Search of human proteins with 169210012

Search of human proteins with 169210012

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1
[Homo sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1 [...   204   2e-53
gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]                  189   5e-49
gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [H...   164   2e-41
gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [H...   156   3e-39
gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo ...   156   3e-39
gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo ...   156   3e-39
gi|6005757 chromatin-specific transcription elongation factor la...    28   1.2  
gi|5730023 RuvB-like 2 [Homo sapiens]                                  28   2.0  
gi|67906195 ankyrin repeat and sterile alpha motif domain contai...    28   2.0  
gi|4885217 excision repair cross-complementing rodent repair def...    27   2.6  
gi|167614502 protein phosphatase 1, regulatory (inhibitor) subun...    27   2.6  
gi|42822880 beta-lactamase-like [Homo sapiens]                         27   3.5  
gi|191252801 WDFY family member 4 [Homo sapiens]                       27   4.5  
gi|60499021 ferrochelatase isoform b precursor [Homo sapiens]          26   5.9  
gi|31542528 NECAP endocytosis associated 1 [Homo sapiens]              26   5.9  
gi|33667061 regulating synaptic membrane exocytosis 4 [Homo sapi...    26   5.9  
gi|110347463 human immunodeficiency virus type I enhancer bindin...    26   7.7  

>gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1
           [Homo sapiens]
          Length = 103

 Score =  204 bits (518), Expect = 2e-53
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
           MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE
Sbjct: 1   MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60

Query: 61  IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD 103
           IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD
Sbjct: 61  IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD 103


>gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]
          Length = 102

 Score =  189 bits (479), Expect = 5e-49
 Identities = 96/103 (93%), Positives = 101/103 (98%), Gaps = 1/103 (0%)

Query: 1   MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
           MAGQAFRK FLPLF+RVLVERSAAETVT+GGIMLPEKSQGKVLQA VVAVGSGSKGKGGE
Sbjct: 1   MAGQAFRK-FLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGE 59

Query: 61  IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD 103
           IQPVS+KVGDKVLLPE+GGTKV+LDDKDYFLFRDGDILGKYVD
Sbjct: 60  IQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


>gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
           sapiens]
          Length = 102

 Score =  164 bits (414), Expect = 2e-41
 Identities = 84/103 (81%), Positives = 92/103 (89%), Gaps = 1/103 (0%)

Query: 1   MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
           MAGQ FRK FLPL ++   ERS AETVT+GGIMLPEKSQGKV QA VVAVGSGSKGKGGE
Sbjct: 1   MAGQTFRK-FLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGE 59

Query: 61  IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD 103
            QPVS KVGDKVLLP++GGTKV+LDDKDYFLFRDGDILGK+V+
Sbjct: 60  GQPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE 102


>gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1
          [Homo sapiens]
          Length = 175

 Score =  156 bits (395), Expect = 3e-39
 Identities = 82/98 (83%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1  MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
          MAGQAFRK FL LF+RV VER A  TVT+GGIMLPEKSQGKVLQA  VAVGSGSKGKGGE
Sbjct: 1  MAGQAFRK-FLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGE 59

Query: 61 IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDIL 98
          IQPVSM+VGDK LL E+GGT+V+LDDKDYFLFRDGDIL
Sbjct: 60 IQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
          sapiens]
          Length = 244

 Score =  156 bits (395), Expect = 3e-39
 Identities = 82/98 (83%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1  MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
          MAGQAFRK FL LF+RV VER A  TVT+GGIMLPEKSQGKVLQA  VAVGSGSKGKGGE
Sbjct: 1  MAGQAFRK-FLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGE 59

Query: 61 IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDIL 98
          IQPVSM+VGDK LL E+GGT+V+LDDKDYFLFRDGDIL
Sbjct: 60 IQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo
          sapiens]
          Length = 175

 Score =  156 bits (395), Expect = 3e-39
 Identities = 82/98 (83%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1  MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60
          MAGQAFRK FL LF+RV VER A  TVT+GGIMLPEKSQGKVLQA  VAVGSGSKGKGGE
Sbjct: 1  MAGQAFRK-FLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGE 59

Query: 61 IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDIL 98
          IQPVSM+VGDK LL E+GGT+V+LDDKDYFLFRDGDIL
Sbjct: 60 IQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|6005757 chromatin-specific transcription elongation factor large
           subunit [Homo sapiens]
          Length = 1047

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 30  GGIMLPEKSQGKVLQAIVVAVGSG------SKGKGGEIQPVSMKVGDKVLLPEHGGTKVI 83
           G +++  K+Q K+ + +V ++  G       +GK  E +  ++ +GD VL+ E G   V+
Sbjct: 359 GSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVL 418

Query: 84  LDDK 87
              K
Sbjct: 419 TSVK 422


>gi|5730023 RuvB-like 2 [Homo sapiens]
          Length = 463

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 15  ERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGEIQPVSMKVGDKVLL 74
           E V +   A   +TR G+   E S    +Q I  A     K KG E+Q   +K    + L
Sbjct: 378 EDVEMSEDAYTVLTRIGL---ETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 434

Query: 75  PEHGGTKVILDDKDYFLFRD 94
            E   T+ + + +D FLF +
Sbjct: 435 DESRSTQYMKEYQDAFLFNE 454


>gi|67906195 ankyrin repeat and sterile alpha motif domain
           containing 6 [Homo sapiens]
          Length = 871

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 8   KKFLPLFERVLVERSAAETVTRGGIM-LPEKSQGKVLQAIVVAVGSGSKGKGGEIQ 62
           +K+ P+FE   V+  A  T+T G +  L  K+ G   Q I+ A+   + GKG E Q
Sbjct: 788 EKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS-RQQILAAISELNAGKGRERQ 842


>gi|4885217 excision repair cross-complementing rodent repair
           deficiency, complementation group 4 [Homo sapiens]
          Length = 916

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 10/20 (50%), Positives = 17/20 (85%)

Query: 57  KGGEIQPVSMKVGDKVLLPE 76
           +G +I+PV+++VGD +L PE
Sbjct: 702 RGIDIEPVTLEVGDYILTPE 721


>gi|167614502 protein phosphatase 1, regulatory (inhibitor) subunit
           3A [Homo sapiens]
          Length = 1122

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 13  LFERVLVERSAAETVTRGGIMLPEK-SQGKVLQAIVVAVGSGSKGKGGEIQPVSMKVGDK 71
           LF+R L   S+AE+  +G     EK S G             +    GEI+P        
Sbjct: 369 LFQRSLSPSSSAESSVKGDFYCNEKYSSG---DDCTHQPSEETTSNMGEIKPSLGDTSSD 425

Query: 72  VLLPEHGGTKVILDD 86
            L+  H G+K +LDD
Sbjct: 426 ELVQLHTGSKEVLDD 440


>gi|42822880 beta-lactamase-like [Homo sapiens]
          Length = 279

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 18/106 (16%)

Query: 14  FERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGEIQPVS-------- 65
           F+RV V  + AE + RG     E         +V A   G + +   +Q V         
Sbjct: 95  FDRVAVHHAEAEALARGDNF--ETVTWLSDSEVVRAPSPGWRARQFRVQAVQPTLILQDG 152

Query: 66  --MKVGDKVL----LPEHGGTKVILDDKDYFLFRDGDIL--GKYVD 103
             + +GD+ L    +P H    + L DKD  +   GD++  G  +D
Sbjct: 153 DVINLGDRQLTVMHMPGHSRGSICLHDKDRKILFSGDVVYDGSLID 198


>gi|191252801 WDFY family member 4 [Homo sapiens]
          Length = 3184

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 13  LFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGEIQPVSMKVGDKV 72
           L ++  + R +   V+  G+  PE+    V+  IVV +  GS             V + V
Sbjct: 517 LRKQAKIMRKSGNKVSTPGVQDPERELTCVMLRIVVTLLKGS-------------VRNAV 563

Query: 73  LLPEHGGT---KVILDDKDY 89
           +L +HG     K+ LDD+ Y
Sbjct: 564 VLKDHGMVPFIKIFLDDECY 583


>gi|60499021 ferrochelatase isoform b precursor [Homo sapiens]
          Length = 423

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 40 GKVLQAIVVAVGSGSKGKGGEIQPVSMKVGDKVLLPEHGGTKVILDDKDYF--LFRDGDI 97
          G    A+       ++G   ++QP   K    +L+   GG + + D  D+   LF D D+
Sbjct: 39 GAAAAAVTTETAQHAQGAKPQVQPQKRKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDL 98

Query: 98 L 98
          +
Sbjct: 99 M 99


>gi|31542528 NECAP endocytosis associated 1 [Homo sapiens]
          Length = 275

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 44  QAIVVAVGSGSKGKGGEIQPVSMKVGDKVLLPEHGGTKVIL 84
           Q I + +G+ +  KGG  +P + + G   LLP   G KV +
Sbjct: 157 QTIKLCIGNITNKKGGASKPRTARGGGLSLLPPPPGGKVTI 197


>gi|33667061 regulating synaptic membrane exocytosis 4 [Homo
           sapiens]
          Length = 269

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 15  ERVLVERSAAETVTRGGIMLPEKSQGKVLQAIV 47
           ++  V R + + +    ++ PE  QGKVLQ IV
Sbjct: 168 KKTKVARKSLDPLYNQVLLFPESPQGKVLQVIV 200


>gi|110347463 human immunodeficiency virus type I enhancer binding
            protein 2 [Homo sapiens]
          Length = 2446

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/86 (24%), Positives = 36/86 (41%)

Query: 7    RKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGEIQPVSM 66
            R+   P  ER  +    A +  R     P  S G+ LQA  + +G  +  +G    P   
Sbjct: 2126 RRDLSPRRERRYMTTIRAPSPRRALYHNPPLSMGQYLQAEPIVLGPPNLRRGLPQVPYFS 2185

Query: 67   KVGDKVLLPEHGGTKVILDDKDYFLF 92
              GD+    EH G+ +  +  + ++F
Sbjct: 2186 LYGDQEGAYEHPGSSLFPEGPNDYVF 2211


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.141    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,732,362
Number of Sequences: 37866
Number of extensions: 151739
Number of successful extensions: 352
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 17
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.