Guide to the Human Genome
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Name: LOC391767 Sequence: fasta or formatted (197aa) NCBI GI: 88987389
Description:

PREDICTED: similar to TBP-associated factor 11

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [197aa] PREDICTED: similar to TBP-associated factor 11
alt mRNA [197aa] PREDICTED: similar to TBP-associated factor 11
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         21           2
 C cysteine            2.5          5           1
 D aspartate           4.6          9           1
 E glutamate          11.7         23           2
 F phenylalanine       2.5          5           1
 G glycine             6.1         12           1
 H histidine           0.0          0           0
 I isoleucine          2.5          5           1
 K lysine              6.1         12           2
 L leucine             8.1         16           2
 M methionine          6.6         13           1
 N asparagine          3.0          6           2
 P proline             6.6         13           2
 Q glutamine           4.1          8           1
 R arginine            6.6         13           1
 S serine              5.1         10           1
 T threonine           4.1          8           2
 V valine              7.1         14           2
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TBP-associated factor 11 [Homo... 
LOC391767             1.000   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391767             1.000   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC285697             0.802   PREDICTED: similar to hCG1807616 
LOC285697             0.802   PREDICTED: similar to hCG1807616 
LOC285697             0.802   PREDICTED: hypothetical protein LOC285697 
LOC642127             0.789   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC642127             0.789   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC100288018          0.789   PREDICTED: hypothetical protein XP_002342536 
LOC391766             0.789   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC391766             0.789   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC391764             0.780   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391764             0.780   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391766             0.778   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391764             0.778   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391763             0.764   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC646103             0.764   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391746             0.764   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC402207             0.764   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC729706             0.764   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC729724             0.764   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391747             0.764   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC646066             0.764   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC729711             0.762   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391746             0.762   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC646103             0.753   PREDICTED: similar to TBP-associated factor 11 [Hom...
TAF11                 0.501   TBP-associated factor 11 
FYCO1                 0.030   FYVE and coiled-coil domain containing 1 
LOC340096             0.022   PREDICTED: similar to hCG1642908 
LOC340096             0.022   PREDICTED: similar to hCG1642908 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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