LOC642127 7644

Name: LOC642127	Sequence: fasta or formatted (197aa)		NCBI GI: 169167767
Description: PREDICTED: similar to TBP-associated factor 11		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt mRNA [197aa] PREDICTED: similar to TBP-associated factor 11
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.7 21 2 C cysteine 1.0 2 1 D aspartate 5.1 10 1 E glutamate 11.2 22 2 F phenylalanine 2.0 4 1 G glycine 6.6 13 1 H histidine 0.5 1 1 I isoleucine 3.0 6 1 K lysine 7.6 15 2 L leucine 7.6 15 2 M methionine 5.1 10 1 N asparagine 3.0 6 1 P proline 6.1 12 2 Q glutamine 4.6 9 1 R arginine 7.1 14 2 S serine 6.6 13 1 T threonine 5.1 10 2 V valine 5.1 10 2 W tryptophan 0.5 1 1 Y tyrosine 1.5 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC642127 1.000 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC100288018 1.000 PREDICTED: hypothetical protein XP_002342536 LOC391764 0.926 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391764 0.926 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391764 0.926 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC285697 0.912 PREDICTED: similar to hCG1807616 LOC285697 0.912 PREDICTED: similar to hCG1807616 LOC285697 0.912 PREDICTED: hypothetical protein LOC285697 LOC391766 0.879 PREDICTED: similar to TBP-associated factor 11 [Homo... LOC391766 0.879 PREDICTED: similar to TBP-associated factor 11 [Homo... LOC391763 0.865 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC646103 0.865 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391746 0.865 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC402207 0.865 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC729706 0.865 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC729724 0.865 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391747 0.865 PREDICTED: similar to TBP-associated factor 11 [Homo... LOC646066 0.865 PREDICTED: similar to TBP-associated factor 11 [Homo... LOC391766 0.863 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC729711 0.863 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391746 0.863 PREDICTED: similar to TBP-associated factor 11 [Homo... LOC646103 0.857 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391767 0.799 PREDICTED: similar to TBP-associated factor 11 [Hom... LOC391767 0.799 PREDICTED: similar to TBP-associated factor 11 [Homo... LOC391767 0.799 PREDICTED: similar to TBP-associated factor 11 [Homo... TAF11 0.530 TBP-associated factor 11 LOC340096 0.019 PREDICTED: similar to hCG1642908 LOC340096 0.019 PREDICTED: similar to hCG1642908 EPS8L1 0.019 epidermal growth factor receptor pathway substrate ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.