Guide to the Human Genome
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Name: LOC729711 Sequence: fasta or formatted (198aa) NCBI GI: 239742498
Description:

PREDICTED: similar to TBP-associated factor 11

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         22           2
 C cysteine            1.5          3           1
 D aspartate           4.5          9           1
 E glutamate          11.1         22           2
 F phenylalanine       2.0          4           1
 G glycine             7.6         15           1
 H histidine           1.0          2           1
 I isoleucine          2.5          5           1
 K lysine              6.6         13           2
 L leucine             8.1         16           2
 M methionine          5.1         10           1
 N asparagine          2.0          4           1
 P proline             6.1         12           2
 Q glutamine           2.5          5           1
 R arginine            9.1         18           2
 S serine              7.6         15           2
 T threonine           5.1         10           2
 V valine              5.6         11           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TBP-associated factor 11 [Hom... 
LOC391763             0.997   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC646103             0.997   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391746             0.997   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC402207             0.997   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC729706             0.997   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC729724             0.997   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391747             0.997   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC646066             0.997   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC391746             0.995   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC646103             0.986   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391766             0.951   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC391766             0.951   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC391766             0.948   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC285697             0.879   PREDICTED: similar to hCG1807616 
LOC285697             0.879   PREDICTED: similar to hCG1807616 
LOC285697             0.879   PREDICTED: hypothetical protein LOC285697 
LOC642127             0.860   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC642127             0.860   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC100288018          0.860   PREDICTED: hypothetical protein XP_002342536 
LOC391764             0.852   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391764             0.852   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391764             0.849   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391767             0.770   PREDICTED: similar to TBP-associated factor 11 [Hom...
LOC391767             0.770   PREDICTED: similar to TBP-associated factor 11 [Homo...
LOC391767             0.770   PREDICTED: similar to TBP-associated factor 11 [Homo...
TAF11                 0.521   TBP-associated factor 11 
EPS8L1                0.033   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.022   epidermal growth factor receptor pathway substrate ...
MAP7                  0.022   microtubule-associated protein 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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