Guide to the Human Genome
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Name: LOC100131391 Sequence: fasta or formatted (95aa) NCBI GI: 169211938
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {95aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          6           1
 C cysteine            4.2          4           1
 D aspartate           2.1          2           1
 E glutamate           5.3          5           1
 F phenylalanine       2.1          2           1
 G glycine            18.9         18           2
 H histidine           4.2          4           1
 I isoleucine          1.1          1           1
 K lysine              4.2          4           2
 L leucine             7.4          7           2
 M methionine          1.1          1           1
 N asparagine          1.1          1           1
 P proline            10.5         10           2
 Q glutamine           5.3          5           1
 R arginine            6.3          6           1
 S serine              7.4          7           2
 T threonine           4.2          4           1
 V valine              1.1          1           1
 W tryptophan          4.2          4           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131391          1.000   PREDICTED: hypothetical protein 
SCO1                  0.041   cytochrome oxidase deficient homolog 1 
LOC100293662          0.031   PREDICTED: hypothetical protein 
LOC100289444          0.031   PREDICTED: hypothetical protein 
LOC100289444          0.031   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.031   PREDICTED: hypothetical protein 
PTF1A                 0.016   pancreas specific transcription factor, 1a 
FAM120C               0.016   hypothetical protein LOC54954 
LMTK3                 0.016   lemur tyrosine kinase 3 
LAMA3                 0.016   laminin alpha 3 subunit isoform 1 
LAMA3                 0.016   laminin alpha 3 subunit isoform 3 
ZNF207                0.016   zinc finger protein 207 isoform c 
ZNF207                0.016   zinc finger protein 207 isoform a 
LBX2                  0.016   ladybird homeobox 2 
ZNF207                0.016   zinc finger protein 207 isoform b 
PRAGMIN               0.016   pragmin 
CACNA1A               0.010   calcium channel, alpha 1A subunit isoform 4 
LOC100134346          0.010   PREDICTED: hypothetical protein 
LOC100291786          0.010   PREDICTED: similar to hCG2043206 
LOC100289408          0.010   PREDICTED: hypothetical protein 
LOC100290265          0.010   PREDICTED: hypothetical protein XP_002346787 
LOC100289408          0.010   PREDICTED: hypothetical protein XP_002344217 
LOC440871             0.010   PREDICTED: similar to hCG2043206 
GATA6                 0.010   GATA binding protein 6 
ADAM11                0.010   ADAM metallopeptidase domain 11 preproprotein 
CHMP1A                0.005   chromatin modifying protein 1A isoform 1 
STAB2                 0.005   stabilin 2 precursor 
SCML4                 0.005   sex comb on midleg-like 4 
LOC402509             0.005   PREDICTED: similar to solute carrier family 29 (nuc...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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