Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC346702 Sequence: fasta or formatted (213aa) NCBI GI: 169172917
Description:

PREDICTED: hypothetical protein LOC346702

Not currently referenced in the text

Other entries for this name:
alt prot {213aa} PREDICTED: similar to hCG1643218
alt prot {213aa} PREDICTED: similar to hCG1643218
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         10           2
 C cysteine            3.8          8           1
 D aspartate           4.7         10           2
 E glutamate           3.3          7           3
 F phenylalanine       4.2          9           1
 G glycine             6.6         14           2
 H histidine           3.3          7           1
 I isoleucine          4.7         10           2
 K lysine              4.2          9           1
 L leucine             8.5         18           4
 M methionine          3.8          8           1
 N asparagine          4.2          9           1
 P proline             4.2          9           2
 Q glutamine           6.1         13           1
 R arginine            6.6         14           2
 S serine              8.0         17           2
 T threonine           5.2         11           2
 V valine              8.5         18           2
 W tryptophan          3.8          8           3
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC346702 
LOC346702             0.991   PREDICTED: similar to hCG1643218 
LOC346702             0.991   PREDICTED: similar to hCG1643218 
UNQ9391               0.296   hypothetical protein LOC203074 
KLKB1                 0.211   plasma kallikrein B1 precursor 
F11                   0.188   coagulation factor XI precursor 
TMPRSS3               0.181   transmembrane protease, serine 3 isoform 1 
TMPRSS13              0.174   transmembrane protease, serine 13 
PRSS27                0.167   marapsin 
KLK6                  0.157   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.157   kallikrein-related peptidase 6 isoform A preproprotei...
PRSS36                0.155   protease, serine, 36 
PRSS12                0.153   neurotrypsin precursor 
TESSP1                0.150   testis-specific serine protease 1 
LOC100293486          0.150   PREDICTED: similar to hCG2041452 
LOC100291379          0.150   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.150   PREDICTED: hypothetical protein XP_002342392 
TMPRSS5               0.150   transmembrane protease, serine 5 
PRSS7                 0.148   enterokinase precursor 
MPN2                  0.146   marapsin 2 
HPN                   0.143   hepsin 
HPN                   0.143   hepsin 
PLAT                  0.143   plasminogen activator, tissue isoform 1 preproprotein...
PLAT                  0.143   plasminogen activator, tissue isoform 3 preproprotei...
TPSAB1                0.141   tryptase alpha/beta 1 precursor 
TPSB2                 0.141   tryptase beta 2 precursor 
TMPRSS9               0.138   transmembrane protease, serine 9 
TMPRSS12              0.138   transmembrane protease, serine 12 
F9                    0.134   coagulation factor IX preproprotein 
ST14                  0.134   matriptase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press