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Search of human proteins with 11141887
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11141887 brain link protein-1 [Homo sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11141887 brain link protein-1 [Homo sapiens] 724 0.0
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap... 335 5e-92
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi... 313 1e-85
gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo sap... 286 1e-77
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 216 2e-56
gi|38372931 brevican isoform 2 [Homo sapiens] 204 1e-52
gi|38372935 brevican isoform 1 [Homo sapiens] 204 1e-52
gi|187607300 versican isoform 2 [Homo sapiens] 194 9e-50
gi|21361116 versican isoform 1 [Homo sapiens] 194 9e-50
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 189 2e-48
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 189 2e-48
gi|61743978 stabilin 1 precursor [Homo sapiens] 76 4e-14
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu... 76 5e-14
gi|61743980 stabilin 2 precursor [Homo sapiens] 69 5e-12
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [... 43 4e-04
gi|171460997 CD226 molecule precursor [Homo sapiens] 42 0.001
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens] 39 0.005
gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens] 39 0.005
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens] 39 0.005
gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens] 39 0.005
gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens] 37 0.019
gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens] 37 0.019
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens] 37 0.019
gi|14150145 matrix-remodelling associated 8 [Homo sapiens] 36 0.043
gi|40255157 leucine-rich repeats and immunoglobulin-like domains... 35 0.096
gi|209862903 leucine-rich repeats and immunoglobulin-like domain... 35 0.096
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom... 34 0.16
gi|205277423 immunoglobulin superfamily, member 9 isoform b [Hom... 34 0.16
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 34 0.21
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 34 0.21
>gi|11141887 brain link protein-1 [Homo sapiens]
Length = 340
Score = 724 bits (1869), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MPGWLTLPTLCRFLLWAFTIFHKAQGDPASHPGPHYLLPPIHEVIHSHRGATATLPCVLG 60
MPGWLTLPTLCRFLLWAFTIFHKAQGDPASHPGPHYLLPPIHEVIHSHRGATATLPCVLG
Sbjct: 1 MPGWLTLPTLCRFLLWAFTIFHKAQGDPASHPGPHYLLPPIHEVIHSHRGATATLPCVLG 60
Query: 61 TTPPSYKVRWSKVEPGELRETLILITNGLHARGYGPLGGRARMRRGHRLDASLVIAGVRL 120
TTPPSYKVRWSKVEPGELRETLILITNGLHARGYGPLGGRARMRRGHRLDASLVIAGVRL
Sbjct: 61 TTPPSYKVRWSKVEPGELRETLILITNGLHARGYGPLGGRARMRRGHRLDASLVIAGVRL 120
Query: 121 EDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATY 180
EDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATY
Sbjct: 121 EDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATY 180
Query: 181 SQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRGRPGIRSYGPRDRMRDRYDAFC 240
SQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRGRPGIRSYGPRDRMRDRYDAFC
Sbjct: 181 SQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRGRPGIRSYGPRDRMRDRYDAFC 240
Query: 241 FTSALAGQVFFVPGRLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSV 300
FTSALAGQVFFVPGRLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSV
Sbjct: 241 FTSALAGQVFFVPGRLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSV 300
Query: 301 RFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYGTYCYAEN 340
RFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYGTYCYAEN
Sbjct: 301 RFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYGTYCYAEN 340
>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
sapiens]
Length = 360
Score = 335 bits (858), Expect = 5e-92
Identities = 158/306 (51%), Positives = 207/306 (67%), Gaps = 9/306 (2%)
Query: 43 EVIHSHRGATATLPCVLG-----TTPPSYKVRWSKVEPGELRETLILITNGLHARGYGPL 97
E + +++GA+ LPC +P +V+W K+ E +L+ GL R +G
Sbjct: 56 ETLFTYQGASVILPCRYRYEPALVSPRRVRVKWWKLSENGAPEKDVLVAIGLRHRSFGDY 115
Query: 98 GGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRG 157
GR +R+ D SL I +RLED GRYRCE+I+G+EDES + L L GVVFPYQ G
Sbjct: 116 QGRVHLRQDKEHDVSLEIQDLRLEDYGRYRCEVIDGLEDESGLVELELRGVVFPYQSPNG 175
Query: 158 RYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG 217
RYQFN++E +Q C EQ +A++ QL++AW EGLDWCNAGWL + +V+YP++ R PCGG
Sbjct: 176 RYQFNFHEGQQVCAEQAAVVASFEQLFRAWEEGLDWCNAGWLQDATVQYPIMLPRQPCGG 235
Query: 218 RG-RPGIRSYGPRDRMRDRYDAFCFTSALAGQVFFV--PGRLTLSEAHAACRRRGAVVAK 274
G PG+RSYGPR R RYD FCF +AL G+V+++ P +LTL+EA AC+ A +AK
Sbjct: 236 PGLAPGVRSYGPRHRRLHRYDVFCFATALKGRVYYLEHPEKLTLTEAREACQEDDATIAK 295
Query: 275 VGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQAAYGT 334
VG L+AAWKF GLD+CD GWLADGSVR+P+ P P CG P+PGVRSFGFP PQ YG
Sbjct: 296 VGQLFAAWKFHGLDRCDAGWLADGSVRYPVVHPHPNCGP-PEPGVRSFGFPDPQSRLYGV 354
Query: 335 YCYAEN 340
YCY ++
Sbjct: 355 YCYRQH 360
>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
Length = 354
Score = 313 bits (803), Expect = 1e-85
Identities = 151/330 (45%), Positives = 207/330 (62%), Gaps = 11/330 (3%)
Query: 18 FTIFHKAQGDPASHPGPHYLLPPIHEVIHSHRGATATLPCVLGTTPPSY-------KVRW 70
+T+ H + GPH L+ + SHRG TLPC P ++ +++W
Sbjct: 22 YTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKW 81
Query: 71 SKVEPGELRETLILITNGLHARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCEL 130
+K+ L+E + ++ G H + YG GR ++ G DASLVI + LED GRY+CE+
Sbjct: 82 TKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEV 141
Query: 131 INGIEDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEG 190
I G+ED++V + L L+GVVFPY P GRY N++EA+QAC +QD +A++ QLY AW G
Sbjct: 142 IEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGG 201
Query: 191 LDWCNAGWLLEGSVRYPVLTARAPCGGRGR-PGIRSYGPRDRMRDRYDAFCFTSALAGQV 249
LDWCNAGWL +GSV+YP+ R PCGG+ PG+R+YG D+ + RYD FCFTS G+
Sbjct: 202 LDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRF 261
Query: 250 FFV--PGRLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTP 307
+++ P +LT EA AC GA +AKVG ++AAWK G D+CD GWLADGSVR+PI+ P
Sbjct: 262 YYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRP 321
Query: 308 RPRCGGLPDPGVRSFGFPRPQQAAYGTYCY 337
R RC + VR GFP + YG YC+
Sbjct: 322 RRRCSP-TEAAVRFVGFPDKKHKLYGVYCF 350
Score = 83.2 bits (204), Expect = 3e-16
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 256 LTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLP 315
L EA AC + AV+A LY AW+ GLD C+ GWL+DGSV++PIT PR CGG
Sbjct: 172 LNFHEAQQACLDQDAVIASFDQLYDAWR-GGLDWCNAGWLSDGSVQYPITKPREPCGGQN 230
Query: 316 D-PGVRSFGFPRPQQAAYGTYCYAEN 340
PGVR++GF ++ Y +C+ N
Sbjct: 231 TVPGVRNYGFWDKDKSRYDVFCFTSN 256
>gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo
sapiens]
Length = 402
Score = 286 bits (733), Expect = 1e-77
Identities = 153/309 (49%), Positives = 191/309 (61%), Gaps = 20/309 (6%)
Query: 47 SHRGATATLPCVLGTTPPSY-----KVRWSKVEPGELRETLILITNGLHARGYGPLGGRA 101
SHRG T LPC ++ +++W+KV L T + + G R +G GRA
Sbjct: 58 SHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVD-PLAFTDVFVALGPQHRAFGSYRGRA 116
Query: 102 RMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGRYQF 161
++ DASLV+ V L+D GRY CE+ N +ED++ + L LEGVVFPY P GRY+
Sbjct: 117 ELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKL 176
Query: 162 NYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRG-- 219
+ EA++AC EQDG LA+ QL+ AW +GLDWCNAGWL +GSV+YPV R PCGG G
Sbjct: 177 TFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGT 236
Query: 220 ---------RPGIRSYGPRDRMRDRYDAFCFTSALAGQVFFV-PGR-LTLSEAHAACRRR 268
G+R+YG R +RYDAFCFTS L G+VFF+ P R + S A AC R
Sbjct: 237 GSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAAR 296
Query: 269 GAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQ 328
GA VAKVG L+AAWK LD+C GWLADGS R+PI PR RCGG PGVRS GFP
Sbjct: 297 GAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGG-RRPGVRSLGFPDAT 355
Query: 329 QAAYGTYCY 337
+ +G YCY
Sbjct: 356 RRLFGVYCY 364
Score = 76.6 bits (187), Expect = 3e-14
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 255 RLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGL 314
+LT +EA AC + ++A L+AAW+ GLD C+ GWL DGSV++P+ PR CGGL
Sbjct: 175 KLTFAEAQRACAEQDGILASAEQLHAAWR-DGLDWCNAGWLRDGSVQYPVNRPREPCGGL 233
Query: 315 -----------PDPGVRSFGFPRPQQAAYGTYCYAEN 340
+ G+R++G+ + Y +C+ N
Sbjct: 234 GGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSN 270
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 216 bits (550), Expect = 2e-56
Identities = 127/304 (41%), Positives = 176/304 (57%), Gaps = 25/304 (8%)
Query: 55 LPCVLGTTP-PSY-----KVRWSKVEP--GELRETLILITNGLHARGYGPLGGRARMRR- 105
LPC+ P PS +++W+KV G+ ++ IL+ R GR +
Sbjct: 57 LPCLFTLQPRPSAARDAPRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSY 116
Query: 106 -GHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGRYQFNYY 164
R +A+L++ +R D G YRC+++ GIEDE + L + GVVF Y+ +R RY +
Sbjct: 117 PRRRANATLLLGPLRASDSGLYRCQVVRGIEDEQDLVPLEVTGVVFHYRSARDRYALTFA 176
Query: 165 EAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG--RGRPG 222
EA++AC +A L A+ +G D C+AGWL + +VRYP+ +R C G PG
Sbjct: 177 EAQEACRLSSAIIAAPRHLQAAFEDGFDNCDAGWLSDRTVRYPITQSRPGCYGDRSSLPG 236
Query: 223 IRSYGPRDRMRDRYDAFCFTSALAGQVFFV--PGRLTLSEAHAACRRRGAVVAKVGHLYA 280
+RSYG R+ ++ YD +CF L G+VF+V RLTL+ A A CRR+GA +A VG L+
Sbjct: 237 VRSYGRRN-PQELYDVYCFARELGGEVFYVGPARRLTLAGARAQCRRQGAALASVGQLHL 295
Query: 281 AWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF-------GFPRPQQAAYG 333
AW GLDQCD GWLADGSVR+PI TPR RCGG P PGVR+ GFP P + +
Sbjct: 296 AW-HEGLDQCDPGWLADGSVRYPIQTPRRRCGG-PAPGVRTVYRFANRTGFPSPAE-RFD 352
Query: 334 TYCY 337
YC+
Sbjct: 353 AYCF 356
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 204 bits (518), Expect = 1e-52
Identities = 123/313 (39%), Positives = 173/313 (55%), Gaps = 28/313 (8%)
Query: 50 GATATLPC-VLGTTPP--------SYKVRWSKVEPGELRETLILITNGLHARGYGPLGGR 100
G T+PC V PP S +V+W+ + G RE +L+ G+ + R
Sbjct: 50 GGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRG--REAEVLVARGVRVKVNEAYRFR 107
Query: 101 ARMRR--GHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGR 158
+ D SL ++ +R D G YRCE+ +GI+D S A+ + ++GVVF Y+ R
Sbjct: 108 VALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSAR 167
Query: 159 YQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG- 217
Y F++ A++AC +AT QLY A+ G + C+AGWL + +VRYP+ T R C G
Sbjct: 168 YAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREACYGD 227
Query: 218 -RGRPGIRSYGPRDRMRDRYDAFCFTSALAGQVFF--VPGRLTLSEAHAACRRRGAVVAK 274
G PG+R+YG D D YD +C+ L G++F P +LTL EA A C+ RGA +A
Sbjct: 228 MDGFPGVRNYGVVD-PDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAYCQERGAEIAT 286
Query: 275 VGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF-------GFPRP 327
G LYAAW GLD C GWLADGSVR+PI TP RCGG PGV++ GFP
Sbjct: 287 TGQLYAAWD-GGLDHCSPGWLADGSVRYPIVTPSQRCGG-GLPGVKTLFLFPNQTGFPN- 343
Query: 328 QQAAYGTYCYAEN 340
+ + + YC+ ++
Sbjct: 344 KHSRFNVYCFRDS 356
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 204 bits (518), Expect = 1e-52
Identities = 123/313 (39%), Positives = 173/313 (55%), Gaps = 28/313 (8%)
Query: 50 GATATLPC-VLGTTPP--------SYKVRWSKVEPGELRETLILITNGLHARGYGPLGGR 100
G T+PC V PP S +V+W+ + G RE +L+ G+ + R
Sbjct: 50 GGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRG--REAEVLVARGVRVKVNEAYRFR 107
Query: 101 ARMRR--GHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGR 158
+ D SL ++ +R D G YRCE+ +GI+D S A+ + ++GVVF Y+ R
Sbjct: 108 VALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSAR 167
Query: 159 YQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG- 217
Y F++ A++AC +AT QLY A+ G + C+AGWL + +VRYP+ T R C G
Sbjct: 168 YAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREACYGD 227
Query: 218 -RGRPGIRSYGPRDRMRDRYDAFCFTSALAGQVFF--VPGRLTLSEAHAACRRRGAVVAK 274
G PG+R+YG D D YD +C+ L G++F P +LTL EA A C+ RGA +A
Sbjct: 228 MDGFPGVRNYGVVD-PDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAYCQERGAEIAT 286
Query: 275 VGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF-------GFPRP 327
G LYAAW GLD C GWLADGSVR+PI TP RCGG PGV++ GFP
Sbjct: 287 TGQLYAAWD-GGLDHCSPGWLADGSVRYPIVTPSQRCGG-GLPGVKTLFLFPNQTGFPN- 343
Query: 328 QQAAYGTYCYAEN 340
+ + + YC+ ++
Sbjct: 344 KHSRFNVYCFRDS 356
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 194 bits (493), Expect = 9e-50
Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 30/310 (9%)
Query: 54 TLPC---VLGTTPPSY------KVRWSKVEPG----ELRETLILITNGLHARGYGPLGGR 100
+LPC + T PPSY +++WSK+E +L+ET +L+ + + GR
Sbjct: 41 SLPCHFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDYKGR 100
Query: 101 ARMRRGHRL--DASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGR 158
+ DASL + + D G YRC+++ GIED ++L+++GVVF Y+ + R
Sbjct: 101 VSVPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAATSR 160
Query: 159 YQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG- 217
Y N+ A++AC + +AT QL+ A+ +G + C+AGWL + +VRYP+ R C G
Sbjct: 161 YTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGCYGD 220
Query: 218 -RGRPGIRSYGPRDRMRDRYDAFCFTSALAGQVFF--VPGRLTLSEAHAACRRRGAVVAK 274
G+ G+R+YG R ++ YD +C+ L G VF VP + T EA C + A +A
Sbjct: 221 KMGKAGVRTYGFRS-PQETYDVYCYVDHLDGDVFHLTVPSKFTFEEAAKECENQDARLAT 279
Query: 275 VGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF-------GFPRP 327
VG L AAW+ +G DQCD GWL+D SVR P+T R +CGG GVR+ GFP P
Sbjct: 280 VGELQAAWR-NGFDQCDYGWLSDASVRHPVTVARAQCGG-GLLGVRTLYRFENQTGFP-P 336
Query: 328 QQAAYGTYCY 337
+ + YC+
Sbjct: 337 PDSRFDAYCF 346
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 194 bits (493), Expect = 9e-50
Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 30/310 (9%)
Query: 54 TLPC---VLGTTPPSY------KVRWSKVEPG----ELRETLILITNGLHARGYGPLGGR 100
+LPC + T PPSY +++WSK+E +L+ET +L+ + + GR
Sbjct: 41 SLPCHFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDYKGR 100
Query: 101 ARMRRGHRL--DASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGR 158
+ DASL + + D G YRC+++ GIED ++L+++GVVF Y+ + R
Sbjct: 101 VSVPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAATSR 160
Query: 159 YQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGG- 217
Y N+ A++AC + +AT QL+ A+ +G + C+AGWL + +VRYP+ R C G
Sbjct: 161 YTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGCYGD 220
Query: 218 -RGRPGIRSYGPRDRMRDRYDAFCFTSALAGQVFF--VPGRLTLSEAHAACRRRGAVVAK 274
G+ G+R+YG R ++ YD +C+ L G VF VP + T EA C + A +A
Sbjct: 221 KMGKAGVRTYGFRS-PQETYDVYCYVDHLDGDVFHLTVPSKFTFEEAAKECENQDARLAT 279
Query: 275 VGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF-------GFPRP 327
VG L AAW+ +G DQCD GWL+D SVR P+T R +CGG GVR+ GFP P
Sbjct: 280 VGELQAAWR-NGFDQCDYGWLSDASVRHPVTVARAQCGG-GLLGVRTLYRFENQTGFP-P 336
Query: 328 QQAAYGTYCY 337
+ + YC+
Sbjct: 337 PDSRFDAYCF 346
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 189 bits (481), Expect = 2e-48
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 30/317 (9%)
Query: 34 PHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYKVRWSKVEPGELRETLILITNGLHARG 93
P Y + P+H V T P T P + +++WS+V + +E ++L+ R
Sbjct: 50 PCYFIDPMHPV--------TTAP---STAPLAPRIKWSRVS--KEKEVVLLVATEGRVRV 96
Query: 94 YGPLGGRARMRRGHRL--DASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFP 151
+ + + DA+L + +R D G YRCE+++GIED L + ++G+VF
Sbjct: 97 NSAYQDKVSLPNYPAIPSDATLEVQSLRSNDSGVYRCEVMHGIEDSEATLEVVVKGIVFH 156
Query: 152 YQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTA 211
Y+ RY ++ A++AC + +AT QL A+ +G C+AGWL + +VRYP+ T
Sbjct: 157 YRAISTRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTP 216
Query: 212 RAPCGGRGR--PGIRSYGPRDRMRDRYDAFCFTSALAGQVFFV--PGRLTLSEAHAACRR 267
R C G PG+R+YG RD + YD +CF + G+VF+ P + T EA CRR
Sbjct: 217 REGCYGDKDEFPGVRTYGIRD-TNETYDVYCFAEEMEGEVFYATSPEKFTFQEAANECRR 275
Query: 268 RGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF----- 322
GA +A G LY AW+ +G+D C GWLAD SVR+PI+ RP CGG GVR+
Sbjct: 276 LGARLATTGQLYLAWQ-AGMDMCSAGWLADRSVRYPISKARPNCGG-NLLGVRTVYVHAN 333
Query: 323 --GFPRPQQAAYGTYCY 337
G+P P + Y CY
Sbjct: 334 QTGYPDP-SSRYDAICY 349
Score = 159 bits (401), Expect = 4e-39
Identities = 83/179 (46%), Positives = 107/179 (59%), Gaps = 7/179 (3%)
Query: 147 GVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRY 206
GVVF Y+P RY + EA+QAC +A+ QL A+ G + C+AGWL + +VRY
Sbjct: 477 GVVFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRY 536
Query: 207 PVLTARAPCGG--RGRPGIRSYGPRDRMRDRYDAFCFTSALAGQVFFVP--GRLTLSEAH 262
P+++ R PC G PG+R+YG R + YD +CF L G+VFF + T EA
Sbjct: 537 PIVSPRTPCVGDKDSSPGVRTYGVRP-STETYDVYCFVDRLEGEVFFATRLEQFTFQEAL 595
Query: 263 AACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRS 321
C A +A G LYAAW GLD+C GWLADGS+R+PI TPRP CGG PGVR+
Sbjct: 596 EFCESHNATLATTGQLYAAWS-RGLDKCYAGWLADGSLRYPIVTPRPACGG-DKPGVRT 652
Score = 83.6 bits (205), Expect = 2e-16
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
Query: 160 QFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRG 219
QF + EA + CE + LAT QLY AW+ GLD C AGWL +GS+RYP++T R CGG
Sbjct: 588 QFTFQEALEFCESHNATLATTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGG-D 646
Query: 220 RPGIRS---YGPRDRMRD---RYDAFCF 241
+PG+R+ Y + + D R+ AFCF
Sbjct: 647 KPGVRTVYLYPNQTGLPDPLSRHHAFCF 674
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 189 bits (481), Expect = 2e-48
Identities = 114/317 (35%), Positives = 169/317 (53%), Gaps = 30/317 (9%)
Query: 34 PHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYKVRWSKVEPGELRETLILITNGLHARG 93
P Y + P+H V T P T P + +++WS+V + +E ++L+ R
Sbjct: 50 PCYFIDPMHPV--------TTAP---STAPLAPRIKWSRVS--KEKEVVLLVATEGRVRV 96
Query: 94 YGPLGGRARMRRGHRL--DASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFP 151
+ + + DA+L + +R D G YRCE+++GIED L + ++G+VF
Sbjct: 97 NSAYQDKVSLPNYPAIPSDATLEVQSLRSNDSGVYRCEVMHGIEDSEATLEVVVKGIVFH 156
Query: 152 YQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTA 211
Y+ RY ++ A++AC + +AT QL A+ +G C+AGWL + +VRYP+ T
Sbjct: 157 YRAISTRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTP 216
Query: 212 RAPCGGRGR--PGIRSYGPRDRMRDRYDAFCFTSALAGQVFFV--PGRLTLSEAHAACRR 267
R C G PG+R+YG RD + YD +CF + G+VF+ P + T EA CRR
Sbjct: 217 REGCYGDKDEFPGVRTYGIRD-TNETYDVYCFAEEMEGEVFYATSPEKFTFQEAANECRR 275
Query: 268 RGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSF----- 322
GA +A G LY AW+ +G+D C GWLAD SVR+PI+ RP CGG GVR+
Sbjct: 276 LGARLATTGQLYLAWQ-AGMDMCSAGWLADRSVRYPISKARPNCGG-NLLGVRTVYVHAN 333
Query: 323 --GFPRPQQAAYGTYCY 337
G+P P + Y CY
Sbjct: 334 QTGYPDP-SSRYDAICY 349
Score = 159 bits (401), Expect = 4e-39
Identities = 83/179 (46%), Positives = 107/179 (59%), Gaps = 7/179 (3%)
Query: 147 GVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRY 206
GVVF Y+P RY + EA+QAC +A+ QL A+ G + C+AGWL + +VRY
Sbjct: 477 GVVFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRY 536
Query: 207 PVLTARAPCGG--RGRPGIRSYGPRDRMRDRYDAFCFTSALAGQVFFVP--GRLTLSEAH 262
P+++ R PC G PG+R+YG R + YD +CF L G+VFF + T EA
Sbjct: 537 PIVSPRTPCVGDKDSSPGVRTYGVRP-STETYDVYCFVDRLEGEVFFATRLEQFTFQEAL 595
Query: 263 AACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRS 321
C A +A G LYAAW GLD+C GWLADGS+R+PI TPRP CGG PGVR+
Sbjct: 596 EFCESHNATLATTGQLYAAWS-RGLDKCYAGWLADGSLRYPIVTPRPACGG-DKPGVRT 652
Score = 83.6 bits (205), Expect = 2e-16
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
Query: 160 QFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRG 219
QF + EA + CE + LAT QLY AW+ GLD C AGWL +GS+RYP++T R CGG
Sbjct: 588 QFTFQEALEFCESHNATLATTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGG-D 646
Query: 220 RPGIRS---YGPRDRMRD---RYDAFCF 241
+PG+R+ Y + + D R+ AFCF
Sbjct: 647 KPGVRTVYLYPNQTGLPDPLSRHHAFCF 674
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 76.3 bits (186), Expect = 4e-14
Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 149 VFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPV 208
VF Q + G Y N+ EA+ ACE Q LA++ QL A G C GWL GS +PV
Sbjct: 2209 VFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLCLMGWLANGSTAHPV 2268
Query: 209 LTARAPCGGRGRPGIRSYGPRDRMRDRYDAFCF 241
+ A C G GR GI S G R + +R+DA+CF
Sbjct: 2269 VFPVADC-GNGRVGIVSLGARKNLSERWDAYCF 2300
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 253 PGRLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCG 312
P L SEA AAC +GAV+A L AA + G C GWLA+GS P+ P CG
Sbjct: 2218 PYGLNFSEAEAACEAQGAVLASFPQLSAAQQL-GFHLCLMGWLANGSTAHPVVFPVADCG 2276
Query: 313 GLPDPGVRSFGFPRPQQAAYGTYCY 337
G+ S G + + YC+
Sbjct: 2277 N-GRVGIVSLGARKNLSERWDAYCF 2300
>gi|26051243 tumor necrosis factor, alpha-induced protein 6
precursor [Homo sapiens]
Length = 277
Score = 75.9 bits (185), Expect = 5e-14
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 149 VFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPV 208
V+ + G+Y+ Y EAK CE + G LATY QL A G C AGW+ +G V YP+
Sbjct: 37 VYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRVGYPI 96
Query: 209 LTARAPCGGRGRPGIRSYGPRDRMRDRYDAFCFT--SALAGQVFFVPGRL 256
+ C G G+ GI YG R +R+DA+C+ + G VF P ++
Sbjct: 97 VKPGPNC-GFGKTGIIDYGIRLNRSERWDAYCYNPHAKECGGVFTDPKQI 145
Score = 53.9 bits (128), Expect = 2e-07
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 255 RLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGL 314
+LT +EA A C G +A L AA K G C GW+A G V +PI P P C G
Sbjct: 48 KLTYAEAKAVCEFEGGHLATYKQLEAARKI-GFHVCAAGWMAKGRVGYPIVKPGPNC-GF 105
Query: 315 PDPGVRSFGFPRPQQAAYGTYCY 337
G+ +G + + YCY
Sbjct: 106 GKTGIIDYGIRLNRSERWDAYCY 128
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 69.3 bits (168), Expect = 5e-12
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 149 VFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPV 208
VF + G+Y+ + +A++AC + +ATY+QL A C+AGWL G V YP
Sbjct: 2199 VFHLRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHLCSAGWLETGRVAYPT 2258
Query: 209 LTARAPCGGRGRPGIRSYGPRDRMRDRYDAFCF 241
A CG G GI YGPR + +D FC+
Sbjct: 2259 AFASQNCGS-GVVGIVDYGPRPNKSEMWDVFCY 2290
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 255 RLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGL 314
+LT +A AC A +A L A K + C GWL G V +P CG
Sbjct: 2210 KLTFDKAREACANEAATMATYNQLSYAQK-AKYHLCSAGWLETGRVAYPTAFASQNCGS- 2267
Query: 315 PDPGVRSFGFPRPQQA-AYGTYCY 337
G+ +G PRP ++ + +CY
Sbjct: 2268 GVVGIVDYG-PRPNKSEMWDVFCY 2290
>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
Length = 322
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 255 RLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGL 314
+L +EA ACR G +A + A K S + C GW+ DG V +P P+CG
Sbjct: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKAS-FETCSYGWVGDGFVVISRISPNPKCG-- 107
Query: 315 PDPGVRSFGFPRPQQAAYGTYCY 337
GV + P + YCY
Sbjct: 108 -KNGVGVLIWKVPVSRQFAAYCY 129
Score = 38.5 bits (88), Expect = 0.009
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 135 EDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWC 194
E+ S+ ++ + G+ + + Q N+ EAK+AC LA Q+ A + C
Sbjct: 28 EELSIQVSCRIMGITLVSK--KANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
Query: 195 NAGWLLEGSVRYPVLTARAPCGGRGRPGIRSYGPRDRMRDRYDAFCFTSA 244
+ GW+ +G V ++ CG G + P R ++ A+C+ S+
Sbjct: 86 SYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSR---QFAAYCYNSS 132
>gi|171460997 CD226 molecule precursor [Homo sapiens]
Length = 336
Score = 41.6 bits (96), Expect = 0.001
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 40 PIHEVIHSHRGATATLPCVLGTTPPSYKVRWSKVEPGELRETLILITNGLHARGYGPLGG 99
P + I S G TL C T P VRW K++P ++ L+ N +H R +
Sbjct: 135 PSNSHIVSEPGKNVTLTCQPQMTWPVQAVRWEKIQPRQI--DLLTYCNLVHGRNFTSKFP 192
Query: 100 RARMRR-GHRLDASLVIAGVRLEDEGRYRCEL-INGIEDESVALTLSL 145
R + H + +VI V + D G YRC L + E+E+ + L++
Sbjct: 193 RQIVSNCSHGRWSVIVIPDVTVSDSGLYRCYLQASAGENETFVMRLTV 240
>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
Length = 1863
Score = 39.3 bits (90), Expect = 0.005
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 98 GGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEG 147
GGR + G R SLVI V ED G+Y CE NG V + L++EG
Sbjct: 76 GGRFLLDCGIRGTFSLVIHAVHEEDRGKYTCEATNGSGARQVTVELTVEG 125
Score = 35.4 bits (80), Expect = 0.074
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 51 ATATLPCVLGTTPPSYKVRWSKV--EPGELRETLILITNGLHA-----RGYGPLGGRARM 103
A T P + G PP + + +V + G++ IT +G PL AR+
Sbjct: 148 AVETRPSIWGECPPKFATKLGRVVVKEGQMGRFSCKITGRPQPQVTWLKGNVPLQPSARV 207
Query: 104 RRGHRLDASLV-IAGVRLEDEGRYRCELINGIEDESVALTLSLEGV 148
+ ++ I GV +D G Y C ++NG S++ LS++G+
Sbjct: 208 SVSEKNGMQVLEIHGVNQDDVGVYTCLVVNGSGKASMSAELSIQGL 253
>gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]
Length = 1914
Score = 39.3 bits (90), Expect = 0.005
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 98 GGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEG 147
GGR + G R SLVI V ED G+Y CE NG V + L++EG
Sbjct: 76 GGRFLLDCGIRGTFSLVIHAVHEEDRGKYTCEATNGSGARQVTVELTVEG 125
Score = 35.4 bits (80), Expect = 0.074
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 51 ATATLPCVLGTTPPSYKVRWSKV--EPGELRETLILITNGLHA-----RGYGPLGGRARM 103
A T P + G PP + + +V + G++ IT +G PL AR+
Sbjct: 148 AVETRPSIWGECPPKFATKLGRVVVKEGQMGRFSCKITGRPQPQVTWLKGNVPLQPSARV 207
Query: 104 RRGHRLDASLV-IAGVRLEDEGRYRCELINGIEDESVALTLSLEGV 148
+ ++ I GV +D G Y C ++NG S++ LS++G+
Sbjct: 208 SVSEKNGMQVLEIHGVNQDDVGVYTCLVVNGSGKASMSAELSIQGL 253
>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
Length = 1794
Score = 39.3 bits (90), Expect = 0.005
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 98 GGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEG 147
GGR + G R SLVI V ED G+Y CE NG V + L++EG
Sbjct: 76 GGRFLLDCGIRGTFSLVIHAVHEEDRGKYTCEATNGSGARQVTVELTVEG 125
Score = 35.4 bits (80), Expect = 0.074
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 51 ATATLPCVLGTTPPSYKVRWSKV--EPGELRETLILITNGLHA-----RGYGPLGGRARM 103
A T P + G PP + + +V + G++ IT +G PL AR+
Sbjct: 148 AVETRPSIWGECPPKFATKLGRVVVKEGQMGRFSCKITGRPQPQVTWLKGNVPLQPSARV 207
Query: 104 RRGHRLDASLV-IAGVRLEDEGRYRCELINGIEDESVALTLSLEGV 148
+ ++ I GV +D G Y C ++NG S++ LS++G+
Sbjct: 208 SVSEKNGMQVLEIHGVNQDDVGVYTCLVVNGSGKASMSAELSIQGL 253
>gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]
Length = 1845
Score = 39.3 bits (90), Expect = 0.005
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 98 GGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEG 147
GGR + G R SLVI V ED G+Y CE NG V + L++EG
Sbjct: 76 GGRFLLDCGIRGTFSLVIHAVHEEDRGKYTCEATNGSGARQVTVELTVEG 125
Score = 35.4 bits (80), Expect = 0.074
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 51 ATATLPCVLGTTPPSYKVRWSKV--EPGELRETLILITNGLHA-----RGYGPLGGRARM 103
A T P + G PP + + +V + G++ IT +G PL AR+
Sbjct: 148 AVETRPSIWGECPPKFATKLGRVVVKEGQMGRFSCKITGRPQPQVTWLKGNVPLQPSARV 207
Query: 104 RRGHRLDASLV-IAGVRLEDEGRYRCELINGIEDESVALTLSLEGV 148
+ ++ I GV +D G Y C ++NG S++ LS++G+
Sbjct: 208 SVSEKNGMQVLEIHGVNQDDVGVYTCLVVNGSGKASMSAELSIQGL 253
>gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens]
Length = 352
Score = 37.4 bits (85), Expect = 0.019
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 32 PGPHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYK---VRWSKVEPGELRETLILITNG 88
PG H + +++ ++ G L C PS K V W K G ++ + +
Sbjct: 26 PGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGS-KQNVAIYNPS 84
Query: 89 LHARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCE 129
+ P R R D ++ ++ + LEDEG Y CE
Sbjct: 85 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICE 125
>gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens]
Length = 458
Score = 37.4 bits (85), Expect = 0.019
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 32 PGPHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYK---VRWSKVEPGELRETLILITNG 88
PG H + +++ ++ G L C PS K V W K G ++ + +
Sbjct: 26 PGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGS-KQNVAIYNPS 84
Query: 89 LHARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCE 129
+ P R R D ++ ++ + LEDEG Y CE
Sbjct: 85 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICE 125
>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]
Length = 517
Score = 37.4 bits (85), Expect = 0.019
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 32 PGPHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYK---VRWSKVEPGELRETLILITNG 88
PG H + +++ ++ G L C PS K V W K G ++ + +
Sbjct: 26 PGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGS-KQNVAIYNPS 84
Query: 89 LHARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCE 129
+ P R R D ++ ++ + LEDEG Y CE
Sbjct: 85 MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICE 125
>gi|14150145 matrix-remodelling associated 8 [Homo sapiens]
Length = 442
Score = 36.2 bits (82), Expect = 0.043
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 43 EVIHSHRGATATLPCV--------LGTTPPSYKVRWSKVEPG---ELRETLILITNGLHA 91
EV+ RGA A L CV V W + PG + + L+ +
Sbjct: 172 EVLAVARGAPALLTCVNRGHVWTDRHVEEAQQVVHWDRQPPGVPHDRADRLLDLYASGER 231
Query: 92 RGYGPLGGRARMRRG----HRLDASLVIAGVRLEDEGRYRCEL 130
R YGPL R R+ G R D SL I + + DEG Y C L
Sbjct: 232 RAYGPLFLRDRVAVGADAFERGDFSLRIEPLEVADEGTYSCHL 274
>gi|40255157 leucine-rich repeats and immunoglobulin-like domains 3
isoform 2 [Homo sapiens]
Length = 1119
Score = 35.0 bits (79), Expect = 0.096
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 24/112 (21%)
Query: 34 PHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYKVRWSKVEPGELRETLILITNGLHARG 93
P +L P + + +G TA L C+ G +PP K+ W+K + L++ A G
Sbjct: 697 PSFLRPLLDRTVT--KGETAVLQCIAGGSPPP-KLNWTKDD-----SPLVVTERHFFAAG 748
Query: 94 YGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSL 145
+ L+I + D G+Y CE+ N + E + LS+
Sbjct: 749 ----------------NQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSV 784
>gi|209862903 leucine-rich repeats and immunoglobulin-like domains 3
isoform 1 [Homo sapiens]
Length = 1059
Score = 35.0 bits (79), Expect = 0.096
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 24/112 (21%)
Query: 34 PHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYKVRWSKVEPGELRETLILITNGLHARG 93
P +L P + + +G TA L C+ G +PP K+ W+K + L++ A G
Sbjct: 637 PSFLRPLLDRTVT--KGETAVLQCIAGGSPPP-KLNWTKDD-----SPLVVTERHFFAAG 688
Query: 94 YGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSL 145
+ L+I + D G+Y CE+ N + E + LS+
Sbjct: 689 ----------------NQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSV 724
>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
sapiens]
Length = 1179
Score = 34.3 bits (77), Expect = 0.16
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 50 GATATLPCVL---GTTPPSYKVRWSKVEPGELRETLILITNGLHARGYGP-LGGRARMRR 105
G + L C L PP + + W + G L I I GL++ P GR R+++
Sbjct: 34 GESVVLGCDLLPPAGRPPLHVIEWLRF--GFLLP--IFIQFGLYSPRIDPDYVGRVRLQK 89
Query: 106 GHRLDASLVIAGVRLEDEGRYRCEL 130
G ASL I G+R+ED+G Y C +
Sbjct: 90 G----ASLQIEGLRVEDQGWYECRV 110
>gi|205277423 immunoglobulin superfamily, member 9 isoform b [Homo
sapiens]
Length = 1163
Score = 34.3 bits (77), Expect = 0.16
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 50 GATATLPCVL---GTTPPSYKVRWSKVEPGELRETLILITNGLHARGYGP-LGGRARMRR 105
G + L C L PP + + W + G L I I GL++ P GR R+++
Sbjct: 34 GESVVLGCDLLPPAGRPPLHVIEWLRF--GFLLP--IFIQFGLYSPRIDPDYVGRVRLQK 89
Query: 106 GHRLDASLVIAGVRLEDEGRYRCEL 130
G ASL I G+R+ED+G Y C +
Sbjct: 90 G----ASLQIEGLRVEDQGWYECRV 110
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 33.9 bits (76), Expect = 0.21
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 34 PHYLLPPIHEVIHSHRGATATLPCV-LGTTPP--SYKVRWSKVEPGELRETLILITNGLH 90
P ++ P E I + RG T T CV +G P ++++ W + P R T+
Sbjct: 405 PPQVVTPPRESIQASRGQTVTFTCVAIGVPTPIINWRLNWGHI-PSHPRVTVT------- 456
Query: 91 ARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCELIN 132
GGR +L+I V+ D+G Y CE +N
Sbjct: 457 -----SEGGRG----------TLIIRDVKESDQGAYTCEAMN 483
Score = 29.6 bits (65), Expect = 4.0
Identities = 33/128 (25%), Positives = 43/128 (33%), Gaps = 34/128 (26%)
Query: 28 PASHPGPHYLL----PPIHEVIHSHR----GATATLPCVLGTTPPSYKVRWSKVEPGELR 79
PA H +L PP + H G T L C+ TPP +WS+V
Sbjct: 3283 PAGHAEATIILHVESPPYATTVPEHASVQAGETVQLQCLAHGTPP-LTFQWSRVGSS--- 3338
Query: 80 ETLILITNGLHARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESV 139
L GRA R + L ED GRYRC + N +
Sbjct: 3339 -----------------LPGRATAR-----NELLHFERAAPEDSGRYRCRVTNKVGSAEA 3376
Query: 140 ALTLSLEG 147
L ++G
Sbjct: 3377 FAQLLVQG 3384
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 33.9 bits (76), Expect = 0.21
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 26/112 (23%)
Query: 34 PHYLLPPIHEVIHSHRGATATLPCVLGTTPPSYKVRWSKVEPGELRETLILITNGLHARG 93
P +L P+++V+ + A T C + PP ++RW K E GEL
Sbjct: 258 PSFLRRPVNQVVLAD--APVTFLCEVKGDPPP-RLRWRK-EDGELPT------------- 300
Query: 94 YGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSL 145
GR +R H SL I V EDEG Y C N + + +LS+
Sbjct: 301 -----GRYEIRSDH----SLWIGHVSAEDEGTYTCVAENSVGRAEASGSLSV 343
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,957,814
Number of Sequences: 37866
Number of extensions: 815763
Number of successful extensions: 2509
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 324
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.