Guide to the Human Genome
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Name: LOC100128823 Sequence: fasta or formatted (173aa) NCBI GI: 169166858
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {173aa} PREDICTED: hypothetical protein
alt mRNA {173aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         23           2
 C cysteine            3.5          6           2
 D aspartate           2.3          4           1
 E glutamate           5.2          9           2
 F phenylalanine       0.6          1           1
 G glycine            10.4         18           2
 H histidine           2.9          5           1
 I isoleucine          0.6          1           1
 K lysine              4.0          7           2
 L leucine             9.2         16           2
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline             9.8         17           2
 Q glutamine           3.5          6           1
 R arginine            9.2         16           2
 S serine              8.1         14           2
 T threonine           6.4         11           2
 V valine              5.8         10           2
 W tryptophan          0.6          1           1
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128823          1.000   PREDICTED: hypothetical protein 
LOC100128823          1.000   PREDICTED: hypothetical protein 
LOC100128943          0.024   PREDICTED: similar to hCG2038853 
LOC100128943          0.024   PREDICTED: similar to hCG2038853 
LOC100128943          0.024   PREDICTED: similar to hCG2038853 
CTNND2                0.021   catenin (cadherin-associated protein), delta 2 (neur...
ZNF831                0.018   zinc finger protein 831 
GGN                   0.018   gametogenetin 
SHANK1                0.015   SH3 and multiple ankyrin repeat domains 1 
HDGF2                 0.015   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.015   hepatoma-derived growth factor-related protein 2 iso...
MPG                   0.012   N-methylpurine-DNA glycosylase isoform b 
WDR33                 0.012   WD repeat domain 33 isoform 1 
RSAD1                 0.012   radical S-adenosyl methionine domain containing 1 [Ho...
KIAA1539              0.009   hypothetical protein LOC80256 
WDR81                 0.009   PREDICTED: WD repeat domain 81 
LOC100288243          0.009   PREDICTED: hypothetical protein 
LOC100288243          0.009   PREDICTED: hypothetical protein XP_002342233 
PRDM13                0.009   PR domain containing 13 
VSIG2                 0.009   V-set and immunoglobulin domain containing 2 
GLI1                  0.009   GLI family zinc finger 1 isoform 2 
GLI1                  0.009   GLI family zinc finger 1 isoform 1 
LOC100292648          0.009   PREDICTED: similar to hCG2036828 
MPG                   0.009   N-methylpurine-DNA glycosylase isoform c 
MPG                   0.009   N-methylpurine-DNA glycosylase isoform a 
MKRN3                 0.009   makorin ring finger protein 3 
PLEKHG4B              0.009   pleckstrin homology domain containing, family G (wi...
LOC202781             0.006   PREDICTED: hypothetical protein 
LOC100290372          0.006   PREDICTED: hypothetical protein XP_002346788 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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