Guide to the Human Genome
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Name: LOC100132509 Sequence: fasta or formatted (188aa) NCBI GI: 169215160
Description:

PREDICTED: similar to hCG2001192

Not currently referenced in the text

Other entries for this name:
alt prot {188aa} PREDICTED: similar to hCG2001192
alt prot {188aa} PREDICTED: hypothetical protein LOC100132509
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          7           1
 C cysteine            3.7          7           1
 D aspartate           2.7          5           1
 E glutamate           5.3         10           1
 F phenylalanine       3.7          7           1
 G glycine             4.8          9           1
 H histidine           8.0         15           2
 I isoleucine          5.9         11           1
 K lysine             11.2         21           2
 L leucine             4.3          8           1
 M methionine          2.7          5           1
 N asparagine          8.0         15           2
 P proline             3.2          6           1
 Q glutamine           3.7          7           1
 R arginine            3.2          6           1
 S serine             10.1         19           2
 T threonine           6.4         12           2
 V valine              4.3          8           1
 W tryptophan          1.6          3           1
 Y tyrosine            3.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2001192 
LOC100132509          0.992   PREDICTED: similar to hCG2001192 
LOC100132509          0.987   PREDICTED: hypothetical protein LOC100132509 
LOC100132598          0.929   PREDICTED: similar to zinc finger protein 165 [Homo...
LOC100132598          0.926   PREDICTED: similar to zinc finger protein 165 [Homo...
ZNF114                0.539   zinc finger protein 114 
ZNF214                0.200   zinc finger protein 214 
ZNF559                0.200   zinc finger protein 559 
ZFP37                 0.200   zinc finger protein 37 homolog 
ZNF317                0.197   zinc finger protein 317 
ZNF79                 0.189   zinc finger protein 79 
ZNF254                0.189   zinc finger protein 254 
ZNF43                 0.189   zinc finger protein 43 
ZNF91                 0.187   zinc finger protein 91 
ZNF555                0.187   zinc finger protein 555 
ZNF558                0.184   zinc finger protein 558 
ZNF480                0.184   zinc finger protein 480 
ZNF836                0.182   zinc finger protein 836 
ZNF790                0.182   zinc finger protein 790 
ZNF329                0.182   zinc finger protein 329 
ZNF502                0.182   zinc finger protein 502 
ZNF502                0.182   zinc finger protein 502 
ZNF502                0.182   zinc finger protein 502 
ZNF502                0.182   zinc finger protein 502 
ZNF347                0.182   zinc finger protein 347 
ZNF135                0.182   zinc finger protein 135 
ZNF534                0.182   zinc finger protein 534 isoform 2 
ZNF534                0.182   zinc finger protein 534 isoform 1 
ZNF436                0.182   zinc finger protein 436 
ZNF658                0.182   zinc finger protein 658 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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