Guide to the Human Genome
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Name: LOC100290806 Sequence: fasta or formatted (363aa) NCBI GI: 239752017
Description:

PREDICTED: hypothetical protein XP_002348069

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         32           2
 C cysteine            4.4         16           1
 D aspartate           3.6         13           2
 E glutamate           6.6         24           2
 F phenylalanine       1.7          6           1
 G glycine            11.6         42           2
 H histidine           5.8         21           2
 I isoleucine          1.7          6           1
 K lysine              5.0         18           2
 L leucine             6.6         24           2
 M methionine          0.6          2           1
 N asparagine          1.1          4           1
 P proline             7.4         27           1
 Q glutamine           7.7         28           3
 R arginine            6.9         25           2
 S serine              5.5         20           2
 T threonine           2.8         10           1
 V valine              8.3         30           2
 W tryptophan          2.5          9           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348069 
LOC100292535          0.811   PREDICTED: hypothetical protein 
PAPLN                 0.011   papilin 
SRRM2                 0.008   splicing coactivator subunit SRm300 
BAHCC1                0.007   BAH domain and coiled-coil containing 1 
PSD4                  0.007   pleckstrin and Sec7 domain containing 4 
DNHD1                 0.005   dynein heavy chain domain 1 isoform 1 
LOC100131669          0.005   PREDICTED: hypothetical protein 
LOC100131669          0.005   PREDICTED: hypothetical protein 
LOC100131669          0.005   PREDICTED: hypothetical protein 
AXIN2                 0.005   axin 2 
C2orf27B              0.004   hypothetical protein LOC408029 
C2orf27A              0.004   hypothetical protein LOC29798 
TBC1D5                0.004   TBC1 domain family, member 5 isoform a 
TBC1D5                0.004   TBC1 domain family, member 5 isoform b 
TBC1D5                0.004   TBC1 domain family, member 5 isoform b 
NTNG2                 0.004   netrin G2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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