Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC346702 Sequence: fasta or formatted (213aa) NCBI GI: 239749352
Description:

PREDICTED: similar to hCG1643218

Not currently referenced in the text

Other entries for this name:
alt prot {213aa} PREDICTED: hypothetical protein LOC346702
alt mRNA {213aa} PREDICTED: similar to hCG1643218
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         10           2
 C cysteine            3.8          8           1
 D aspartate           4.2          9           2
 E glutamate           3.3          7           3
 F phenylalanine       4.2          9           1
 G glycine             6.6         14           2
 H histidine           3.3          7           1
 I isoleucine          4.2          9           2
 K lysine              4.2          9           1
 L leucine             8.5         18           4
 M methionine          3.8          8           1
 N asparagine          4.2          9           1
 P proline             4.2          9           2
 Q glutamine           6.1         13           1
 R arginine            6.6         14           2
 S serine              8.0         17           2
 T threonine           5.2         11           2
 V valine              8.9         19           2
 W tryptophan          3.8          8           3
 Y tyrosine            2.3          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1643218 
LOC346702             1.000   PREDICTED: similar to hCG1643218 
LOC346702             0.988   PREDICTED: hypothetical protein LOC346702 
UNQ9391               0.286   hypothetical protein LOC203074 
KLKB1                 0.208   plasma kallikrein B1 precursor 
F11                   0.185   coagulation factor XI precursor 
TMPRSS3               0.180   transmembrane protease, serine 3 isoform 1 
TMPRSS13              0.169   transmembrane protease, serine 13 
PRSS27                0.169   marapsin 
TMPRSS5               0.152   transmembrane protease, serine 5 
PRSS7                 0.150   enterokinase precursor 
PRSS36                0.150   protease, serine, 36 
KLK6                  0.148   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.148   kallikrein-related peptidase 6 isoform A preproprotei...
PRSS12                0.148   neurotrypsin precursor 
LOC100293486          0.145   PREDICTED: similar to hCG2041452 
LOC100291379          0.145   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.145   PREDICTED: hypothetical protein XP_002342392 
MPN2                  0.145   marapsin 2 
TESSP1                0.143   testis-specific serine protease 1 
HPN                   0.143   hepsin 
HPN                   0.143   hepsin 
TMPRSS9               0.143   transmembrane protease, serine 9 
TPSAB1                0.141   tryptase alpha/beta 1 precursor 
TPSB2                 0.141   tryptase beta 2 precursor 
TMPRSS7               0.138   transmembrane protease, serine 7 
PLAT                  0.138   plasminogen activator, tissue isoform 1 preproprotein...
PLAT                  0.138   plasminogen activator, tissue isoform 3 preproprotei...
TMPRSS6               0.138   transmembrane protease, serine 6 
ST14                  0.138   matriptase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press