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Search of human proteins with 169168212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo ... 349 5e-97
gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo ... 346 4e-96
gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo ... 346 4e-96
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 311 1e-85
gi|7706501 WW domain binding protein 11 [Homo sapiens] 65 2e-11
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 65 3e-11
gi|160707881 formin 2 [Homo sapiens] 63 9e-11
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 63 1e-10
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 62 2e-10
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 62 2e-10
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 62 3e-10
gi|157168329 formin 1 [Homo sapiens] 61 4e-10
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 61 4e-10
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 61 4e-10
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 59 2e-09
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 56 1e-08
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 56 1e-08
gi|153792074 proline rich 12 [Homo sapiens] 55 2e-08
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 55 2e-08
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 55 2e-08
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 55 2e-08
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 55 2e-08
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 55 2e-08
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 55 3e-08
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 55 3e-08
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 54 5e-08
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 53 1e-07
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 52 2e-07
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 52 2e-07
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 52 2e-07
>gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 349 bits (896), Expect = 5e-97
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP
Sbjct: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT
Sbjct: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
>gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 346 bits (888), Expect = 4e-96
Identities = 154/155 (99%), Positives = 154/155 (99%)
Query: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGP MMPMMGPPPPGMMPGGPAP
Sbjct: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPAMMPMMGPPPPGMMPGGPAP 120
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT
Sbjct: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
>gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 346 bits (888), Expect = 4e-96
Identities = 154/155 (99%), Positives = 154/155 (99%)
Query: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGP MMPMMGPPPPGMMPGGPAP
Sbjct: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPAMMPMMGPPPPGMMPGGPAP 120
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT
Sbjct: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 311 bits (798), Expect = 1e-85
Identities = 139/155 (89%), Positives = 143/155 (92%)
Query: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
MPKFYCDYC+TYLTHDSP VRKTHCSGRKHKENVKDYYQKWM+EQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
KIPP PFSAPPP GAMIPPPPSLPGPP PGMMPAPHM GPPMMPMMGPPPPGMMP GPAP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
GMRP MGGH PMMPG P++RPPA PMMVPTRP T
Sbjct: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMT 155
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 65.1 bits (157), Expect = 2e-11
Identities = 53/140 (37%), Positives = 63/140 (45%), Gaps = 32/140 (22%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPA----------PFSAPPPVGAMIPPPPSLPGPPH 88
QK KE++ S D T+ A Q + PP P PPP+G PP PGPP
Sbjct: 371 QKQHKEESHS--DGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPT 428
Query: 89 ---PGMMPA--PHMRGPPMMPMMGP--------PPPGMMPG---GPAPGMRPLMGGHRPM 132
PG P P +R P M + GP PPPG PG GP PG+ P G P
Sbjct: 429 GLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPP---GPPPR 485
Query: 133 MPGSPVIRPPACPMMVPTRP 152
P P + PPA P + P RP
Sbjct: 486 GP-PPRLPPPAPPGIPPPRP 504
Score = 57.4 bits (137), Expect = 5e-09
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPA-PHMRGPPMMPMMGPPPPGMMPGGPAP 120
PP PPP G PPP LP P PG+ P P M PP++P +GP PPG+ P P P
Sbjct: 475 PPGLPPGPPPRG----PPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLP 529
Score = 46.6 bits (109), Expect = 9e-06
Identities = 36/102 (35%), Positives = 44/102 (43%), Gaps = 31/102 (30%)
Query: 63 PPA--PFSAPP-------PVGAMIPP------PPSLPGPPHPGMMPAPHMRGPPMM---- 103
PP PF PP P+ ++PP PP P P PG+ P P RGPP
Sbjct: 435 PPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPP 494
Query: 104 --PMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPA 143
P + PP PGMM P + P P+ P P + PPA
Sbjct: 495 APPGIPPPRPGMM----RPPLVP------PLGPAPPGLFPPA 526
Score = 34.3 bits (77), Expect = 0.044
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 64 PAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPP-----MMPMMGPP----PPGMM 114
P P P +I P LPG P ++ GPP ++P++G PPG
Sbjct: 140 PLPDMPHAPSNILIQDIP-LPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRK 198
Query: 115 PGGPAPGMRP 124
P GP PG P
Sbjct: 199 PPGPPPGPPP 208
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 64.7 bits (156), Expect = 3e-11
Identities = 43/105 (40%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 62 IPPAPFSAPPPVG---AMIPP-PPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGG 117
+PP AP P G A +PP PP P PP P M P P GPPM P+ PP +P G
Sbjct: 276 VPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVP--TGPPMAPVPPGPPMARVPPG 333
Query: 118 -------PAPGMRPLMGG--HRPMMPGSPVIRPPACPMMVPTRPR 153
P P M PL G P+ PG P+ P P M P PR
Sbjct: 334 PPMARVPPGPPMAPLPPGPPMAPLPPGPPMAPLPPGPPMAPLPPR 378
Score = 56.2 bits (134), Expect = 1e-08
Identities = 38/97 (39%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMR----GPPMMPMMGPPPPGMMPGG 117
+PP P AP P G + P P PGPP + P P M GPPM P+ PP P M P
Sbjct: 303 VPPWPPMAPVPTGPPMAPVP--PGPPMARVPPGPPMARVPPGPPMAPL--PPGPPMAPLP 358
Query: 118 PAPGMRPLMGG--HRPMMPGSPVIRPPACPMMVPTRP 152
P P M PL G P+ P S V P+ + P
Sbjct: 359 PGPPMAPLPPGPPMAPLPPRSHVPHTGLAPVHITWAP 395
Score = 55.8 bits (133), Expect = 1e-08
Identities = 37/104 (35%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPG--------- 112
+P P PV M P PP +P PP P + P P M P M P PPG
Sbjct: 238 VPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPW 297
Query: 113 --MMPGGPAPGMRPLMGG--HRPMMPGSPVIRPPACPMMVPTRP 152
M P P P M P+ G P+ PG P+ R P P M P
Sbjct: 298 PPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPP 341
Score = 47.8 bits (112), Expect = 4e-06
Identities = 41/125 (32%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 40 KWMKEQAQSLIDKTTAA--------FQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGM 91
KW + Q ++ T A F G AP P ++P P P P P M
Sbjct: 193 KWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALCVHLVPQLPRPPVLPVPPM 252
Query: 92 MPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRPLMGGHR--PMMPGSPVIRPPACPMM-- 147
P P M P P + P PP M P P M P+ G R P+ P P+ P P M
Sbjct: 253 PPRPPMVPMPPRPPIAPMPP-MAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAP 311
Query: 148 VPTRP 152
VPT P
Sbjct: 312 VPTGP 316
Score = 43.1 bits (100), Expect = 9e-05
Identities = 26/58 (44%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
++PP P A P P PP P PP P M P P GPPM P+ PP P M P P
Sbjct: 329 RVPPGPPMARVP-----PGPPMAPLPPGPPMAPLP--PGPPMAPL--PPGPPMAPLPP 377
Score = 42.0 bits (97), Expect = 2e-04
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
++PP P AP P P PP P PP P M P P GPPM P+ PP + G AP
Sbjct: 338 RVPPGPPMAPLP-----PGPPMAPLPPGPPMAPLP--PGPPMAPL--PPRSHVPHTGLAP 388
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 63.2 bits (152), Expect = 9e-11
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 959 LPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1018
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1019 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1048
Score = 63.2 bits (152), Expect = 9e-11
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 970 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1029
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1030 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1059
Score = 63.2 bits (152), Expect = 9e-11
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 981 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1040
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1041 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1070
Score = 63.2 bits (152), Expect = 9e-11
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 992 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1051
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1052 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1081
Score = 63.2 bits (152), Expect = 9e-11
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1003 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1062
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1063 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1092
Score = 62.8 bits (151), Expect = 1e-10
Identities = 41/101 (40%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPG------PPHPG--MMPAPHMRG-----PPMMPMMG 107
+P A PPP+ GA IPPPP LPG PP PG + P P + G PP +P G
Sbjct: 937 LPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 996
Query: 108 PPPPGMMPGGPAPGMRPLMGG---HRPMMPGSPVIRPPACP 145
PPP +PG P PL G P +PG+ + PP P
Sbjct: 997 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1037
Score = 62.8 bits (151), Expect = 1e-10
Identities = 39/96 (40%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 62 IPPAP------FSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPG 112
IPP P PPP+ GA IPPPP LPG P P +P + PP +P +G PPP
Sbjct: 1096 IPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPP 1155
Query: 113 MMPGGPAPGMRPLMGG---HRPMMPGSPVIRPPACP 145
+PG P PL G P +PG + PP P
Sbjct: 1156 PLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLP 1191
Score = 62.4 bits (150), Expect = 2e-10
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1036 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1095
Query: 119 APGMRPLMG---GHRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1096 IPPPPPLPGVGIPPPPPLPGAGIPPPPPLP 1125
Score = 62.0 bits (149), Expect = 2e-10
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1025 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1084
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG + PP P
Sbjct: 1085 IPPPPPLPGAGIPPPPPLPGVGIPPPPPLP 1114
Score = 62.0 bits (149), Expect = 2e-10
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1047 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVG 1106
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 1107 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1136
Score = 60.8 bits (146), Expect = 4e-10
Identities = 38/96 (39%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 62 IPPAP-------FSAPPPVGAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPG 112
IPP P PP GA IPPPP LPG P P +P + PP +P G PPP
Sbjct: 920 IPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPP 979
Query: 113 MMPGGPAPGMRPLMGG---HRPMMPGSPVIRPPACP 145
+PG P PL G P +PG+ + PP P
Sbjct: 980 PLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1015
Score = 60.8 bits (146), Expect = 4e-10
Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1069 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAG 1128
Query: 119 APGMRPLMGGHRPMMPGSPVIRPPACP 145
P PL G P P P + P P
Sbjct: 1129 IPPPPPLPGAGIPPPPPLPRVGIPPPP 1155
Score = 60.5 bits (145), Expect = 6e-10
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1113 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAG 1172
Query: 119 APGMRPLMG---GHRPMMPGSPVIRPPACP 145
P PL G P +PG + PP P
Sbjct: 1173 IPPPPPLPGVGIPPPPPLPGVGIPPPPPLP 1202
Score = 60.1 bits (144), Expect = 8e-10
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 62 IPPAPFSAPPPV-GAMIPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGG- 117
+P A PPP+ GA IPPPP LPG P P +P + PP +P G PPP +PG
Sbjct: 1080 LPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG 1139
Query: 118 -PAPGMRPLMG-GHRPMMPGSPVIRPPACP 145
P P P +G P +PG+ + PP P
Sbjct: 1140 IPPPPPLPRVGIPPPPPLPGAGIPPPPPLP 1169
Score = 58.5 bits (140), Expect = 2e-09
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 62 IPPAPFSAPPPVGAM-IPPPPSLPGP--PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
+P A PPP+ + IPPPP LPG P P +P + PP +P +G PPP +PG
Sbjct: 1135 LPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVG 1194
Query: 119 APGMRPLMGG---HRPMMPGSPVIRPPACPMMVP 149
P PL G P +PG + PA P+ P
Sbjct: 1195 IPPPPPLPGAGIPPPPPLPGMGIPPAPAPPLPPP 1228
Score = 56.6 bits (135), Expect = 8e-09
Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPG 121
+PP P PP GA IPPPP LPG G++P P + G G PPP +PG P
Sbjct: 908 LPPPP---PPLPGAGIPPPPPLPGA---GILPLPPLPGA------GIPPPPPLPGAAIPP 955
Query: 122 MRPLMGGHRPM---MPGSPVIRPPACP 145
PL G P+ +PG+ + PP P
Sbjct: 956 PPPLPGAGIPLPPPLPGAGIPPPPPLP 982
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/101 (38%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 62 IPPAP------FSAPPPV-GAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMM 114
IPP P PPP+ G IPPPP LPG P P P M G P P PPPG
Sbjct: 1173 IPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGM-GIPPAPAPPLPPPG-- 1229
Query: 115 PGGPAPGMRPLMGGHRPMMP---GSPVIRPPACPMMVPTRP 152
G P P + P+ G P++P S + P C + P P
Sbjct: 1230 TGIPPPPLLPVSG--PPLLPQVGSSTLPTPQVCGFLPPPLP 1268
Score = 51.6 bits (122), Expect = 3e-07
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 63 PPAPF----SAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMM-PMMGPPPPGMMPGG 117
PP P S+ P +G + PPPP LPG P + + PP+ M PPPP +PG
Sbjct: 859 PPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGA 918
Query: 118 PAPGMRPLMGG---HRPMMPGSPVIRPPACP 145
P PL G P +PG+ + PP P
Sbjct: 919 GIPPPPPLPGAGILPLPPLPGAGIPPPPPLP 949
Score = 35.0 bits (79), Expect = 0.026
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 82 SLPGPPHPGMMPAPHMRGPPMMPMMG--PPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVI 139
++P PP P P MP +G PPPP +PG P + P + G+ ++
Sbjct: 854 NIPSPP-----PLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEML 908
Query: 140 RPPACPM 146
PP P+
Sbjct: 909 PPPPPPL 915
Score = 33.9 bits (76), Expect = 0.058
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 62 IPPAPFSA--PPPVGAMIPPPPSLP--GPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGG 117
IPPAP PP G IPPPP LP GPP ++P P + G PP + G
Sbjct: 1217 IPPAPAPPLPPPGTG--IPPPPLLPVSGPP---LLPQVGSSTLPTPQVCGFLPPPLPSGL 1271
Query: 118 PAPGMRPLMGGHR-PMMPGSPV 138
GM G + P+ P P+
Sbjct: 1272 FGLGMNQDKGSRKQPIEPCRPM 1293
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 62.8 bits (151), Expect = 1e-10
Identities = 48/106 (45%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMM-PAPHM 97
Q+ M Q + + AA I AP PP G PPPP G P PGMM P P M
Sbjct: 139 QQVMTPQGRGTVAAAAAA-ATASIAGAPTQYPPGRGG--PPPPMGRGAPPPGMMGPPPGM 195
Query: 98 RGPPMMPMMG-PPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPP 142
R PPM P MG PP G G P PGMRP G R P P +RPP
Sbjct: 196 R-PPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG--PPPPGMRPP 238
Score = 50.4 bits (119), Expect = 6e-07
Identities = 34/69 (49%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 60 GKIPPAPFSAPPPVGAMIPPPPSLP--GPPH--------PGMMPAPHMRGPPMMPMMGPP 109
G PP APPP G M PPP P GPP P MP P MR PP M GPP
Sbjct: 174 GPPPPMGRGAPPP-GMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP-GMRGPP 231
Query: 110 PPGMMPGGP 118
PPGM P P
Sbjct: 232 PPGMRPPRP 240
Score = 46.6 bits (109), Expect = 9e-06
Identities = 40/116 (34%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPA----------------PHMRGPPMMPM 105
+P AP PV + P + P G + A P RG P PM
Sbjct: 120 MPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPM 179
Query: 106 -MGPPPPGMMPGGPAPGMRPLMGGHRPMMPG--------SPVIRPPACPMMVPTRP 152
G PPPGMM GP PGMRP MG + PG P +RPP M P P
Sbjct: 180 GRGAPPPGMM--GPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 62.4 bits (150), Expect = 2e-10
Identities = 41/100 (41%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 61 KIPPAPFS----APPPVGAMIPPPP--SLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMM 114
K PP P PP+ +PPPP LP PP P PAP GPP P + PP PG+
Sbjct: 231 KRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAP--SGPPGPPQLPPPAPGVH 288
Query: 115 PGGPAPGMRPLMGGHRPMMPG----SPVIRPPACPMMVPT 150
P PAP + P G P PG +P + PPA + PT
Sbjct: 289 P--PAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPT 326
Score = 60.1 bits (144), Expect = 8e-10
Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMP-APHMRGP-----PMMPMMGPPPPGMMP 115
+PP P + P P G P PP LP PP PG+ P AP + P P P + PP PG+ P
Sbjct: 261 LPPMPPTGPAPSGP--PGPPQLP-PPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHP 317
Query: 116 GGPAPGMRPLMGGHRPMMPG----SPVIRPPACPMMVPTRP 152
PAPG+ P G P PG +P + PPA P + P P
Sbjct: 318 --PAPGVHPPTSGVHPPAPGVHPPAPGVHPPA-PGVHPPAP 355
Score = 58.2 bits (139), Expect = 3e-09
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 37 YYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPP-PVGAMIPPPPSL----PGPPHPGM 91
++ W +E Q + F+ K PPAP S P P G PPPP + P PP P
Sbjct: 195 FWTHWNRETKQFFLQ---FHFKMEK-PPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPES 250
Query: 92 MPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVP 149
+P P G P+ PM PP G P GP PG L + P +PV+ PPA + P
Sbjct: 251 LPPPPPGGLPLPPM---PPTGPAPSGP-PGPPQLPPPAPGVHPPAPVVHPPASGVHPP 304
Score = 56.2 bits (134), Expect = 1e-08
Identities = 42/108 (38%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 60 GKIPPAPFSAPPPVGAMIPPP---PSLPG--PPHPGMMPAP----HMRGP---PMMPMMG 107
G PPAP PP G P P P PG PP PG+ P P H + P P P +
Sbjct: 328 GVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVH 387
Query: 108 PPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRP---PACPMMVPTRP 152
P PG+ P PAPGM P G P PG P P P + P+ P
Sbjct: 388 PQAPGVHP--PAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNP 433
Score = 55.8 bits (133), Expect = 1e-08
Identities = 39/98 (39%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 60 GKIPPAPFSAPPPVGAMIPPP---PSLPG--PPHPGMMPAPHMRGPPMMPMMGPPPPGMM 114
G PPAP PP G P P P PG PP PG+ P PP P + PP PG+
Sbjct: 286 GVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPP-APGVHPPAPGVH 344
Query: 115 PGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
P PAPG+ P G P PG + PP + P P
Sbjct: 345 P--PAPGVHPPAPGVHPPAPG---VHPPPSAGVHPQAP 377
Score = 53.5 bits (127), Expect = 7e-08
Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 60 GKIPPAPFSAPPPVGAMIPPPPSL-PGPP--HPGMMPAPHMRGP---PMMPMMGPPPPGM 113
G PPAP PPP + P P + P P HP P H P P P + P PPG+
Sbjct: 356 GVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHP-QAPGVHPPAPGMHPQAPGVHPQPPGV 414
Query: 114 MPGGPA-----PGMRPLMGGHRPMMPGSPVIRPP 142
P P PG+ P G P P P++RPP
Sbjct: 415 HPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPP 448
Score = 50.8 bits (120), Expect = 5e-07
Identities = 38/98 (38%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 60 GKIPPAPFSAPPPVGAMIPPP---PSLPG--PPHPGMMPAPHMRGPPMMPMMGPPPPGMM 114
G PPAP PP G P P P PG PP PG+ P PP + PP G+
Sbjct: 314 GVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVH 373
Query: 115 PGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
P APG+ P P PG + PPA P M P P
Sbjct: 374 P--QAPGVHPAAPAVHPQAPG---VHPPA-PGMHPQAP 405
Score = 41.2 bits (95), Expect = 4e-04
Identities = 29/68 (42%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 60 GKIPPAPFSAPPPVGAMIPPP---PSLPG--PPHPGMMPA-PHMRGP-PMMPMMGPPPPG 112
G PPAP P G PP PS PG P PG+ P+ P + P PM PM+ PP P
Sbjct: 392 GVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPS 451
Query: 113 MMPGGPAP 120
PG P
Sbjct: 452 EGPGNIPP 459
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 62.0 bits (149), Expect = 2e-10
Identities = 41/104 (39%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 60 GKIPPAPFSAPPPVGAMIPP-PPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP 118
G PP P PP + PP PP PGPP PG + P + GPP PPPP + PG P
Sbjct: 225 GPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDR-PPPPVLFPGQP 283
Query: 119 --APGMRPLMGGHRPMMPG--------SPVIRPPACPMMVPTRP 152
P + PL G P +PG P PP P P RP
Sbjct: 284 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRP 327
Score = 54.7 bits (130), Expect = 3e-08
Identities = 40/108 (37%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 60 GKIPPAPFSAPPPVGAMIPPP--------------PSLPGPPH--PGMMPAPHMRGPPMM 103
G++ P P + PP G PPP P PGPP PG P P GPP
Sbjct: 256 GQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPP---GPP-P 311
Query: 104 PMMGPPPP--GMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVP 149
P GPPPP P P P PL P +PG P PP P + P
Sbjct: 312 PQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNP 359
Score = 49.7 bits (117), Expect = 1e-06
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPG-----PPHPGMMPAPHMRGPPMMPMM-GPPPPGMMPG 116
PP P PPP G ++PPP + P PP P + P PP+ P+ GPPPP
Sbjct: 246 PPGP-PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVP-GY 303
Query: 117 GPAPGMRPLMGGHRPMMPGSPVIRPP 142
GP PG P G P PG RPP
Sbjct: 304 GPPPGPPPPQQG-PPPPPGPFPPRPP 328
Score = 49.3 bits (116), Expect = 1e-06
Identities = 40/103 (38%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 55 AAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMM 114
AAF QG F P G P P PG P P P P + PP P +GPP P
Sbjct: 195 AAFPQGGRGRGRFPGAVPGGDRFPGPAG-PGGPPP---PFPAGQTPP-RPPLGPPGPPGP 249
Query: 115 PGGPAPGM---RPLMG----GHRP----MMPGSPVIRPPACPM 146
PG P PG PL G G RP + PG P +PP P+
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPL 292
Score = 44.7 bits (104), Expect = 3e-05
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 23/77 (29%)
Query: 58 QQGKIPPAPFSAPPPVGAMIPP-----PPSLPGPPHPGMMPAPHM--------------- 97
QQG PP P P G + PP PP LPGPP PAPH+
Sbjct: 313 QQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPT 372
Query: 98 ---RGPPMMPMMGPPPP 111
RGPP G PPP
Sbjct: 373 SDSRGPPPTDPYGRPPP 389
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 61.6 bits (148), Expect = 3e-10
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 31 KENVKDYYQKWMKEQAQSLIDKTTAA---FQQGKIPPAPFSAPPPVGAMIPPPPSLPGPP 87
++ ++ +K ++ + D +AA FQ + P PP +PP P PG P
Sbjct: 98 EQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 88 HPGMMPAPHMRGPPMMPMMGPPPPGM---MPGGPAPGMRPLMGGHRPMMPGSPVIRPPAC 144
PG+ PP+MP + P PGM MPG P PGM P MGG P PG P + P
Sbjct: 158 -PGI--------PPLMPGVPPLMPGMPPVMPGMP-PGMMP-MGGMMPPGPGIPPLMPGMP 206
Query: 145 PMMVPTRPR 153
P M P PR
Sbjct: 207 PGMPPPVPR 215
Score = 60.8 bits (146), Expect = 4e-10
Identities = 52/149 (34%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 21 RKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPP-----------APFSA 69
+KT S +K +++ D Y A + QQG IPP AP
Sbjct: 99 QKTQESQKKKQQDDSDEYDD-DDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 70 P--PPVGAMIPP-----PPSLPGPPHPGMMPAPHMR--GPPMMPMMGPPPPGMMPGGPAP 120
P PP+ +PP PP +PG P PGMMP M GP + P+M PPGM P P P
Sbjct: 158 PGIPPLMPGVPPLMPGMPPVMPGMP-PGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRP 216
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVP 149
G+ P+ PG + RPPA VP
Sbjct: 217 GIPPMTQAQAVSAPGI-LNRPPAPTATVP 244
Score = 45.4 bits (106), Expect = 2e-05
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 34/86 (39%)
Query: 65 APFSAPP--PVGAMIPPPPSLPG--------PPH--------------PGMMPAPHMRGP 100
AP PP P+G M+PP P +P PPH PG MP P+ +GP
Sbjct: 392 APIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMP-PYGQGP 450
Query: 101 PMMP--MMGPPPPGMMPGGPAPGMRP 124
PM+P GPP P M GMRP
Sbjct: 451 PMVPPYQGGPPRPPM-------GMRP 469
Score = 35.8 bits (81), Expect = 0.015
Identities = 31/73 (42%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 87 PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP-APGMRPLM------GGHRPMMPG-SPV 138
P PG P + PP+ P+ G PP PG P GMRP M GGH MPG P
Sbjct: 387 PRPGQAP---IGNPPVGPIGGMMPP--QPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPG 441
Query: 139 IRPP--ACPMMVP 149
PP P MVP
Sbjct: 442 AMPPYGQGPPMVP 454
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 103 MPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACP 145
+P G P G P GP GM P +P +P +RPP P
Sbjct: 386 LPRPGQAPIGNPPVGPIGGMMP----PQPGIPQQQGMRPPMPP 424
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 60.8 bits (146), Expect = 4e-10
Identities = 36/84 (42%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPGM 122
PP P PPP A PPPP P PP P P+ GPP PPPPG+ P P PG+
Sbjct: 684 PPPPPPLPPPSSAGPPPPP--PPPPLPNSPAPPNPGGPPP----APPPPGLAP-PPPPGL 736
Query: 123 RPLMGGHRPMMPGSPVIRPPACPM 146
+G P P I P+CPM
Sbjct: 737 FFGLGSSSSQCPRKPAIE-PSCPM 759
Score = 58.9 bits (141), Expect = 2e-09
Identities = 40/106 (37%), Positives = 48/106 (45%), Gaps = 24/106 (22%)
Query: 55 AAFQQGKIPPAPFSAPPP------VGAMIPPPPS---------LPGPPHPGMMPAPHMRG 99
A+ QQ +PP P S PPP +G++ P PP P PP P +P P G
Sbjct: 638 ASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAG 697
Query: 100 PPMMPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACP 145
PP PPPP +P PAP P GG P P P + PP P
Sbjct: 698 PP-----PPPPPPPLPNSPAP---PNPGG-PPPAPPPPGLAPPPPP 734
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 60.8 bits (146), Expect = 4e-10
Identities = 41/97 (42%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 64 PAPFSAPPPVGAMIPPPPSLPG----PPHPGMMPAPHMRGPPMMPMMG----PPPPGMMP 115
P+P S P G IPPPP LPG PP P +P PP P+ G PPPP +P
Sbjct: 655 PSPSSLPG--GTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLP 712
Query: 116 GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
GG PG+ P P PG P I PP M +P P
Sbjct: 713 GG--PGIPP-----PPPFPGGPGIPPPPPGMGMPPPP 742
Score = 50.8 bits (120), Expect = 5e-07
Identities = 37/92 (40%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
+IPP P P P A IPPPP P P GM P P PP+ G PPP PGGP
Sbjct: 677 RIPPPP--PPLPGSAGIPPPPP-PLPGEAGMPPPP----PPLPGGPGIPPPPPFPGGP-- 727
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
G P PG + PP VP P
Sbjct: 728 -------GIPPPPPGMGMPPPPPFGFGVPAAP 752
Score = 49.3 bits (116), Expect = 1e-06
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 30/137 (21%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPP-----SLPGPPHPGMMP 93
+K M + + I + + +PPAP P G +IPPPP + P PP P P
Sbjct: 550 KKEMASLSAAAITVPPSVPSRAPVPPAP-PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPP 608
Query: 94 APHMRG------PPMM----------PMMG----PPPPGMMPGGPAPGMRPLMGGHR--- 130
P + G PP + P+ G PPPP + G P L GG
Sbjct: 609 PPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPP 668
Query: 131 -PMMPGSPVIRPPACPM 146
P +PGS I PP P+
Sbjct: 669 PPPLPGSARIPPPPPPL 685
Score = 45.8 bits (107), Expect = 1e-05
Identities = 34/76 (44%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPG 121
IPP P P G PPPP LPG PG+ P P G P +P PPPPGM G P P
Sbjct: 691 IPPPPPPLPGEAGMPPPPPP-LPG--GPGIPPPPPFPGGPGIP---PPPPGM--GMPPP- 741
Query: 122 MRPLMGGHRPMMPGSP 137
P G P P P
Sbjct: 742 --PPFGFGVPAAPVLP 755
Score = 45.4 bits (106), Expect = 2e-05
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 31 KENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPP--PVGAMIPPPPSLPG--- 85
K++++ + E A+ + A + + A + PP P A +PP P LPG
Sbjct: 525 KQDLEAEVSQLTGEVAKLTKELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSG 584
Query: 86 -----PPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIR 140
PP PG P PP PPPP +PGG + P +PG I
Sbjct: 585 TIIPPPPAPGDSTTPPPPPPP------PPPPPPLPGG-------VCISSPPSLPGGTAIS 631
Query: 141 PP 142
PP
Sbjct: 632 PP 633
Score = 40.4 bits (93), Expect = 6e-04
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 58 QQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGG 117
+ G PP P P P G IPPPP PG P +P P PP M M PPPP G
Sbjct: 701 EAGMPPPPP---PLPGGPGIPPPPPFPGGPG---IPPP----PPGMGM--PPPPPFGFGV 748
Query: 118 PAPGMRP 124
PA + P
Sbjct: 749 PAAPVLP 755
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 60.8 bits (146), Expect = 4e-10
Identities = 41/97 (42%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 64 PAPFSAPPPVGAMIPPPPSLPG----PPHPGMMPAPHMRGPPMMPMMG----PPPPGMMP 115
P+P S P G IPPPP LPG PP P +P PP P+ G PPPP +P
Sbjct: 664 PSPSSLPG--GTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLP 721
Query: 116 GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
GG PG+ P P PG P I PP M +P P
Sbjct: 722 GG--PGIPP-----PPPFPGGPGIPPPPPGMGMPPPP 751
Score = 50.8 bits (120), Expect = 5e-07
Identities = 37/92 (40%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
+IPP P P P A IPPPP P P GM P P PP+ G PPP PGGP
Sbjct: 686 RIPPPP--PPLPGSAGIPPPPP-PLPGEAGMPPPP----PPLPGGPGIPPPPPFPGGP-- 736
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
G P PG + PP VP P
Sbjct: 737 -------GIPPPPPGMGMPPPPPFGFGVPAAP 761
Score = 49.3 bits (116), Expect = 1e-06
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 30/137 (21%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPP-----SLPGPPHPGMMP 93
+K M + + I + + +PPAP P G +IPPPP + P PP P P
Sbjct: 559 KKEMASLSAAAITVPPSVPSRAPVPPAP-PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPP 617
Query: 94 APHMRG------PPMM----------PMMG----PPPPGMMPGGPAPGMRPLMGGHR--- 130
P + G PP + P+ G PPPP + G P L GG
Sbjct: 618 PPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPP 677
Query: 131 -PMMPGSPVIRPPACPM 146
P +PGS I PP P+
Sbjct: 678 PPPLPGSARIPPPPPPL 694
Score = 45.8 bits (107), Expect = 1e-05
Identities = 34/76 (44%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPG 121
IPP P P G PPPP LPG PG+ P P G P +P PPPPGM G P P
Sbjct: 700 IPPPPPPLPGEAGMPPPPPP-LPG--GPGIPPPPPFPGGPGIP---PPPPGM--GMPPP- 750
Query: 122 MRPLMGGHRPMMPGSP 137
P G P P P
Sbjct: 751 --PPFGFGVPAAPVLP 764
Score = 45.4 bits (106), Expect = 2e-05
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 31 KENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPP--PVGAMIPPPPSLPG--- 85
K++++ + E A+ + A + + A + PP P A +PP P LPG
Sbjct: 534 KQDLEAEVSQLTGEVAKLTKELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSG 593
Query: 86 -----PPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIR 140
PP PG P PP PPPP +PGG + P +PG I
Sbjct: 594 TIIPPPPAPGDSTTPPPPPPP------PPPPPPLPGG-------VCISSPPSLPGGTAIS 640
Query: 141 PP 142
PP
Sbjct: 641 PP 642
Score = 40.4 bits (93), Expect = 6e-04
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 58 QQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGG 117
+ G PP P P P G IPPPP PG P +P P PP M M PPPP G
Sbjct: 710 EAGMPPPPP---PLPGGPGIPPPPPFPGGPG---IPPP----PPGMGM--PPPPPFGFGV 757
Query: 118 PAPGMRP 124
PA + P
Sbjct: 758 PAAPVLP 764
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 58.5 bits (140), Expect = 2e-09
Identities = 43/97 (44%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMM-PAPHM 97
Q+ M Q + + AA I AP PP G PPPP G P PGMM P P M
Sbjct: 139 QQVMTPQGRGTVAAAAAA-ATASIAGAPTQYPPGRGG--PPPPMGRGAPPPGMMGPPPGM 195
Query: 98 RGPPMMPMMG-PPPPGMMPGGPAPGMRPLMGGHRPMM 133
R PPM P MG PP G G P PGMRP G R ++
Sbjct: 196 R-PPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231
Score = 46.2 bits (108), Expect = 1e-05
Identities = 40/110 (36%), Positives = 47/110 (42%), Gaps = 23/110 (20%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPA----------------PHMRGPPMMPM 105
+P AP PV + P + P G + A P RG P PM
Sbjct: 120 MPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPM 179
Query: 106 -MGPPPPGMMPGGPAPGMRPLMGGHRPMMP--GSPVIRPPACPMMVPTRP 152
G PPPGMM GP PGMRP MG + P G+P+ PP P M P P
Sbjct: 180 GRGAPPPGMM--GPPPGMRPPMGPPMGIPPGRGTPMGMPP--PGMRPPPP 225
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 55.8 bits (133), Expect = 1e-08
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 28 RKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPP 87
+K E +K+ + + + Q+ + +++ P P +APP G PPPP P PP
Sbjct: 519 QKRDEKIKELEAEIQQLRTQAQVLSSSSGI------PGPPAAPPLPGVGPPPPP--PAPP 570
Query: 88 HPGMMPAPHMRGPPMMPMMG---PPPPGMMPGGPAPGMRPLMGGHRP 131
PG P P PP+ MMG PPPP ++ GGP P P +GG P
Sbjct: 571 LPGGAPLPPPP-PPLPGMMGIPPPPPPPLLFGGPPP--PPPLGGVPP 614
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 55.8 bits (133), Expect = 1e-08
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 28 RKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPP 87
+K E +K+ + + + Q+ + +++ P P +APP G PPPP P PP
Sbjct: 519 QKRDEKIKELEAEIQQLRTQAQVLSSSSGI------PGPPAAPPLPGVGPPPPP--PAPP 570
Query: 88 HPGMMPAPHMRGPPMMPMMG---PPPPGMMPGGPAPGMRPLMGGHRP 131
PG P P PP+ MMG PPPP ++ GGP P P +GG P
Sbjct: 571 LPGGAPLPPPP-PPLPGMMGIPPPPPPPLLFGGPPP--PPPLGGVPP 614
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 55.5 bits (132), Expect = 2e-08
Identities = 36/92 (39%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGM--MPGGPAP 120
PPAP P P PP P+LP PP P + P P PP P+ PPPP M P P P
Sbjct: 1462 PPAPTPQPQPPPPPPPPQPALPSPP-PLVAPTPS--SPPPPPLPPPPPPAMPSPPPPPPP 1518
Query: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
PL P P P P + TRP
Sbjct: 1519 AAAPLAA-----PPEEPAAPSPEDPELPDTRP 1545
Score = 48.1 bits (113), Expect = 3e-06
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 27/135 (20%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPG------------- 85
Q+ + +L D A + P P AP A +P PP LPG
Sbjct: 1395 QESISSAISALDDPPLAGPKDTSTPDGPPLAP---AAAVPGPPPLPGLPSANSNGTPEPP 1451
Query: 86 ----------PPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPG 135
PP P P P PP P + PPP + P +P PL P MP
Sbjct: 1452 LLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPS 1511
Query: 136 SPVIRPP-ACPMMVP 149
P PP A P+ P
Sbjct: 1512 PPPPPPPAAAPLAAP 1526
Score = 43.9 bits (102), Expect = 6e-05
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 64 PAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPP--PPGMMPGGP-AP 120
P P AP P PPPP LP PP P M P P P+ PP P P P P
Sbjct: 1485 PPPLVAPTPSS---PPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELP 1541
Query: 121 GMRPL 125
RPL
Sbjct: 1542 DTRPL 1546
Score = 40.0 bits (92), Expect = 8e-04
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 62 IPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMP 115
+ P P S PPP PPPP++P PP P A + PP P P +P
Sbjct: 1489 VAPTPSSPPPP-PLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELP 1541
Score = 36.2 bits (82), Expect = 0.012
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 19/100 (19%)
Query: 73 VGAMIPPPPSLPGPPHPGMMPAPH-----MRGPPMMPMMGPPPPGMMPG----GPAPG-- 121
+GA + P P P P PH GP + ++ PPPP ++P P+P
Sbjct: 756 LGAFLQKSPPPPPPTAQSTQPTPHGLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPS 815
Query: 122 --------MRPLMGGHRPMMPGSPVIRPPACPMMVPTRPR 153
+ P P P P PP P+ + R
Sbjct: 816 ASKVGVHLLEPATRDGAPQPPPPPPPPPPPMPLQLEAHLR 855
Score = 36.2 bits (82), Expect = 0.012
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 74 GAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPG---GPAPGMRPLMGGHR 130
GA PPPP P PP + H+R + P P P + P P M+ L+G
Sbjct: 831 GAPQPPPPPPPPPPPMPLQLEAHLRSHGLEP--AAPSPRLRPEESLDPPGAMQELLGALE 888
Query: 131 PM--MPGSPVIRPP 142
P+ PG + PP
Sbjct: 889 PLPPAPGDTGVGPP 902
Score = 32.7 bits (73), Expect = 0.13
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMP----------------MM 106
PP P A P G P S GP PG+ P+ PP +P
Sbjct: 981 PPGP-PAYDPYGPYCPGRASGAGPETPGLGLDPNK--PPELPSTVNAEPLGLIQSGPHQA 1037
Query: 107 GPPPPGMMPGGPAPGMRPLMGGHRPM 132
PPPP P PAP P G P+
Sbjct: 1038 APPPPPPPPPPPAPASEPKGGLTSPI 1063
Score = 31.6 bits (70), Expect = 0.29
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 57 FQQGKIPPA--PFSAPPPVGA--MIPPPPSLPGPPHP 89
+Q G PP P S PP V A + P PP+ P PHP
Sbjct: 1299 YQAGLTPPLSPPKSVPPSVPARGLQPQPPATPAVPHP 1335
Score = 29.3 bits (64), Expect = 1.4
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 55 AAFQQGKIPPA------PFSAPPPVGAMIPPP--PSLPGPPHPGMMPAPHMRGPPMMPMM 106
AA+ GK A +S P G + P G + AP G P P
Sbjct: 425 AAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPS 484
Query: 107 GPPPPGM 113
GPPPPG+
Sbjct: 485 GPPPPGL 491
Score = 28.5 bits (62), Expect = 2.4
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 50 IDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGP 100
+ T A G I P A PP PPP P PP P P + P
Sbjct: 1018 LPSTVNAEPLGLIQSGPHQAAPP------PPPPPPPPPAPASEPKGGLTSP 1062
Score = 27.3 bits (59), Expect = 5.4
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 63 PPAPFSA------PPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPP---PPGM 113
PP P P G PPP P PP P P PP P
Sbjct: 1670 PPVPVRRSGQAKNPVSAGGSSAPPPKAPAPP-------PKPETPEKTTSEKPPEQTPETA 1722
Query: 114 MPGGPAP 120
MP PAP
Sbjct: 1723 MPEPPAP 1729
Score = 26.9 bits (58), Expect = 7.0
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 78 PPPPSLPGPPHPGMMPAPHMRGPPMMPMMGP---PPPGMMPGGPAPGMRPLMGGHRP 131
PP P GP G P R P P P P GPA P G +P
Sbjct: 1144 PPNPGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKP 1200
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 55.1 bits (131), Expect = 2e-08
Identities = 43/115 (37%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMR 98
Q+ M Q + + A I AP PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMP-GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
PPM P +G PP P G P PGMRP P IR P P M P RP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRP----------PPPGIRGPPPPGMRPPRP 240
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 55.1 bits (131), Expect = 2e-08
Identities = 43/115 (37%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMR 98
Q+ M Q + + A I AP PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMP-GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
PPM P +G PP P G P PGMRP P IR P P M P RP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRP----------PPPGIRGPPPPGMRPPRP 240
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 55.1 bits (131), Expect = 2e-08
Identities = 43/115 (37%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMR 98
Q+ M Q + + A I AP PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMP-GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
PPM P +G PP P G P PGMRP P IR P P M P RP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRP----------PPPGIRGPPPPGMRPPRP 240
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 55.1 bits (131), Expect = 2e-08
Identities = 43/115 (37%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMR 98
Q+ M Q + + A I AP PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMP-GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
PPM P +G PP P G P PGMRP P IR P P M P RP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRP----------PPPGIRGPPPPGMRPPRP 240
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 55.1 bits (131), Expect = 2e-08
Identities = 43/115 (37%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 39 QKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMR 98
Q+ M Q + + A I AP PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMP-GGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
PPM P +G PP P G P PGMRP P IR P P M P RP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRP----------PPPGIRGPPPPGMRPPRP 240
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 54.7 bits (130), Expect = 3e-08
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 31 KENVKDYYQKWMKEQAQSLIDKTTAA---FQQGKIPPAPFSAPPPVGAMIPPPPSLPGPP 87
++ ++ +K ++ + D +AA FQ + P PP +PP P PG P
Sbjct: 98 EQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 88 HPGMMPAPHMRG-PPMMPMMGPPPPGMMPGGP----------APGMRPLMGGHRPMMPGS 136
PG+ P M G PP+MP M P PGM PG + MGG P PG
Sbjct: 158 -PGIPPL--MPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGI 214
Query: 137 PVIRPPACPMMVPTRPR 153
P + P P M P PR
Sbjct: 215 PPLMPGMPPGMPPPVPR 231
Score = 52.8 bits (125), Expect = 1e-07
Identities = 50/164 (30%), Positives = 63/164 (38%), Gaps = 37/164 (22%)
Query: 21 RKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAM---- 76
+KT S +K +++ D Y A + QQG IPP PPV
Sbjct: 99 QKTQESQKKKQQDDSDEYDD-DDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 77 --IPP-----PPSLPGPPH--PGMMPAPHMR----------------------GPPMMPM 105
IPP PP +PG P PGM P H + GP + P+
Sbjct: 158 PGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPL 217
Query: 106 MGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVP 149
M PPGM P P PG+ P+ PG + RPPA VP
Sbjct: 218 MPGMPPGMPPPVPRPGIPPMTQAQAVSAPGI-LNRPPAPTATVP 260
Score = 45.4 bits (106), Expect = 2e-05
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 34/86 (39%)
Query: 65 APFSAPP--PVGAMIPPPPSLPG--------PPH--------------PGMMPAPHMRGP 100
AP PP P+G M+PP P +P PPH PG MP P+ +GP
Sbjct: 408 APIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMP-PYGQGP 466
Query: 101 PMMP--MMGPPPPGMMPGGPAPGMRP 124
PM+P GPP P M GMRP
Sbjct: 467 PMVPPYQGGPPRPPM-------GMRP 485
Score = 35.8 bits (81), Expect = 0.015
Identities = 31/73 (42%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 87 PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP-APGMRPLM------GGHRPMMPG-SPV 138
P PG P + PP+ P+ G PP PG P GMRP M GGH MPG P
Sbjct: 403 PRPGQAP---IGNPPVGPIGGMMPP--QPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPG 457
Query: 139 IRPP--ACPMMVP 149
PP P MVP
Sbjct: 458 AMPPYGQGPPMVP 470
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 103 MPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACP 145
+P G P G P GP GM P +P +P +RPP P
Sbjct: 402 LPRPGQAPIGNPPVGPIGGMMP----PQPGIPQQQGMRPPMPP 440
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 54.7 bits (130), Expect = 3e-08
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 31 KENVKDYYQKWMKEQAQSLIDKTTAA---FQQGKIPPAPFSAPPPVGAMIPPPPSLPGPP 87
++ ++ +K ++ + D +AA FQ + P PP +PP P PG P
Sbjct: 98 EQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 88 HPGMMPAPHMRG-PPMMPMMGPPPPGMMPGGP----------APGMRPLMGGHRPMMPGS 136
PG+ P M G PP+MP M P PGM PG + MGG P PG
Sbjct: 158 -PGIPPL--MPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGI 214
Query: 137 PVIRPPACPMMVPTRPR 153
P + P P M P PR
Sbjct: 215 PPLMPGMPPGMPPPVPR 231
Score = 52.8 bits (125), Expect = 1e-07
Identities = 50/164 (30%), Positives = 63/164 (38%), Gaps = 37/164 (22%)
Query: 21 RKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQGKIPPAPFSAPPPVGAM---- 76
+KT S +K +++ D Y A + QQG IPP PPV
Sbjct: 99 QKTQESQKKKQQDDSDEYDD-DDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 77 --IPP-----PPSLPGPPH--PGMMPAPHMR----------------------GPPMMPM 105
IPP PP +PG P PGM P H + GP + P+
Sbjct: 158 PGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPL 217
Query: 106 MGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVP 149
M PPGM P P PG+ P+ PG + RPPA VP
Sbjct: 218 MPGMPPGMPPPVPRPGIPPMTQAQAVSAPGI-LNRPPAPTATVP 260
Score = 45.4 bits (106), Expect = 2e-05
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 34/86 (39%)
Query: 65 APFSAPP--PVGAMIPPPPSLPG--------PPH--------------PGMMPAPHMRGP 100
AP PP P+G M+PP P +P PPH PG MP P+ +GP
Sbjct: 377 APIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMP-PYGQGP 435
Query: 101 PMMP--MMGPPPPGMMPGGPAPGMRP 124
PM+P GPP P M GMRP
Sbjct: 436 PMVPPYQGGPPRPPM-------GMRP 454
Score = 35.8 bits (81), Expect = 0.015
Identities = 31/73 (42%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 87 PHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGP-APGMRPLM------GGHRPMMPG-SPV 138
P PG P + PP+ P+ G PP PG P GMRP M GGH MPG P
Sbjct: 372 PRPGQAP---IGNPPVGPIGGMMPP--QPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPG 426
Query: 139 IRPP--ACPMMVP 149
PP P MVP
Sbjct: 427 AMPPYGQGPPMVP 439
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 103 MPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACP 145
+P G P G P GP GM P +P +P +RPP P
Sbjct: 371 LPRPGQAPIGNPPVGPIGGMMP----PQPGIPQQQGMRPPMPP 409
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 53.9 bits (128), Expect = 5e-08
Identities = 34/79 (43%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 58 QQGKIPPAPFS-APPPVGAMIPPPPSLPGPPHP--------GMM--PAPHMRGPPMMPMM 106
+ G +PP P APPP PPPP GPP P G + P P GPPM P
Sbjct: 338 RSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPP 397
Query: 107 GPPPPGMMPG-GPAPGMRP 124
PPPP G GPAP P
Sbjct: 398 PPPPPPPSSGNGPAPPPLP 416
Score = 47.0 bits (110), Expect = 7e-06
Identities = 33/88 (37%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 78 PPPPS-----LPGPPHPG--------MMPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRP 124
PPPPS LP PP G + P P PP GPPPPG GGP P P
Sbjct: 316 PPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGR--GGPPPPPPP 373
Query: 125 LMGGHRPMMPGSPVIRPPACPMMVPTRP 152
G P+ P P P P P P
Sbjct: 374 ATGRSGPLPPPPPGAGGPPMPPPPPPPP 401
Score = 46.2 bits (108), Expect = 1e-05
Identities = 34/84 (40%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 71 PPVGAMIPPPPSLP-GPPHPGMMPAPHMRGPPMMPMMG------PPPPGM----MPGGPA 119
PPV I PPP P GPP PG P PP P G PPPPG MP P
Sbjct: 343 PPVPLGIAPPPPTPRGPPPPGRGGPP----PPPPPATGRSGPLPPPPPGAGGPPMPPPPP 398
Query: 120 PGMRPLMGGHRPMMPGSPVIRPPA 143
P P G+ P P P PA
Sbjct: 399 PPPPPPSSGNGPAPPPLPPALVPA 422
Score = 45.8 bits (107), Expect = 1e-05
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 55 AAFQQGKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMM 114
A + G +PP P A P M PPPP P PP G PAP PP+ P + P G+
Sbjct: 374 ATGRSGPLPPPPPGAGGP--PMPPPPPPPPPPPSSGNGPAP----PPLPPAL-VPAGGLA 426
Query: 115 PGGPAPGM-----RPLMGGHRPMMPGSPVIRPP 142
PGG + + + P P S ++PP
Sbjct: 427 PGGGRGALLDQIRQGIQLNKTPGAPESSALQPP 459
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 52.8 bits (125), Expect = 1e-07
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGP---------PHPGMMPAPHMRGPPMMPMMGPPPPGM 113
P + P + A PPPPS P P P PGM P PP +P G PPG+
Sbjct: 200 PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF--PPPVPPPGALPPGI 257
Query: 114 MPGGPAPGMRPLMGGHRPMMPGSP 137
P P P M P GH P G+P
Sbjct: 258 PPAMPPPPMPPGAAGHGPPSAGTP 281
Score = 51.2 bits (121), Expect = 3e-07
Identities = 40/95 (42%), Positives = 45/95 (47%), Gaps = 20/95 (21%)
Query: 60 GKIPPAPFSAPPPVGAMIPPPPSLP--GPP------HPGMMPAPHMRGPPMMPMMGPPPP 111
G+ PP P PP + PPP +P GPP HPG MP MRGPP P+M PP
Sbjct: 331 GQPPPRP---PPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPP--PLM---PP 382
Query: 112 GMMPGGPAPGMRPLMGGHR-PMMPGSPVIRPPACP 145
G P P P G R P+ P P RPP P
Sbjct: 383 HGYTGPPRP---PPYGYQRGPLPPPRPTPRPPVPP 414
Score = 47.4 bits (111), Expect = 5e-06
Identities = 30/62 (48%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 85 GPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAPGMRPLMGGHRPMMP----GSPVIR 140
GPP G P P R PP MP GPPP GM P GP G MG PM P G P +
Sbjct: 325 GPPGSGGQPPP--RPPPGMPHPGPPPMGMPPRGPPFGSP--MGHPGPMPPHGMRGPPPLM 380
Query: 141 PP 142
PP
Sbjct: 381 PP 382
Score = 47.0 bits (110), Expect = 7e-06
Identities = 38/104 (36%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 60 GKIPPAPFSAP-PPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPG------ 112
G PP F P PP GA+ PP P P P M P GPP G PG
Sbjct: 236 GMPPPGSFPPPVPPPGAL--PPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHP 293
Query: 113 --MMPGG-PAPGMRPL-MGGHRPMMPGSPVIRPPACPMMVPTRP 152
PGG P PGM + + H P G P PP P RP
Sbjct: 294 HPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP 337
Score = 35.0 bits (79), Expect = 0.026
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 60 GKIPPAPFSAPPPV-------GAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPP 110
G +PP PPP+ G PPP P P P P PP P+ GP P
Sbjct: 366 GPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 52.4 bits (124), Expect = 2e-07
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 63 PPAPFSAPPPVGAMIPPPP-------------SLPGPPHPGMMPAP----HMRGPPMMPM 105
PP PPP G M PPP ++P P PG +P P H++ PP MP
Sbjct: 43 PPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMP- 101
Query: 106 MGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPT 150
PP MP P PGM PG P + P P + PT
Sbjct: 102 ---PPMSSMP--PPPGMM--------FPPGMPPVTAPGTPALPPT 133
Score = 45.4 bits (106), Expect = 2e-05
Identities = 33/82 (40%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 60 GKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPA 119
G+ P P P P IPPP GPPH + P PPM M PPPPGMM
Sbjct: 68 GRPPFDPNMPPMPPPGGIPPP---MGPPH---LQRPPFMPPPMSSM--PPPPGMM---FP 116
Query: 120 PGMRPLMGGHRPMMPGSPVIRP 141
PGM P+ PG+P + P
Sbjct: 117 PGMPPVTA------PGTPALPP 132
Score = 44.3 bits (103), Expect = 4e-05
Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 84 PGPPHPGMMPAPHMRGPPMMPMMGPPPP-GMMPGGPAPGMRPLMGGHRPMMPGSPVIRPP 142
P PP P MRGPP P+M PPPP GMM G P P P G P P P + PP
Sbjct: 32 PAPP-----PNAVMRGPP--PLMRPPPPFGMMRGPPPPPRPPF--GRPPFDPNMPPMPPP 82
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 51 DKTTAAFQQGKIPPAPFSAPPPVGAMI-----PPPPSLPGPPHPGMMPAPHMRGPPMMPM 105
D+T ++ P S P P + P P +LP P P +P P P P+
Sbjct: 303 DQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLP-PAVPHSVPQPTTAIPAFPPV 361
Query: 106 MGPPPPGMMPGGPAPGMRPLMGGHRPMMPG-SPVIRPPACPMMVP 149
M PP +PG P P +PG P + PP PM+ P
Sbjct: 362 MVPPFRVPLPGMPIP------------LPGVLPGMAPPIVPMIHP 394
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 58 QQGKIPPAPFSA-PPPVGAMIP---PPPSLPGPP 87
Q+ P P S+ PPP G M P PP + PG P
Sbjct: 95 QRPPFMPPPMSSMPPPPGMMFPPGMPPVTAPGTP 128
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 52.4 bits (124), Expect = 2e-07
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 63 PPAPFSAPPPVGAMIPPPP-------------SLPGPPHPGMMPAP----HMRGPPMMPM 105
PP PPP G M PPP ++P P PG +P P H++ PP MP
Sbjct: 43 PPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMP- 101
Query: 106 MGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPT 150
PP MP P PGM PG P + P P + PT
Sbjct: 102 ---PPMSSMP--PPPGMM--------FPPGMPPVTAPGTPALPPT 133
Score = 45.4 bits (106), Expect = 2e-05
Identities = 33/82 (40%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 60 GKIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPA 119
G+ P P P P IPPP GPPH + P PPM M PPPPGMM
Sbjct: 68 GRPPFDPNMPPMPPPGGIPPP---MGPPH---LQRPPFMPPPMSSM--PPPPGMM---FP 116
Query: 120 PGMRPLMGGHRPMMPGSPVIRP 141
PGM P+ PG+P + P
Sbjct: 117 PGMPPVTA------PGTPALPP 132
Score = 44.3 bits (103), Expect = 4e-05
Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 84 PGPPHPGMMPAPHMRGPPMMPMMGPPPP-GMMPGGPAPGMRPLMGGHRPMMPGSPVIRPP 142
P PP P MRGPP P+M PPPP GMM G P P P G P P P + PP
Sbjct: 32 PAPP-----PNAVMRGPP--PLMRPPPPFGMMRGPPPPPRPPF--GRPPFDPNMPPMPPP 82
Score = 37.0 bits (84), Expect = 0.007
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 18/110 (16%)
Query: 51 DKTTAAFQQGKIPPAPFSAPPPVGAMI-----PPPPSLPGPPHPGMMPAPHMRGPPMMPM 105
D+T ++ P S P P + P P +LP P P +P P P P+
Sbjct: 303 DQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLP-PAVPHSVPQPTTAIPAFPPV 361
Query: 106 MGPPPPGMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
M PP +PG P P +PG +++ +CP + KT
Sbjct: 362 MVPPFRVPLPGMPIP------------LPGVAMMQIVSCPYVKTVATTKT 399
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 58 QQGKIPPAPFSA-PPPVGAMIP---PPPSLPGPP 87
Q+ P P S+ PPP G M P PP + PG P
Sbjct: 95 QRPPFMPPPMSSMPPPPGMMFPPGMPPVTAPGTP 128
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 52.0 bits (123), Expect = 2e-07
Identities = 36/91 (39%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 69 APPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMG----PPPPGMMPGG---PAPG 121
APPP PPPS GPP P P PH GPP P G PPPP P P P
Sbjct: 276 APPP------PPPSRGGPPPP--PPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPP 327
Query: 122 MRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
RP + P PPA P P+ P
Sbjct: 328 SRPSVAVPPPPPNRMYPPPPPALPSSAPSGP 358
Score = 48.1 bits (113), Expect = 3e-06
Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 63 PPAPFSAPPPV-----GAMIPPP---PSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGM- 113
PP S PPP GA PPP P+ PP P P+ + PP M PPPP +
Sbjct: 292 PPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALP 351
Query: 114 --MPGGPAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
P GP P ++G P P PP P P P
Sbjct: 352 SSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLP 392
Score = 45.8 bits (107), Expect = 1e-05
Identities = 33/95 (34%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGPPHP-----GMMPAPHMRGPPMMPMMGPPPPGMMPGG 117
PP+ PPP PPPP GPP P G P P R P P PPPP P
Sbjct: 281 PPSRGGPPPP-----PPPPHNSGPPPPPARGRGAPPPPPSRAPTAAP---PPPPPSRPSV 332
Query: 118 PAPGMRPLMGGHRPMMPGSPVIRPPACPMMVPTRP 152
P P M P P P + P P P
Sbjct: 333 AVPPPPP-----NRMYPPPPPALPSSAPSGPPPPP 362
Score = 45.8 bits (107), Expect = 1e-05
Identities = 36/96 (37%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 59 QGKIPPAPFSAPPPVGAMIPPPPSLPG----PPHPGMMPAPHMRGPPMMPMMGPPPP--- 111
+G PP P AP A PPPPS P PP P M P P GPPPP
Sbjct: 307 RGAPPPPPSRAP--TAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPS 364
Query: 112 --GMMPGGPAPGMRPLMGGHRPMMPGSPVIRPPACP 145
G+ P P P P P PG P PP P
Sbjct: 365 VLGVGPVAPPPPPPP------PPPPGPP--PPPGLP 392
Score = 45.4 bits (106), Expect = 2e-05
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 61 KIPPAPFSAPPPVG---AMIPPPPSLPGPPHPGMMPAPHMRGPPMMP--MMG-------- 107
+ P A PPP A+ PPPP+ PP P +P+ GPP P ++G
Sbjct: 316 RAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPP 375
Query: 108 PPPPGMMPGGPAPGMRPLMGGHR 130
PPPP PG P P P G H+
Sbjct: 376 PPPPPPPPGPPPPPGLPSDGDHQ 398
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 63 PPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRG 99
PP P PPP G PPPP PG P G P G
Sbjct: 373 PPPPPPPPPPPG---PPPP--PGLPSDGDHQVPTTAG 404
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,470,633
Number of Sequences: 37866
Number of extensions: 972052
Number of successful extensions: 25325
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 1310
Number of HSP's that attempted gapping in prelim test: 6810
Number of HSP's gapped (non-prelim): 9338
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.