Guide to the Human Genome
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Name: LOC100292535 Sequence: fasta or formatted (407aa) NCBI GI: 239757500
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         37           2
 C cysteine            3.2         13           1
 D aspartate           3.4         14           2
 E glutamate           6.9         28           2
 F phenylalanine       1.5          6           1
 G glycine            12.3         50           2
 H histidine           5.4         22           2
 I isoleucine          2.0          8           1
 K lysine              4.4         18           2
 L leucine             6.9         28           2
 M methionine          0.5          2           1
 N asparagine          1.5          6           1
 P proline             7.4         30           1
 Q glutamine           7.1         29           3
 R arginine            7.9         32           2
 S serine              5.4         22           2
 T threonine           2.9         12           1
 V valine              7.9         32           2
 W tryptophan          2.5         10           1
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290806          0.728   PREDICTED: hypothetical protein XP_002348069 
FOXJ2                 0.017   forkhead box J2 
RSBN1L                0.011   round spermatid basic protein 1-like 
SRRM2                 0.007   splicing coactivator subunit SRm300 
LOC375295             0.006   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.006   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.006   PREDICTED: hypothetical protein 
DNHD1                 0.005   dynein heavy chain domain 1 isoform 1 
LOC100131669          0.005   PREDICTED: hypothetical protein 
LOC100131669          0.005   PREDICTED: hypothetical protein 
LOC100131669          0.005   PREDICTED: hypothetical protein 
CCNT2                 0.005   cyclin T2 isoform b 
CCNT2                 0.005   cyclin T2 isoform a 
GLTSCR1               0.005   glioma tumor suppressor candidate region gene 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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