Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC653052 Sequence: fasta or formatted (460aa) NCBI GI: 169171014
Description:

PREDICTED: similar to homeodomain interacting protein kinase 2

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [264aa] PREDICTED: similar to homeodomain interacting protein kinase 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         24           1
 C cysteine            2.2         10           2
 D aspartate           2.8         13           2
 E glutamate           5.7         26           2
 F phenylalanine       2.4         11           1
 G glycine             6.1         28           2
 H histidine           2.8         13           1
 I isoleucine          4.1         19           2
 K lysine              5.4         25           2
 L leucine             8.0         37           2
 M methionine          2.0          9           1
 N asparagine          3.7         17           2
 P proline             7.0         32           2
 Q glutamine           6.3         29           2
 R arginine            5.0         23           2
 S serine             12.4         57           2
 T threonine           6.7         31           3
 V valine              7.4         34           2
 W tryptophan          1.1          5           1
 Y tyrosine            3.7         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to homeodomain interacting prote... 
HIPK2                 0.785   homeodomain interacting protein kinase 2 isoform 2 ...
HIPK2                 0.785   homeodomain interacting protein kinase 2 isoform 1 ...
HIPK1                 0.533   homeodomain-interacting protein kinase 1 isoform 1 [...
HIPK1                 0.533   homeodomain-interacting protein kinase 1 isoform 2 [...
LOC653052             0.526   PREDICTED: similar to homeodomain interacting prote...
HIPK3                 0.454   homeodomain interacting protein kinase 3 isoform 2 ...
HIPK3                 0.454   homeodomain interacting protein kinase 3 isoform 1 ...
HIPK4                 0.161   homeodomain interacting protein kinase 4 
DYRK1B                0.125   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.125   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.125   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1A                0.124   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.124   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.124   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.124   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.124   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK4                 0.123   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK2                 0.118   dual-specificity tyrosine-(Y)-phosphorylation regul...
DYRK2                 0.118   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK3                 0.105   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK3                 0.105   dual-specificity tyrosine-(Y)-phosphorylation regula...
PRPF4B                0.098   serine/threonine-protein kinase PRP4K 
CLK4                  0.096   CDC-like kinase 4 
CLK1                  0.096   CDC-like kinase 1 isoform 2 
CLK1                  0.096   CDC-like kinase 1 isoform 1 
CLK2                  0.093   CDC-like kinase 2 
CLK3                  0.092   CDC-like kinase 3 isoform a 
CLK3                  0.092   CDC-like kinase 3 isoform b 
CDKL3                 0.061   cyclin-dependent kinase-like 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press