Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC441016 Sequence: fasta or formatted (273aa) NCBI GI: 169166418
Description:

PREDICTED: similar to COMM domain containing 5

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt mRNA [273aa] PREDICTED: similar to COMM domain containing 5
alt mRNA [273aa] PREDICTED: similar to COMM domain containing 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         21           2
 C cysteine            2.9          8           2
 D aspartate           4.8         13           1
 E glutamate           3.7         10           1
 F phenylalanine       4.4         12           1
 G glycine             8.4         23           2
 H histidine           2.6          7           2
 I isoleucine          2.2          6           1
 K lysine              3.3          9           2
 L leucine            14.7         40           2
 M methionine          2.2          6           1
 N asparagine          1.5          4           1
 P proline             6.6         18           3
 Q glutamine           8.1         22           3
 R arginine            4.0         11           1
 S serine             10.3         28           4
 T threonine           2.6          7           1
 V valine              7.0         19           2
 W tryptophan          2.2          6           2
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to COMM domain containing 5 [Hom... 
LOC441016             1.000   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             1.000   PREDICTED: similar to COMM domain containing 5 [Hom...
COMMD5                0.665   COMM domain containing 5 
COMMD5                0.665   COMM domain containing 5 
COMMD5                0.665   COMM domain containing 5 
COMMD9                0.019   COMM domain containing 9 isoform 1 
COMMD9                0.017   COMM domain containing 9 isoform 2 
TRO                   0.011   trophinin isoform 5 
LOC100291849          0.009   PREDICTED: hypothetical protein XP_002345774 
LOC100291074          0.009   PREDICTED: hypothetical protein XP_002346640 
ZNF628                0.009   zinc finger protein 628 
CCDC116               0.009   coiled-coil domain containing 116 
ZNF202                0.008   zinc finger protein 202 
SLIT3                 0.008   slit homolog 3 
CLCA4                 0.008   chloride channel accessory 4 
IQSEC2                0.008   IQ motif and Sec7 domain 2 isoform1 
COMMD4                0.008   COMM domain containing 4 
OVOL2                 0.008   zinc finger protein 339 
ZNF469                0.006   zinc finger protein 469 
ZNRF3                 0.006   zinc and ring finger 3 
MYO9A                 0.006   myosin IXA 
TCF3                  0.006   transcription factor 3 isoform E47 
TCF3                  0.006   transcription factor 3 isoform E12 
EYS                   0.006   eyes shut homolog isoform 2 
EYS                   0.006   eyes shut homolog isoform 1 
EYS                   0.006   eyes shut homolog isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press