Guide to the Human Genome
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Search of human proteins with 11096340

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
         (253 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93588650 claudin domain containing 1 protein isoform a [Homo ...   529   e-151
gi|93588620 claudin domain containing 1 protein isoform b [Homo ...   529   e-151
gi|93588614 claudin domain containing 1 protein isoform a [Homo ...   529   e-151
gi|93588624 claudin domain containing 1 protein isoform a [Homo ...   529   e-151
gi|11096340 claudin domain containing 1 protein isoform a [Homo ...   529   e-151
gi|93588657 claudin domain containing 1 protein isoform d [Homo ...   326   1e-89
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]       57   1e-08
gi|226437592 transmembrane protein 114 [Homo sapiens]                  57   1e-08
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo...    56   3e-08
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]       51   8e-07
gi|4502875 claudin 3 [Homo sapiens]                                    39   0.006
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]            36   0.028
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]            36   0.028
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]            36   0.028
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]            36   0.028
gi|52218860 olfactory receptor, family 11, subfamily H, member 6...    36   0.028
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is...    36   0.037
gi|4505907 peripheral myelin protein 22 [Homo sapiens]                 35   0.048
gi|24430165 peripheral myelin protein 22 [Homo sapiens]                35   0.048
gi|24430163 peripheral myelin protein 22 [Homo sapiens]                35   0.048
gi|183979973 claudin 19 isoform a [Homo sapiens]                       34   0.11 
gi|183979975 claudin 19 isoform b [Homo sapiens]                       34   0.11 
gi|4503561 epithelial membrane protein 2 [Homo sapiens]                33   0.24 
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso...    32   0.41 
gi|9966781 claudin 2 [Homo sapiens]                                    31   1.2  
gi|52546691 olfactory receptor, family 11, subfamily H, member 1...    31   1.2  
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho...    31   1.2  
gi|61656203 olfactory receptor, family 11, subfamily H, member 1...    30   1.5  
gi|7656981 claudin 15 [Homo sapiens]                                   30   2.6  
gi|58331177 ermin, ERM-like protein isoform a [Homo sapiens]           29   3.4  

>gi|93588650 claudin domain containing 1 protein isoform a [Homo
           sapiens]
          Length = 253

 Score =  529 bits (1363), Expect = e-151
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60
           MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD
Sbjct: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60

Query: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120
           EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV
Sbjct: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120

Query: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180
           DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA
Sbjct: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180

Query: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240
           GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN
Sbjct: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240

Query: 241 RKEYTLMKAYRVA 253
           RKEYTLMKAYRVA
Sbjct: 241 RKEYTLMKAYRVA 253


>gi|93588620 claudin domain containing 1 protein isoform b [Homo
           sapiens]
          Length = 276

 Score =  529 bits (1363), Expect = e-151
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60
           MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD
Sbjct: 24  MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 83

Query: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120
           EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV
Sbjct: 84  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 143

Query: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180
           DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA
Sbjct: 144 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 203

Query: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240
           GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN
Sbjct: 204 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 263

Query: 241 RKEYTLMKAYRVA 253
           RKEYTLMKAYRVA
Sbjct: 264 RKEYTLMKAYRVA 276


>gi|93588614 claudin domain containing 1 protein isoform a [Homo
           sapiens]
          Length = 253

 Score =  529 bits (1363), Expect = e-151
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60
           MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD
Sbjct: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60

Query: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120
           EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV
Sbjct: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120

Query: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180
           DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA
Sbjct: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180

Query: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240
           GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN
Sbjct: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240

Query: 241 RKEYTLMKAYRVA 253
           RKEYTLMKAYRVA
Sbjct: 241 RKEYTLMKAYRVA 253


>gi|93588624 claudin domain containing 1 protein isoform a [Homo
           sapiens]
          Length = 253

 Score =  529 bits (1363), Expect = e-151
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60
           MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD
Sbjct: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60

Query: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120
           EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV
Sbjct: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120

Query: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180
           DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA
Sbjct: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180

Query: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240
           GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN
Sbjct: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240

Query: 241 RKEYTLMKAYRVA 253
           RKEYTLMKAYRVA
Sbjct: 241 RKEYTLMKAYRVA 253


>gi|11096340 claudin domain containing 1 protein isoform a [Homo
           sapiens]
          Length = 253

 Score =  529 bits (1363), Expect = e-151
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60
           MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD
Sbjct: 1   MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEAD 60

Query: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120
           EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV
Sbjct: 61  EKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFV 120

Query: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180
           DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA
Sbjct: 121 DPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLA 180

Query: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240
           GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN
Sbjct: 181 GLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTN 240

Query: 241 RKEYTLMKAYRVA 253
           RKEYTLMKAYRVA
Sbjct: 241 RKEYTLMKAYRVA 253


>gi|93588657 claudin domain containing 1 protein isoform d [Homo
           sapiens]
          Length = 158

 Score =  326 bits (835), Expect = 1e-89
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 98  ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 157
           ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI
Sbjct: 3   ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 62

Query: 158 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 217
           GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC
Sbjct: 63  GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 122

Query: 218 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 253
           LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 123 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158


>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 51/238 (21%)

Query: 12  ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
           A +   +S + +AA+IGTDFWY    E        + DL  SI           ++  + 
Sbjct: 12  AALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 61

Query: 68  LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
           L  ++G   LWR C  +         P R E+          T++E   +     G    
Sbjct: 62  LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 104

Query: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
                 T++     LLP +SL LM FG + G  + + ++    + TGIL L   + TL  
Sbjct: 105 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 153

Query: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
           +S Y+A         + LL +K  L D V   FGWS  L  +S   + +  A F+ AA
Sbjct: 154 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 210


>gi|226437592 transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 51/238 (21%)

Query: 12  ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
           A +   +S + +AA+IGTDFWY    E        + DL  SI           ++  + 
Sbjct: 12  AALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 61

Query: 68  LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
           L  ++G   LWR C  +         P R E+          T++E   +     G    
Sbjct: 62  LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 104

Query: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
                 T++     LLP +SL LM FG + G  + + ++    + TGIL L   + TL  
Sbjct: 105 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 153

Query: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
           +S Y+A         + LL +K  L D V   FGWS  L  +S   + +  A F+ AA
Sbjct: 154 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 210


>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
           sapiens]
          Length = 217

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 51/238 (21%)

Query: 12  ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
           A +   +S + +AA+IGT+FWY    E        + DL  SI           ++  + 
Sbjct: 6   AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 55

Query: 68  LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
           L  ++G   LWR C  +         P R E+          T++E   +     G    
Sbjct: 56  LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 98

Query: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
                 T++     LLP +SL LM FG + G  + + ++    + TGIL L   + TL  
Sbjct: 99  ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 147

Query: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
           +S Y+A         + LL +K  L D V   FGWS  L  +S   + +  A F+ AA
Sbjct: 148 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204


>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
          Length = 122

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)

Query: 142 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 193
           LLP +SL LM FG + G  + + ++    + TGIL L   + TL  +S Y+A        
Sbjct: 8   LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66

Query: 194 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
            + LL +K  L D V   FGWS  L  +S   + +  A F+ AA
Sbjct: 67  ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109


>gi|4502875 claudin 3 [Homo sapiens]
          Length = 220

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 146 VSLGLMCFGALIGLCACICRSLYP--------TIATGILHLLAGLCTLGSVSCYVAGIEL 197
           V++ L  FG L+ L    C +           TI  G+L LLA L TL  VS     I  
Sbjct: 85  VAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFLLAALLTLVPVSWSANTIIR 144

Query: 198 LHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMK 248
                 +P+    E G    +   +A LQ +  AL   +     K+YT  K
Sbjct: 145 DFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGALLCCSCPPREKKYTATK 195


>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
           +++ ++ FG +IG+  C           G+L L+ G   + S+   VAGI     +    
Sbjct: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245

Query: 204 ---LPDNVSGEFGWS-FC 217
              LPD++S  +GWS FC
Sbjct: 246 LYGLPDDISHGYGWSMFC 263


>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
           +++ ++ FG +IG+  C           G+L L+ G   + S+   VAGI     +    
Sbjct: 78  MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137

Query: 204 ---LPDNVSGEFGWS-FC 217
              LPD++S  +GWS FC
Sbjct: 138 LYGLPDDISHGYGWSMFC 155


>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
           +++ ++ FG +IG+  C           G+L L+ G   + S+   VAGI     +    
Sbjct: 78  MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137

Query: 204 ---LPDNVSGEFGWS-FC 217
              LPD++S  +GWS FC
Sbjct: 138 LYGLPDDISHGYGWSMFC 155


>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
           +++ ++ FG +IG+  C           G+L L+ G   + S+   VAGI     +    
Sbjct: 78  MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137

Query: 204 ---LPDNVSGEFGWS-FC 217
              LPD++S  +GWS FC
Sbjct: 138 LYGLPDDISHGYGWSMFC 155


>gi|52218860 olfactory receptor, family 11, subfamily H, member 6
           [Homo sapiens]
          Length = 330

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 163 ICRSL-YPTIATG-ILHLLAGLCTLGSVSCYVAGIELLHQKL----ELPDNVSGEFGWSF 216
           ICR L YP+I TG    +L  +C +G   CY   I L+ Q       + D++  + G  F
Sbjct: 144 ICRPLHYPSIMTGKFCIILVCVCWVGGFLCYPVPIVLISQLPFCGPNIIDHLVCDPGPLF 203

Query: 217 CLACVSAP 224
            LAC+SAP
Sbjct: 204 ALACISAP 211


>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
           isoform a [Homo sapiens]
          Length = 275

 Score = 35.8 bits (81), Expect = 0.037
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 144 PFVSLGLMCFGALIGLCACIC--RSLYPTIATGILHLLAGLCTLGSVSCYVAGI--ELLH 199
           P VSL  M  G ++     I   R++   ++ GI  +L+GL  +  +  Y++ I  E+L+
Sbjct: 104 PLVSLFFMFIGFILNNIGHIRPHRTILAFVS-GIFFILSGLSLVVGLVLYISSINDEMLN 162

Query: 200 QKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYR 251
           +  +     + ++GWSF  A +S  L   A  + ++      K YT    YR
Sbjct: 163 RTKDAETYFNYKYGWSFAFAAISFLLTESAGVMSVYLF---MKRYTAEDMYR 211


>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
          Length = 160

 Score = 35.4 bits (80), Expect = 0.048
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 173 TGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASAL 232
           TGI  +LAGLC + + + Y     + H +  L  + S  +G+++ LA V+ PL  ++  +
Sbjct: 99  TGIFQILAGLCVMSAAAIYT----VRHPEWHLNSDYS--YGFAYILAWVAFPLALLSGVI 152

Query: 233 FI 234
           ++
Sbjct: 153 YV 154


>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
          Length = 160

 Score = 35.4 bits (80), Expect = 0.048
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 173 TGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASAL 232
           TGI  +LAGLC + + + Y     + H +  L  + S  +G+++ LA V+ PL  ++  +
Sbjct: 99  TGIFQILAGLCVMSAAAIYT----VRHPEWHLNSDYS--YGFAYILAWVAFPLALLSGVI 152

Query: 233 FI 234
           ++
Sbjct: 153 YV 154


>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
          Length = 160

 Score = 35.4 bits (80), Expect = 0.048
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 173 TGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASAL 232
           TGI  +LAGLC + + + Y     + H +  L  + S  +G+++ LA V+ PL  ++  +
Sbjct: 99  TGIFQILAGLCVMSAAAIYT----VRHPEWHLNSDYS--YGFAYILAWVAFPLALLSGVI 152

Query: 233 FI 234
           ++
Sbjct: 153 YV 154


>gi|183979973 claudin 19 isoform a [Homo sapiens]
          Length = 224

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 171 IATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMAS 230
           IA G L +LAGLCTL +VS Y   +         P N   EFG +  +   SA L  +  
Sbjct: 120 IAGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGG 179

Query: 231 A 231
           +
Sbjct: 180 S 180


>gi|183979975 claudin 19 isoform b [Homo sapiens]
          Length = 211

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 171 IATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMAS 230
           IA G L +LAGLCTL +VS Y   +         P N   EFG +  +   SA L  +  
Sbjct: 120 IAGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGG 179

Query: 231 A 231
           +
Sbjct: 180 S 180


>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
          Length = 167

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 171 IATGILHLLAGLCTLGSVSCYVAGIELLHQKLE--LPDNVSGEFGWSFCLACVSAPLQFM 228
           + T I+ L++ LC + + S Y    E +H K     P    G +G+S+ LA V+    F+
Sbjct: 96  VLTSIIQLMSCLCVMIAASIYTDRREDIHDKNAKFYPVTREGSYGYSYILAWVAFACTFI 155

Query: 229 ASALFI 234
           +  +++
Sbjct: 156 SGMMYL 161


>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
           isoform b [Homo sapiens]
          Length = 296

 Score = 32.3 bits (72), Expect = 0.41
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 144 PFVSLGLMCFGALIGLCACIC--RSLYPTIATGILHLLAGLCTLGSVSCYVAGI--ELLH 199
           P VSL  M  G ++     I   R++   ++ GI  +L+GL  +  +  Y++ I  E+L+
Sbjct: 104 PLVSLFFMFIGFILNNIGHIRPHRTILAFVS-GIFFILSGLSLVVGLVLYISSINDEMLN 162

Query: 200 QKLELPDNVSGEFGWSFCLACVS 222
           +  +     + ++GWSF  A +S
Sbjct: 163 RTKDAETYFNYKYGWSFAFAAIS 185


>gi|9966781 claudin 2 [Homo sapiens]
          Length = 230

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 150 LMCFGALIGL-CACICRSLYP----TIATGILHLLAGLCTLGSVSCYVAGIELLHQKLEL 204
           L C  +++G+ C   C+         +A G+  +L GL     V+  + GI        +
Sbjct: 93  LACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLV 152

Query: 205 PDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYR 251
           PD++  E G +  L  +S+    +A  +  ++  + R       AY+
Sbjct: 153 PDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQ 199


>gi|52546691 olfactory receptor, family 11, subfamily H, member 1
           [Homo sapiens]
          Length = 326

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 148 LGLMCFGALIGLCACICRSLYPTIATGILHL-LAGLCTLGSVSCYVAGIELLHQKL---- 202
           L +M F   + +C  +   LYP I TG L+  L  LC +     ++  I L+ Q      
Sbjct: 130 LTVMAFDQYLAICRPL---LYPNIMTGHLYAKLVILCWVCGFLWFLIPIVLISQMPFCGP 186

Query: 203 ELPDNVSGEFGWSFCLACVSAP 224
            + D+V  + G  F L CVSAP
Sbjct: 187 NIIDHVVCDPGPRFALDCVSAP 208


>gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Homo
           sapiens]
          Length = 222

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 147 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 206
           SLG +  G+L  L +   +  Y      + +  AGLC L SV      ++   + ++  D
Sbjct: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170

Query: 207 NVSGE--FGWSFCLACVSAPLQFM 228
            V  E  + WSF  AC +  L F+
Sbjct: 171 TVWIEYYYSWSFACACAAFILLFL 194


>gi|61656203 olfactory receptor, family 11, subfamily H, member 12
           [Homo sapiens]
          Length = 326

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 20/88 (22%)

Query: 148 LGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAG-------IELLHQ 200
           L +M F   + +C  +   LYP I TG  HL A L  L    C+V G       I L+ Q
Sbjct: 130 LTVMAFDQYLAICRPL---LYPNIMTG--HLCAKLVIL----CWVCGFLWFLIPIVLISQ 180

Query: 201 KL----ELPDNVSGEFGWSFCLACVSAP 224
                  + D+V  + G  F L CVSAP
Sbjct: 181 MPFCGPNIIDHVVCDPGPRFALDCVSAP 208


>gi|7656981 claudin 15 [Homo sapiens]
          Length = 228

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 132 LRTYLWRCQFLLPFVSLGLMCFGALIGLCACIC---------RSLYPTIATGILHLLAGL 182
           L  Y+  C+ L+   ++ L   G L+G+    C         R        G LH+LAG+
Sbjct: 71  LSGYIQACRALM-ITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGI 129

Query: 183 CTLGSVSCYVAGI 195
           C + ++S Y   I
Sbjct: 130 CGMVAISWYAFNI 142


>gi|58331177 ermin, ERM-like protein isoform a [Homo sapiens]
          Length = 297

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 32  WYEYRSPVQ----ENSSDLNKSIWDEFISDEADEKTYND 66
           W  +R P Q     +  D  + +WDE I D+ D+   ND
Sbjct: 172 WLGFRKPSQADMLHSKHDEEQKVWDEEIDDDDDDNCNND 210


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,755,816
Number of Sequences: 37866
Number of extensions: 421188
Number of successful extensions: 1042
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 43
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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