Guide to the Human Genome
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Name: LOC100292290 Sequence: fasta or formatted (102aa) NCBI GI: 239752758
Description:

PREDICTED: similar to heat shock 10kDa protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          4           1
 C cysteine            0.0          0           0
 D aspartate           5.9          6           2
 E glutamate           4.9          5           1
 F phenylalanine       5.9          6           1
 G glycine            14.7         15           2
 H histidine           1.0          1           1
 I isoleucine          2.0          2           1
 K lysine             13.7         14           2
 L leucine             7.8          8           2
 M methionine          2.0          2           1
 N asparagine          0.0          0           0
 P proline             3.9          4           1
 Q glutamine           4.9          5           1
 R arginine            5.9          6           1
 S serine              4.9          5           1
 T threonine           4.9          5           1
 V valine             11.8         12           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to heat shock 10kDa protein 1 [H... 
HSPE1                 0.817   heat shock 10kDa protein 1 
LOC100132346          0.772   PREDICTED: similar to heat shock 10 kDa protein 1 [...
LOC100292829          0.661   PREDICTED: similar to heat shock 10kDa protein 1 [H...
LOC100287159          0.661   PREDICTED: hypothetical protein XP_002342349 
LOC100290437          0.650   PREDICTED: hypothetical protein XP_002346492 
KIAA1522              0.028   hypothetical protein LOC57648 
XYLT1                 0.011   xylosyltransferase I 
BTBD12                0.011   BTB (POZ) domain containing 12 
HMHA1                 0.006   minor histocompatibility antigen HA-1 
SREBF1                0.006   sterol regulatory element binding transcription fact...
SREBF1                0.006   sterol regulatory element binding transcription fact...
GOLPH3L               0.006   Golgi phosphoprotein 3-like 
LOC100292488          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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