Guide to the Human Genome
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Name: RIMS4 Sequence: fasta or formatted (269aa) NCBI GI: 33667061
Description:

regulating synaptic membrane exocytosis 4

Referenced in:

PDZ Domain
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         22           2
 C cysteine            1.5          4           1
 D aspartate           4.5         12           2
 E glutamate           6.7         18           2
 F phenylalanine       3.3          9           1
 G glycine             8.9         24           2
 H histidine           0.4          1           1
 I isoleucine          3.7         10           2
 K lysine              4.5         12           3
 L leucine            11.5         31           2
 M methionine          3.3          9           1
 N asparagine          3.0          8           1
 P proline             4.8         13           1
 Q glutamine           5.6         15           1
 R arginine            5.9         16           2
 S serine              9.7         26           2
 T threonine           5.2         14           2
 V valine              5.6         15           1
 W tryptophan          0.7          2           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulating synaptic membrane exocytosis 4 
RIMS2                 0.595   regulating synaptic membrane exocytosis 2 isoform a...
RIMS2                 0.595   regulating synaptic membrane exocytosis 2 isoform b...
RIMS1                 0.573   regulating synaptic membrane exocytosis 1 
RIMS3                 0.530   regulating synaptic membrane exocytosis 3 
PCLO                  0.099   piccolo isoform 1 
PIK3C2B               0.083   phosphoinositide-3-kinase, class 2 beta polypeptide...
PIK3C2A               0.067   phosphoinositide-3-kinase, class 2 alpha polypeptid...
SYT7                  0.063   synaptotagmin VII 
SYTL1                 0.055   synaptotagmin-like 1 
PCLO                  0.053   piccolo isoform 2 
SYTL2                 0.053   synaptotagmin-like 2 isoform b 
SYTL2                 0.053   synaptotagmin-like 2 isoform a 
SYTL2                 0.053   synaptotagmin-like 2 isoform i 
SYTL2                 0.053   synaptotagmin-like 2 isoform h 
SYTL2                 0.053   synaptotagmin-like 2 isoform g 
SYTL2                 0.053   synaptotagmin-like 2 isoform f 
SYTL2                 0.053   synaptotagmin-like 2 isoform e 
SYTL2                 0.053   synaptotagmin-like 2 isoform d 
SYTL2                 0.053   synaptotagmin-like 2 isoform c 
SYTL3                 0.047   synaptotagmin-like 3 
SYTL4                 0.045   synaptotagmin-like 4 
SYTL4                 0.045   synaptotagmin-like 4 
SYT6                  0.043   synaptotagmin VI 
SYT3                  0.042   synaptotagmin III 
SYT3                  0.042   synaptotagmin III 
SYT3                  0.042   synaptotagmin III 
SYTL5                 0.040   synaptotagmin-like 5 isoform 1 
SYTL5                 0.040   synaptotagmin-like 5 isoform 2 
SYTL5                 0.040   synaptotagmin-like 5 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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