Search of human proteins with 111548652

Search of human proteins with 111548652

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo
sapiens]
         (746 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo sapiens]  1502   0.0  
gi|111548654 hypothetical protein LOC51057 isoform 1 [Homo sapiens]  1164   0.0  
gi|75709220 cleavage stimulation factor subunit 1 [Homo sapiens]       34   0.57 
gi|4557491 cleavage stimulation factor subunit 1 [Homo sapiens]        34   0.57 
gi|75709217 cleavage stimulation factor subunit 1 [Homo sapiens]       34   0.57 
gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens]                  34   0.57 
gi|206597470 neural precursor cell expressed, developmentally do...    33   0.74 
gi|206597468 neural precursor cell expressed, developmentally do...    33   0.74 
gi|23097254 neural precursor cell expressed, developmentally dow...    33   0.74 
gi|206597465 neural precursor cell expressed, developmentally do...    33   0.74 
gi|116089276 tetratricopeptide repeat domain 23-like [Homo sapiens]    32   1.6  
gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo sa...    32   2.1  
gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo sa...    32   2.1  
gi|4506067 protein kinase C, alpha [Homo sapiens]                      31   3.7  
gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]           31   3.7  
gi|33188443 microfilament and actin filament cross-linker protei...    31   3.7  
gi|33188445 microfilament and actin filament cross-linker protei...    31   3.7  
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]         31   4.8  
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]         31   4.8  
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]         31   4.8  
gi|223005862 echinoderm microtubule associated protein like 6 [H...    30   6.2  
gi|221316624 dystonin isoform 4 [Homo sapiens]                         30   6.2  
gi|221316622 dystonin isoform 3 [Homo sapiens]                         30   6.2  
gi|221316618 dystonin isoform 2 [Homo sapiens]                         30   6.2  
gi|34577047 dystonin isoform 1 [Homo sapiens]                          30   6.2  
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]              30   6.2  

>gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo sapiens]
          Length = 746

 Score = 1502 bits (3888), Expect = 0.0
 Identities = 746/746 (100%), Positives = 746/746 (100%)

Query: 1   MRREFCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIY 60
           MRREFCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIY
Sbjct: 1   MRREFCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIY 60

Query: 61  QYYDKKDPPATEHGNLEKKQKLAESRDYPWTLKNRRPEKLRDSLKELEELMQNSRCVLSK 120
           QYYDKKDPPATEHGNLEKKQKLAESRDYPWTLKNRRPEKLRDSLKELEELMQNSRCVLSK
Sbjct: 61  QYYDKKDPPATEHGNLEKKQKLAESRDYPWTLKNRRPEKLRDSLKELEELMQNSRCVLSK 120

Query: 121 WKNKYVCQLLFGSGVLVSLSLSGPQLEKVVIDRSLVGKLISDTISDALLTDSFIILSFLA 180
           WKNKYVCQLLFGSGVLVSLSLSGPQLEKVVIDRSLVGKLISDTISDALLTDSFIILSFLA
Sbjct: 121 WKNKYVCQLLFGSGVLVSLSLSGPQLEKVVIDRSLVGKLISDTISDALLTDSFIILSFLA 180

Query: 181 QNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPINKTTERHLAINCVHDRVVC 240
           QNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPINKTTERHLAINCVHDRVVC
Sbjct: 181 QNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPINKTTERHLAINCVHDRVVC 240

Query: 241 WWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRTEWDPLDVRFGTKQPYQVF 300
           WWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRTEWDPLDVRFGTKQPYQVF
Sbjct: 241 WWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRTEWDPLDVRFGTKQPYQVF 300

Query: 301 TVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSS 360
           TVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSS
Sbjct: 301 TVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSS 360

Query: 361 LILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDR 420
           LILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDR
Sbjct: 361 LILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDR 420

Query: 421 LPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGV 480
           LPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGV
Sbjct: 421 LPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGV 480

Query: 481 FTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFISMSAIVNHLLRQKLTPER 540
           FTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFISMSAIVNHLLRQKLTPER
Sbjct: 481 FTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFISMSAIVNHLLRQKLTPER 540

Query: 541 EAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLLRYQRFEKAFLLAVDVGAR 600
           EAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLLRYQRFEKAFLLAVDVGAR
Sbjct: 541 EAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLLRYQRFEKAFLLAVDVGAR 600

Query: 601 DLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLGPLDRGDMLNEAFIGLSLA 660
           DLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLGPLDRGDMLNEAFIGLSLA
Sbjct: 601 DLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLGPLDRGDMLNEAFIGLSLA 660

Query: 661 PQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRNELEKDICSGFLMTNTCNAED 720
           PQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRNELEKDICSGFLMTNTCNAED
Sbjct: 661 PQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRNELEKDICSGFLMTNTCNAED 720

Query: 721 GELREDGREQEIRDGGSLKMIHFGLV 746
           GELREDGREQEIRDGGSLKMIHFGLV
Sbjct: 721 GELREDGREQEIRDGGSLKMIHFGLV 746


>gi|111548654 hypothetical protein LOC51057 isoform 1 [Homo sapiens]
          Length = 587

 Score = 1164 bits (3010), Expect = 0.0
 Identities = 580/584 (99%), Positives = 582/584 (99%)

Query: 163 TISDALLTDSFIILSFLAQNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPIN 222
           ++  ALLTDSFIILSFLAQNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPIN
Sbjct: 4   SLHSALLTDSFIILSFLAQNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPIN 63

Query: 223 KTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRT 282
           KTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRT
Sbjct: 64  KTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRT 123

Query: 283 EWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAIS 342
           EWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAIS
Sbjct: 124 EWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAIS 183

Query: 343 CCRNVTEDKLILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQ 402
           CCRNVTEDKLILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQ
Sbjct: 184 CCRNVTEDKLILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQ 243

Query: 403 IFDMALSPINIQLLAEDRLPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLL 462
           IFDMALSPINIQLLAEDRLPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLL
Sbjct: 244 IFDMALSPINIQLLAEDRLPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLL 303

Query: 463 FLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFI 522
           FLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFI
Sbjct: 304 FLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFI 363

Query: 523 SMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLL 582
           SMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLL
Sbjct: 364 SMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPLLDSTILEYRDQISKYARRFFHHLL 423

Query: 583 RYQRFEKAFLLAVDVGARDLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLG 642
           RYQRFEKAFLLAVDVGARDLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLG
Sbjct: 424 RYQRFEKAFLLAVDVGARDLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLG 483

Query: 643 PLDRGDMLNEAFIGLSLAPQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRNEL 702
           PLDRGDMLNEAFIGLSLAPQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRNEL
Sbjct: 484 PLDRGDMLNEAFIGLSLAPQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRNEL 543

Query: 703 EKDICSGFLMTNTCNAEDGELREDGREQEIRDGGSLKMIHFGLV 746
           EKDICSGFLMTNTCNAEDGELREDGREQEIRDGGSLKMIHFGLV
Sbjct: 544 EKDICSGFLMTNTCNAEDGELREDGREQEIRDGGSLKMIHFGLV 587


>gi|75709220 cleavage stimulation factor subunit 1 [Homo sapiens]
          Length = 431

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 348 TEDKLILGCEDSSLILYE-----THRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQ 402
           TE  L  G  D +L L++       R    + + E+L S IS HPSG  +LVG+    L+
Sbjct: 184 TEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRS-ISFHPSGDFILVGTQHPTLR 242

Query: 403 IFDM 406
           ++D+
Sbjct: 243 LYDI 246


>gi|4557491 cleavage stimulation factor subunit 1 [Homo sapiens]
          Length = 431

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 348 TEDKLILGCEDSSLILYE-----THRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQ 402
           TE  L  G  D +L L++       R    + + E+L S IS HPSG  +LVG+    L+
Sbjct: 184 TEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRS-ISFHPSGDFILVGTQHPTLR 242

Query: 403 IFDM 406
           ++D+
Sbjct: 243 LYDI 246


>gi|75709217 cleavage stimulation factor subunit 1 [Homo sapiens]
          Length = 431

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 348 TEDKLILGCEDSSLILYE-----THRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQ 402
           TE  L  G  D +L L++       R    + + E+L S IS HPSG  +LVG+    L+
Sbjct: 184 TEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRS-ISFHPSGDFILVGTQHPTLR 242

Query: 403 IFDM 406
           ++D+
Sbjct: 243 LYDI 246


>gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens]
          Length = 217

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 47  KNTLHIADRDIGIYQYYDKKDPPATEHGNLEKKQKLAESRDYPWTLKNRRPEKLRDSLKE 106
           KN+    + D+G  Q   K DPPATE   LE+K KL E             EK + +L +
Sbjct: 34  KNSGQNLEEDMG--QSEQKADPPATEKTLLEEKVKLEEQ-------LKETVEKYKRALAD 84

Query: 107 LEELMQNSRCVLSKWK 122
            E L Q S+ ++ + K
Sbjct: 85  TENLRQRSQKLVEEAK 100


>gi|206597470 neural precursor cell expressed, developmentally
           down-regulated 1 isoform c [Homo sapiens]
          Length = 571

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 358 DSSLILYETHRRV---TLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMAL--SPIN 412
           D  +ILY+T  +    TL+A T L  + +   P GA L +GS++G++  +D+ +  SP+ 
Sbjct: 139 DKRIILYDTSSKKLVKTLVADTPL--TAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVK 196

Query: 413 IQLLAEDRLPRETLQFSKLFDASS 436
                +  +     Q+S +   SS
Sbjct: 197 TISAHKTSVQCIAFQYSTVLTKSS 220


>gi|206597468 neural precursor cell expressed, developmentally
           down-regulated 1 isoform b [Homo sapiens]
          Length = 660

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 358 DSSLILYETHRRV---TLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMAL--SPIN 412
           D  +ILY+T  +    TL+A T L  + +   P GA L +GS++G++  +D+ +  SP+ 
Sbjct: 228 DKRIILYDTSSKKLVKTLVADTPL--TAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVK 285

Query: 413 IQLLAEDRLPRETLQFSKLFDASS 436
                +  +     Q+S +   SS
Sbjct: 286 TISAHKTSVQCIAFQYSTVLTKSS 309


>gi|23097254 neural precursor cell expressed, developmentally
           down-regulated 1 isoform b [Homo sapiens]
          Length = 660

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 358 DSSLILYETHRRV---TLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMAL--SPIN 412
           D  +ILY+T  +    TL+A T L  + +   P GA L +GS++G++  +D+ +  SP+ 
Sbjct: 228 DKRIILYDTSSKKLVKTLVADTPL--TAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVK 285

Query: 413 IQLLAEDRLPRETLQFSKLFDASS 436
                +  +     Q+S +   SS
Sbjct: 286 TISAHKTSVQCIAFQYSTVLTKSS 309


>gi|206597465 neural precursor cell expressed, developmentally
           down-regulated 1 isoform a [Homo sapiens]
          Length = 667

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 358 DSSLILYETHRRV---TLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMAL--SPIN 412
           D  +ILY+T  +    TL+A T L  + +   P GA L +GS++G++  +D+ +  SP+ 
Sbjct: 235 DKRIILYDTSSKKLVKTLVADTPL--TAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVK 292

Query: 413 IQLLAEDRLPRETLQFSKLFDASS 436
                +  +     Q+S +   SS
Sbjct: 293 TISAHKTSVQCIAFQYSTVLTKSS 316


>gi|116089276 tetratricopeptide repeat domain 23-like [Homo sapiens]
          Length = 361

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 76  LEKKQKLAESRDYPWTLKNRRPE------KLRDSLKELEELMQNSRCVLSKWKNKYVCQL 129
           LE   KL  +    W L+NR  E      K   ++KEL+EL +   C L   +N     L
Sbjct: 160 LEALVKLYYTLGVAWLLQNRGREAYFNLQKAERNMKELKELYKGGVCELQVSENDLTLAL 219

Query: 130 LFGSGVLVSLSLSGPQLEKVVID-RSLVGKLISDTISDALLTDSFIILSFLAQNKLCFIQ 188
              S  +  L+L+    EK + D  +  G   SD IS   L +    +  L +N    IQ
Sbjct: 220 GRASLAIHRLNLALAYFEKAIGDVIAAKGDRTSDLIS---LYEEAAQIEQLRRNHNQAIQ 276

Query: 189 FTKKMES------SDVNKRLEKLSALDYKIF 213
           + ++  S      ++V+ +  ++SAL  K +
Sbjct: 277 YLQQAHSVCVSLFTEVSPKTAEMSALLAKAY 307


>gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo
           sapiens]
          Length = 687

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 174 IILSFLAQNKLCFIQFTKKME-----SSDVNKRLEKLSALDYKIFYYEIPGPINKTTERH 228
           II +FL +N  CF Q T K++     S+     L+  S  D  +F+  +    ++  ERH
Sbjct: 372 IIRTFLKEN--CFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERH 429

Query: 229 LAINCVHDRVVCWW 242
             +  +H+++  +W
Sbjct: 430 KIVKEIHEQLKAFW 443


>gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo
           sapiens]
          Length = 719

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 174 IILSFLAQNKLCFIQFTKKME-----SSDVNKRLEKLSALDYKIFYYEIPGPINKTTERH 228
           II +FL +N  CF Q T K++     S+     L+  S  D  +F+  +    ++  ERH
Sbjct: 372 IIRTFLKEN--CFRQSTAKIQIVRGGSTAKGTALKTGSDADLVVFHNSLKSYTSQKNERH 429

Query: 229 LAINCVHDRVVCWW 242
             +  +H+++  +W
Sbjct: 430 KIVKEIHEQLKAFW 443


>gi|4506067 protein kinase C, alpha [Homo sapiens]
          Length = 672

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 24  RQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIYQYYDKKDPPATEHGNLEKKQKLA 83
           R  R+ F   +SF ++EL          + +++ G  +YY+   P   E GN+E +QK  
Sbjct: 249 RTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEG--EYYNVPIPEGDEEGNMELRQKFE 306

Query: 84  ESR 86
           +++
Sbjct: 307 KAK 309


>gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]
          Length = 428

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 437 SLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKL-----GVFTRGQLGLIDI 491
           S VQ+ W+A   + Q+G G    D + L +ERG  G ++F        V      G +DI
Sbjct: 110 STVQVSWLA---LIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDI 166

Query: 492 I 492
           +
Sbjct: 167 V 167


>gi|33188443 microfilament and actin filament cross-linker protein
            isoform b [Homo sapiens]
          Length = 5938

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 5544 WLLALERQRKLNDALDRLEELKEFANFDFDVWRKKYM 5580


>gi|33188445 microfilament and actin filament cross-linker protein
            isoform a [Homo sapiens]
          Length = 5430

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 5042 WLLALERQRKLNDALDRLEELKEFANFDFDVWRKKYM 5078


>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
          Length = 1805

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 310 KEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYETHRR 369
           K+    SC  EC+R    C   T    + +      N   + L  GC+  S+++ E+  +
Sbjct: 31  KKAPVKSCT-ECVRVDKDCAYCTDEMFRDRRC----NTQAELLAAGCQRESIVVMESSFQ 85

Query: 370 VTLLAQTELLPSLISCHPSGAILLVGSNQG---ELQIFDMALSPINIQLLAE 418
           +T   Q +         P G  + +   +    EL++F+   SP+++ +L +
Sbjct: 86  ITEETQIDTTLRRSQMSPQGLRVRLRPGEERHFELEVFEPLESPVDLYILMD 137


>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
          Length = 1822

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 310 KEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYETHRR 369
           K+    SC  EC+R    C   T    + +      N   + L  GC+  S+++ E+  +
Sbjct: 31  KKAPVKSCT-ECVRVDKDCAYCTDEMFRDRRC----NTQAELLAAGCQRESIVVMESSFQ 85

Query: 370 VTLLAQTELLPSLISCHPSGAILLVGSNQG---ELQIFDMALSPINIQLLAE 418
           +T   Q +         P G  + +   +    EL++F+   SP+++ +L +
Sbjct: 86  ITEETQIDTTLRRSQMSPQGLRVRLRPGEERHFELEVFEPLESPVDLYILMD 137


>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
          Length = 1752

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 310 KEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYETHRR 369
           K+    SC  EC+R    C   T    + +      N   + L  GC+  S+++ E+  +
Sbjct: 31  KKAPVKSCT-ECVRVDKDCAYCTDEMFRDRRC----NTQAELLAAGCQRESIVVMESSFQ 85

Query: 370 VTLLAQTELLPSLISCHPSGAILLVGSNQG---ELQIFDMALSPINIQLLAE 418
           +T   Q +         P G  + +   +    EL++F+   SP+++ +L +
Sbjct: 86  ITEETQIDTTLRRSQMSPQGLRVRLRPGEERHFELEVFEPLESPVDLYILMD 137


>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
           sapiens]
          Length = 1958

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 31/177 (17%)

Query: 237 RVVCWWP----LVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSVRTEWDPLDVRFG 292
           R VCW          D+  +  I  E+D+  L+L G+ +G L  L+              
Sbjct: 287 RSVCWKADRLLAGTQDSEIFEVIVRERDKPMLILQGHCEGELWALA------------LH 334

Query: 293 TKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKL 352
            K+P  V T     SV    +AD  +            + R  ++    S   +    +L
Sbjct: 335 PKKPLAV-TGSDDRSVRLWSLADHAL------------IARCNMEEAVRSVAFSPDGSQL 381

Query: 353 ILGCEDSSLILYETH--RRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMA 407
            LG +D S I+        V  +   + +   +   P G+ L VGSN G + ++ +A
Sbjct: 382 ALGMKDGSFIVLRVRDMTEVVHIKDRKEVIHEMKFSPDGSYLAVGSNDGPVDVYAVA 438


>gi|221316624 dystonin isoform 4 [Homo sapiens]
          Length = 5526

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 5099 WLLALERRRKLNDALDRLEELREFANFDFDIWRKKYM 5135


>gi|221316622 dystonin isoform 3 [Homo sapiens]
          Length = 5537

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 5110 WLLALERRRKLNDALDRLEELREFANFDFDIWRKKYM 5146


>gi|221316618 dystonin isoform 2 [Homo sapiens]
          Length = 5675

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 5248 WLLALERRRKLNDALDRLEELREFANFDFDIWRKKYM 5284


>gi|34577047 dystonin isoform 1 [Homo sapiens]
          Length = 5497

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 5070 WLLALERRRKLNDALDRLEELREFANFDFDIWRKKYM 5106


>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
          Length = 5171

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 90   WTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYV 126
            W L   R  KL D+L  LEEL + +      W+ KY+
Sbjct: 4744 WLLALERRRKLNDALDRLEELREFANFDFDIWRKKYM 4780


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,296,711
Number of Sequences: 37866
Number of extensions: 1197200
Number of successful extensions: 3195
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3172
Number of HSP's gapped (non-prelim): 40
length of query: 746
length of database: 18,247,518
effective HSP length: 110
effective length of query: 636
effective length of database: 14,082,258
effective search space: 8956316088
effective search space used: 8956316088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.