Guide to the Human Genome
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Name: LOC100291074 Sequence: fasta or formatted (118aa) NCBI GI: 239748342
Description:

PREDICTED: hypothetical protein XP_002346640

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         18           3
 C cysteine            4.2          5           1
 D aspartate           0.0          0           0
 E glutamate           4.2          5           1
 F phenylalanine       0.8          1           1
 G glycine            13.6         16           2
 H histidine           1.7          2           1
 I isoleucine          1.7          2           1
 K lysine              0.8          1           1
 L leucine            13.6         16           2
 M methionine          1.7          2           1
 N asparagine          0.8          1           1
 P proline             5.9          7           1
 Q glutamine           6.8          8           2
 R arginine            5.9          7           1
 S serine              8.5         10           2
 T threonine           5.9          7           2
 V valine              4.2          5           1
 W tryptophan          4.2          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346640 
LOC100291849          1.000   PREDICTED: hypothetical protein XP_002345774 
CETP                  0.027   cholesteryl ester transfer protein, plasma precurso...
LOC100290946          0.023   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.023   PREDICTED: hypothetical protein XP_002344246 
LOC441016             0.023   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.023   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.023   PREDICTED: similar to COMM domain containing 5 [Hom...
PRMT7                 0.014   protein arginine methyltransferase 7 
TECPR2                0.014   tectonin beta-propeller repeat containing 2 
NANOS1                0.009   nanos homolog 1 
CRIPAK                0.009   cysteine-rich PAK1 inhibitor 
FAM155B               0.009   transmembrane protein 28 
SERGEF                0.009   deafness locus associated putative guanine nucleotide...
C12orf51              0.005   chromosome 12 open reading frame 51 
C1orf85               0.005   kidney predominant protein NCU-G1 
ZMYND8                0.005   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.005   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.005   zinc finger, MYND-type containing 8 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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