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Search of human proteins with 169211938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211938 PREDICTED: hypothetical protein [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211484 PREDICTED: hypothetical protein [Homo sapiens] 218 1e-57
gi|169211938 PREDICTED: hypothetical protein [Homo sapiens] 218 1e-57
gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens] 33 0.049
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 31 0.24
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 28 1.2
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 28 1.2
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 28 1.2
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 28 1.6
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 28 1.6
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 28 1.6
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 28 1.6
gi|57528437 ladybird homeobox 2 [Homo sapiens] 28 1.6
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 28 1.6
gi|157909822 pragmin [Homo sapiens] 28 2.1
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 27 2.7
gi|169171483 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 27 3.5
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 27 3.5
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 27 3.5
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 27 3.5
gi|40288197 GATA binding protein 6 [Homo sapiens] 27 3.5
gi|4585710 ADAM metallopeptidase domain 11 preproprotein [Homo s... 27 4.6
gi|134019487 chromatin modifying protein 1A isoform 1 [Homo sapi... 26 6.0
gi|61743980 stabilin 2 precursor [Homo sapiens] 26 6.0
gi|158508495 sex comb on midleg-like 4 [Homo sapiens] 26 6.0
gi|239743173 PREDICTED: similar to solute carrier family 29 (nuc... 26 7.8
>gi|169211484 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 218 bits (554), Expect = 1e-57
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRC 60
MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRC
Sbjct: 1 MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRC 60
Query: 61 SANTHIQYPRKPKKPPELGTGSSLLWATHGLGKDQ 95
SANTHIQYPRKPKKPPELGTGSSLLWATHGLGKDQ
Sbjct: 61 SANTHIQYPRKPKKPPELGTGSSLLWATHGLGKDQ 95
>gi|169211938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 218 bits (554), Expect = 1e-57
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRC 60
MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRC
Sbjct: 1 MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRC 60
Query: 61 SANTHIQYPRKPKKPPELGTGSSLLWATHGLGKDQ 95
SANTHIQYPRKPKKPPELGTGSSLLWATHGLGKDQ
Sbjct: 61 SANTHIQYPRKPKKPPELGTGSSLLWATHGLGKDQ 95
>gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens]
Length = 301
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 6 WGPAEGSSG----SYC------WHQGCRPGHLLGGFP--TQAEGPPGRYQGDGAWCRPEF 53
WGPAEG++ +C W RPG+ LG P T PP +G G RP
Sbjct: 30 WGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGDSTRPSK 89
Query: 54 AG 55
G
Sbjct: 90 PG 91
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQ 67
P +G+ G + C G LG GP R +G G W + + RC
Sbjct: 362 PYQGTPGRDRPLRDCYSGPRLG----YLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAP 417
Query: 68 YPRKPKKPPELGTGSSLLWATHGLGKD 94
KP+ PP+ A H G+D
Sbjct: 418 EQGKPRLPPQ---------AWHDQGRD 435
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQ 67
P +G+ G + C G LG GP R +G G W + + RC
Sbjct: 690 PYQGTPGRDRPLRDCYSGPRLG----YLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAP 745
Query: 68 YPRKPKKPPELGTGSSLLWATHGLGKD 94
KP+ PP+ A H G+D
Sbjct: 746 EQGKPRLPPQ---------AWHDQGRD 763
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQ 67
P +G+ G + C G LG GP R +G G W + + RC
Sbjct: 690 PYQGTPGRDRPLRDCYSGPRLG----YLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAP 745
Query: 68 YPRKPKKPPELGTGSSLLWATHGLGKD 94
KP+ PP+ A H G+D
Sbjct: 746 EQGKPRLPPQ---------AWHDQGRD 763
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQ 67
P +G+ G + C G LG GP R +G G W + + RC
Sbjct: 690 PYQGTPGRDRPLRDCYSGPRLG----YLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAP 745
Query: 68 YPRKPKKPPELGTGSSLLWATHGLGKD 94
KP+ PP+ A H G+D
Sbjct: 746 EQGKPRLPPQ---------AWHDQGRD 763
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPP 39
P +G G YC G P GGFP PP
Sbjct: 92 PDDGGGGGYCCETGAPP----GGFPYSPGSPP 119
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 67 QYPRKPKKPPE--LGTGSSLLWATHGLGK 93
Q P+K K PP +G SSLL+++H LG+
Sbjct: 449 QVPQKVKYPPPFPVGPNSSLLFSSHALGE 477
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 7 GPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRG------SRC 60
GP G W RP P E P R + RPE A G SR
Sbjct: 1155 GPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRA 1214
Query: 61 SANTHIQYPRKPKKPPELG 79
+T + P KP G
Sbjct: 1215 GGDTALSGDGDPPKPERKG 1233
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 18 WHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQYPR 70
+H+G P PT A GP +G C+P GR A H +PR
Sbjct: 1259 YHKGALPCEC---HPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPR 1308
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 18 WHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQYPR 70
+H+G P PT A GP +G C+P GR A H +PR
Sbjct: 1259 YHKGALPCEC---HPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPR 1308
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPP--GRYQG 44
P G G + HQG PG+L G P +GPP YQG
Sbjct: 439 PPHGQYGGH--HQGM-PGYLPGAMPPYGQGPPMVPPYQG 474
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPP--GRYQG 44
P G G + HQG PG+L G P +GPP YQG
Sbjct: 423 PPHGQYGGH--HQGM-PGYLPGAMPPYGQGPPMVPPYQG 458
>gi|57528437 ladybird homeobox 2 [Homo sapiens]
Length = 194
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 22 CRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQYPRKPKKPPELGTG 81
CR G FP A P R G W R + SR N+ P++ P LG G
Sbjct: 19 CRGGRR--SFPPLAASRPAR-PGGWRWARRDLCKTASRAENNSQACRPQRRAGPDALGPG 75
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 8 PAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPP--GRYQG 44
P G G + HQG PG+L G P +GPP YQG
Sbjct: 408 PPHGQYGGH--HQGM-PGYLPGAMPPYGQGPPMVPPYQG 443
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 7 GPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHI 66
G +EG G YC C PG + +Q G GR+ G C P +G +CS
Sbjct: 246 GDSEG--GEYCSILDCCPGSPVAKAASQTAGSRGRHGGRD--CSPTCWEQG-KCSGPAE- 299
Query: 67 QYPRKPKKPPE 77
Q R P P E
Sbjct: 300 QEKRGPSFPKE 310
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 1 MEGLVWGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPG-RYQG 44
ME V GPA S C H G R P +EGPPG R+ G
Sbjct: 2367 MERRVPGPARSESPRACRHGGAR---WPASGPHVSEGPPGPRHHG 2408
>gi|169171483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 3 GLVWGPAEGSSG-----SYCWHQGCRPGHLLGGFPTQAEGP 38
GL W P G W Q C+PG GG P Q P
Sbjct: 94 GLFWPPQAQFFGPRGQAQQAWSQCCQPGGSTGGDPEQPSCP 134
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 12 SSGSYCWHQ---GCRPGHLLGGFPTQAEGPPGRYQGDGA 47
SS W+Q G P L+ G T+A G P R+ G G+
Sbjct: 55 SSSYLSWYQQKPGQAPRLLIYGASTRATGIPARFSGSGS 93
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 38 PPGRYQGDGAWCRP------EFAGRGSRCSANTH 65
PP R G W RP EFAGRG+ + TH
Sbjct: 157 PPLRRAASGEWKRPGGLTQGEFAGRGAGGARVTH 190
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 38 PPGRYQGDGA----WCRPEFAGRGSRCSANTHIQYPRKPKKPPELGTGSS 83
PP R +G W AGR SA T + +P++PPE G G S
Sbjct: 43 PPARLPRNGRRGPLWKGRGPAGRAPAASAETALP---RPREPPEPGAGPS 89
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 38 PPGRYQGDGAWCRP------EFAGRGSRCSANTH 65
PP R G W RP EFAGRG+ + TH
Sbjct: 157 PPLRRAASGEWKRPGGLTQGEFAGRGAGGARVTH 190
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 12 SSGSYCWHQ---GCRPGHLLGGFPTQAEGPPGRYQGDGA 47
SS W+Q G P L+ G T+A G P R+ G G+
Sbjct: 50 SSSYLSWYQQKPGQAPRLLIYGASTRATGIPARFSGSGS 88
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 45 DGAWCRPEFAGRGSRCSANTHIQYPRKPKKPPELGTGSS 83
DG WC P+ G ++++ R+P PP + SS
Sbjct: 5 DGGWCLPKRFGAAGADASDSRAFPAREPSTPPSPISSSS 43
>gi|4585710 ADAM metallopeptidase domain 11 preproprotein [Homo
sapiens]
Length = 769
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 18 WHQG----CRPGHLLGGFPTQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQYPRKPK 73
+HQG CR GH+ A+G Y DG C P RC + + P
Sbjct: 625 YHQGKELDCRGGHV-----QLADGSDLSYVEDGTACGPNMLCLDHRCLPASAFNFSTCP- 678
Query: 74 KPPELGTGSSLLWATHGL 91
G+G + + HG+
Sbjct: 679 -----GSGERRICSHHGV 691
>gi|134019487 chromatin modifying protein 1A isoform 1 [Homo
sapiens]
Length = 240
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 WGPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGPPGR-YQGDG 46
+GP + S G H G G L G A PGR Y GDG
Sbjct: 82 YGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRPYIGDG 123
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 26.2 bits (56), Expect = 6.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 49 CRPEFAGRGSRCSANTHIQYPRKPK 73
C+P + G G C + + + P+ PK
Sbjct: 1584 CKPNYIGDGFTCRGSIYQELPKNPK 1608
>gi|158508495 sex comb on midleg-like 4 [Homo sapiens]
Length = 414
Score = 26.2 bits (56), Expect = 6.0
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 7 GPAEGSSGSYCWHQGCRPGHLLGGFPTQAEGP------------PGRYQGDGAWCRPEFA 54
G SS YC Q HL GG A GP PG + R +
Sbjct: 259 GSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTS 318
Query: 55 GRGSRC--SANTHIQYPRKPK-KPPELGTGSSLLW 86
G+RC S + Q R+P+ + P T ++W
Sbjct: 319 LEGNRCASSPSQDAQDARRPRSRNPSAWTVEDVVW 353
>gi|239743173 PREDICTED: similar to solute carrier family 29
(nucleoside transporters), member 4 [Homo sapiens]
Length = 414
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 33 TQAEGPPGRYQGDGAWCRPEFAGRGSRCSANTHIQYP 69
TQ PPG + G P GR +C A+ H +P
Sbjct: 33 TQNSFPPGVHTATGQEEHPWEGGRKGQCCAHLHGPHP 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.140 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,730,224
Number of Sequences: 37866
Number of extensions: 324102
Number of successful extensions: 580
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 33
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.