Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131669 Sequence: fasta or formatted (134aa) NCBI GI: 169212812
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {134aa} PREDICTED: hypothetical protein
alt mRNA {134aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         12           3
 C cysteine            1.5          2           1
 D aspartate           5.2          7           1
 E glutamate           3.7          5           1
 F phenylalanine       3.7          5           1
 G glycine            14.2         19           2
 H histidine           4.5          6           1
 I isoleucine          0.7          1           1
 K lysine              3.0          4           2
 L leucine            14.2         19           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline             9.7         13           2
 Q glutamine           5.2          7           1
 R arginine            4.5          6           1
 S serine              6.0          8           2
 T threonine           4.5          6           1
 V valine              7.5         10           2
 W tryptophan          1.5          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131669          1.000   PREDICTED: hypothetical protein 
LOC100131669          1.000   PREDICTED: hypothetical protein 
STRN4                 0.024   zinedin isoform 2 
STRN4                 0.024   zinedin isoform 1 
LOC100293235          0.020   PREDICTED: hypothetical protein 
LOC100291469          0.020   PREDICTED: hypothetical protein XP_002346693 
MAN1B1                0.020   alpha 1,2-mannosidase 
MGC50722              0.020   hypothetical protein LOC399693 
KLF4                  0.016   Kruppel-like factor 4 (gut) 
LOC100292535          0.016   PREDICTED: hypothetical protein 
LOC100290806          0.016   PREDICTED: hypothetical protein XP_002348069 
CRLS1                 0.012   cardiolipin synthase 1 isoform 1 
MICAL1                0.012   microtubule associated monoxygenase, calponin and L...
MICAL1                0.012   microtubule associated monoxygenase, calponin and L...
LOC728767             0.012   PREDICTED: hypothetical protein 
LOC728767             0.012   PREDICTED: hypothetical protein 
RAX                   0.012   retina and anterior neural fold homeobox 
CREB5                 0.012   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.012   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.012   cAMP responsive element binding protein 5 isoform al...
DIDO1                 0.012   death inducer-obliterator 1 isoform c 
RTN3                  0.008   reticulon 3 isoform d 
RTN3                  0.008   reticulon 3 isoform a 
NSD1                  0.008   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.008   nuclear receptor binding SET domain protein 1 isofor...
HOXB7                 0.008   homeobox B7 
BTBD2                 0.008   BTB (POZ) domain containing 2 
KIAA0182              0.008   genetic suppressor element 1 isoform 2 
KIAA0182              0.008   genetic suppressor element 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press