Guide to the Human Genome
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Name: C2orf86 Sequence: fasta or formatted (587aa) NCBI GI: 111548654
Description:

hypothetical protein LOC51057 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {746aa} hypothetical protein LOC51057 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         33           1
 C cysteine            2.6         15           2
 D aspartate           6.5         38           2
 E glutamate           6.6         39           1
 F phenylalanine       4.6         27           2
 G glycine             5.3         31           2
 H histidine           2.6         15           2
 I isoleucine          7.5         44           2
 K lysine              4.1         24           2
 L leucine            13.6         80           4
 M methionine          1.9         11           1
 N asparagine          3.4         20           1
 P proline             4.1         24           2
 Q glutamine           4.6         27           2
 R arginine            6.3         37           2
 S serine              8.2         48           3
 T threonine           4.1         24           2
 V valine              4.8         28           2
 W tryptophan          1.2          7           2
 Y tyrosine            2.6         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51057 isoform 1 
C2orf86               0.990   hypothetical protein LOC51057 isoform 2 
CSTF1                 0.008   cleavage stimulation factor subunit 1 
CSTF1                 0.008   cleavage stimulation factor subunit 1 
CSTF1                 0.008   cleavage stimulation factor subunit 1 
NEDD1                 0.007   neural precursor cell expressed, developmentally do...
NEDD1                 0.007   neural precursor cell expressed, developmentally do...
NEDD1                 0.007   neural precursor cell expressed, developmentally dow...
NEDD1                 0.007   neural precursor cell expressed, developmentally do...
OAS2                  0.006   2'-5'-oligoadenylate synthetase 2 isoform 2 
OAS2                  0.006   2'-5'-oligoadenylate synthetase 2 isoform 1 
RNF128                0.005   ring finger protein 128 isoform 1 
ITGB4                 0.005   integrin beta 4 isoform 2 precursor 
ITGB4                 0.005   integrin beta 4 isoform 1 precursor 
ITGB4                 0.005   integrin beta 4 isoform 3 precursor 
EML6                  0.004   echinoderm microtubule associated protein like 6 [H...
OR2D2                 0.004   olfactory receptor, family 2, subfamily D, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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