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Name: LOC402509 Sequence: fasta or formatted (414aa) NCBI GI: 239743173
Description:

PREDICTED: similar to solute carrier family 29 (nucleoside transporters), member 4

Referenced in:

Solute Carrier Families

Other entries for this name:
alt mRNA [414aa] PREDICTED: similar to solute carrier family 29 (nucleoside transp...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         33           2
 C cysteine            3.9         16           2
 D aspartate           3.1         13           1
 E glutamate           2.9         12           2
 F phenylalanine       4.1         17           2
 G glycine             9.2         38           2
 H histidine           4.6         19           2
 I isoleucine          4.1         17           1
 K lysine              1.4          6           1
 L leucine            11.8         49           3
 M methionine          2.7         11           1
 N asparagine          1.4          6           1
 P proline             8.2         34           3
 Q glutamine           2.9         12           2
 R arginine            6.8         28           3
 S serine              7.7         32           1
 T threonine           5.1         21           2
 V valine              7.5         31           2
 W tryptophan          2.2          9           1
 Y tyrosine            2.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to solute carrier family 29 (nuc... 
LOC402509             1.000   PREDICTED: similar to solute carrier family 29 (nuc...
LOC100132308          0.748   PREDICTED: similar to solute carrier family 29 (nuc...
LOC100132308          0.748   PREDICTED: similar to solute carrier family 29 (nuc...
SLC29A4               0.691   solute carrier family 29 (nucleoside transporters),...
SLC29A4               0.691   solute carrier family 29 (nucleoside transporters),...
LOC100292708          0.078   PREDICTED: hypothetical protein 
LOC100291422          0.077   PREDICTED: hypothetical protein XP_002346925 
SLC29A2               0.062   solute carrier family 29 (nucleoside transporters), ...
SLC29A1               0.044   equilibrative nucleoside transporter 1 
SLC29A1               0.044   equilibrative nucleoside transporter 1 
SLC29A1               0.044   equilibrative nucleoside transporter 1 
SLC29A1               0.044   equilibrative nucleoside transporter 1 
SLC29A1               0.044   equilibrative nucleoside transporter 1 
SLC29A3               0.032   solute carrier family 29 (nucleoside transporters),...
SLC22A2               0.017   solute carrier family 22 member 2 
TBRG4                 0.007   cell cycle progression 2 protein isoform 2 
TBRG4                 0.007   cell cycle progression 2 protein isoform 2 
TBRG4                 0.007   cell cycle progression 2 protein isoform 1 
PKD2                  0.006   polycystin 2 
LOC100287514          0.006   PREDICTED: hypothetical protein XP_002343754 
SLC22A3               0.006   solute carrier family 22 member 3 
POU3F3                0.006   POU class 3 homeobox 3 
LENG8                 0.006   leukocyte receptor cluster member 8 
RNF111                0.005   ring finger protein 111 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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