPRPPGPLGPPL---------------- 335
Query: 74 VKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSS 113
P P PG P A P P PAF PP +S P S
Sbjct: 336 TLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDS 375
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 29/138 (21%)
Query: 35 PPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDV------KTPEPGEPGS--PL 86
PP S S W R++ PL P TE S Q+ L ++ K+ P G+ P
Sbjct: 726 PPMSPS----WSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENPR 781
Query: 87 PASPH---PPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLY 143
P SP PP PP P P + SP PA + + P A +P S LP
Sbjct: 782 PFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFA---------PIPRSPLPA-- 830
Query: 144 LTHSPLRHQSTQAQVPAP 161
P S ++ +PAP
Sbjct: 831 ---GPSSCTSPRSPLPAP 845
Score = 27.3 bits (59), Expect = 9.3
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 7 GSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALG----------PLVPP 56
G Q P G + P + S A P + ++ R G P PP
Sbjct: 628 GQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSPP 687
Query: 57 TEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPP 97
G S W +P P EPG S PPL PP
Sbjct: 688 WTPGASRPPSSLDGWV---SPGPWEPGRGSSMSSPPPLPPP 725
>gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo
sapiens]
Length = 220
Score = 40.0 bits (92), Expect = 0.001
Identities = 42/151 (27%), Positives = 52/151 (34%), Gaps = 37/151 (24%)
Query: 46 VIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGS------------PLPASPHPP 93
V+R +VPP G V P D P PG P S P P SP
Sbjct: 76 VLRVGAKVVPPP--GSPDSVVPPPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPPGSPDSV 133
Query: 94 LQPPAFPD---PPIHSPD-------------PAVSSAHSFPAPRLAWSCVLHSPLSLPLS 137
+ PP PD PP SPD PA + A P W V PL+
Sbjct: 134 VLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRV-------PLA 186
Query: 138 KLPPLYLTHSPLRHQSTQAQVPAPHLYSQTW 168
+ PP + P Q ++V L +W
Sbjct: 187 RSPPQVPSRPPSLSQPLSSRVSLYELLFPSW 217
Score = 31.2 bits (69), Expect = 0.64
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 27 TARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGS-- 84
+++ P P S + L + V+ L T + + V P D P P P S
Sbjct: 45 SSKFPTNTLPWSKNALFSKVVFIRVHLCKSTVLRVGAKVVPPPGSPDSVVPPPRSPDSVV 104
Query: 85 PLPASPHPPLQPPAFPD---PPIHSPDPAV 111
P P SP + PP PD PP SPD V
Sbjct: 105 PPPGSPDSVVLPPRSPDSVVPPPGSPDSVV 134
>gi|169174618 PREDICTED: family with sequence similarity 75, member
A4 isoform 2 [Homo sapiens]
Length = 1272
Score = 39.7 bits (91), Expect = 0.002
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 30/160 (18%)
Query: 14 GRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG-----LWSDQVSW 68
G G +A P S + H P + + L PL P L S
Sbjct: 49 GEVGERA-----PDGASQSSHEPMEDAAPI------LSPLASPDPQAKHPQDLASTPSPG 97
Query: 69 PLWEDVKTPEPGEPGSPLPASPHPPLQPPA-FPDPPIHSPDPAVSS---AHSFPAPRLAW 124
P+ V + +P P HP +PPA FP PP H+PDP S F AP L
Sbjct: 98 PMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPP-HTPDPLACSLPPPKGFTAPPLRD 156
Query: 125 SCVLH----SPLSLPLSKLPPLYLTHSPLRHQSTQAQVPA 160
S ++ ++ PL +P S H+ A VPA
Sbjct: 157 STLITPSHCDSVAFPLGTVP-----QSLSPHEDLVASVPA 191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,617,050
Number of Sequences: 37866
Number of extensions: 864155
Number of successful extensions: 10412
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 699
Number of HSP's that attempted gapping in prelim test: 5586
Number of HSP's gapped (non-prelim): 3690
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.