Guide to the Human Genome
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Name: MEST Sequence: fasta or formatted (335aa) NCBI GI: 29294639
Description:

mesoderm specific transcript isoform a

Referenced in:

Stem Cells and Early Development

Other entries for this name:
alt prot [326aa] mesoderm specific transcript isoform b
alt prot [326aa] mesoderm specific transcript isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         12           2
 C cysteine            0.3          1           1
 D aspartate           4.5         15           2
 E glutamate           3.6         12           1
 F phenylalanine       6.0         20           2
 G glycine             7.2         24           2
 H histidine           3.6         12           2
 I isoleucine          6.3         21           1
 K lysine              3.6         12           2
 L leucine            14.0         47           3
 M methionine          1.8          6           1
 N asparagine          3.6         12           2
 P proline             6.9         23           3
 Q glutamine           3.3         11           1
 R arginine            8.1         27           3
 S serine              7.5         25           2
 T threonine           3.3         11           1
 V valine              6.0         20           2
 W tryptophan          2.4          8           2
 Y tyrosine            4.8         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mesoderm specific transcript isoform a 
MEST                  0.976   mesoderm specific transcript isoform b 
MEST                  0.976   mesoderm specific transcript isoform b 
EPHX3                 0.034   abhydrolase domain containing 9 
EPHX3                 0.034   abhydrolase domain containing 9 
EPHX4                 0.033   abhydrolase domain containing 7 
EPHX2                 0.025   epoxide hydrolase 2, cytoplasmic 
EPHX1                 0.022   epoxide hydrolase 1 
EPHX1                 0.022   epoxide hydrolase 1 
ABHD14A               0.022   abhydrolase domain containing 14A 
USP13                 0.010   ubiquitin thiolesterase 13 
FAM108A5              0.010   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.010   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.010   PREDICTED: hypothetical protein LOC729495 
ABHD5                 0.007   abhydrolase domain containing 5 
SLC36A2               0.007   solute carrier family 36, member 2 
LOC100131530          0.007   PREDICTED: hypothetical protein 
LOC100131530          0.007   PREDICTED: hypothetical protein 
LOC100131530          0.007   PREDICTED: hypothetical protein 
ABHD8                 0.006   abhydrolase domain containing 8 
ABHD6                 0.004   abhydrolase domain containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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