Search of human proteins with 169166344

Search of human proteins with 169166344

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169166344 PREDICTED: hypothetical protein LOC54553 [Homo
sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169167220 PREDICTED: hypothetical protein LOC54553 [Homo sapi...   301   9e-83
gi|169166916 PREDICTED: hypothetical protein LOC54553 [Homo sapi...   301   9e-83
gi|169166344 PREDICTED: hypothetical protein LOC54553 [Homo sapi...   301   9e-83
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             36   0.009
gi|239757265 PREDICTED: similar to hCG1820370 [Homo sapiens]           35   0.016
gi|31542265 tribbles 3 [Homo sapiens]                                  34   0.047
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]            33   0.10 
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]            33   0.10 
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ...    33   0.10 
gi|239747084 PREDICTED: hypothetical protein XP_002343912 [Homo ...    32   0.18 
gi|62122952 DCN1, defective in cullin neddylation 1, domain cont...    32   0.18 
gi|148762978 similar to CG15216-PA [Homo sapiens]                      32   0.18 
gi|239754935 PREDICTED: hypothetical protein [Homo sapiens]            30   0.52 
gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo ...    30   0.52 
gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo ...    30   0.52 
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              30   0.67 
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ...    29   1.1  
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    29   1.1  
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]             29   1.1  
gi|239752834 PREDICTED: hypothetical protein [Homo sapiens]            29   1.5  
gi|239747378 PREDICTED: hypothetical protein XP_002346573 [Homo ...    29   1.5  
gi|169204353 PREDICTED: hypothetical protein [Homo sapiens]            29   1.5  
gi|239741203 PREDICTED: hypothetical protein XP_002342135 [Homo ...    29   1.5  
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo ...    28   2.0  
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    28   2.0  
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    28   2.0  
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    28   2.0  
gi|51317366 myosin XVIIIB [Homo sapiens]                               28   2.0  

>gi|169167220 PREDICTED: hypothetical protein LOC54553 [Homo
           sapiens]
          Length = 142

 Score =  301 bits (772), Expect = 9e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA 60
           MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA
Sbjct: 1   MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA 60

Query: 61  WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD 120
           WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD
Sbjct: 61  WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD 120

Query: 121 LHLLQGESAPPFPWRGVRPSVG 142
           LHLLQGESAPPFPWRGVRPSVG
Sbjct: 121 LHLLQGESAPPFPWRGVRPSVG 142


>gi|169166916 PREDICTED: hypothetical protein LOC54553 [Homo
           sapiens]
          Length = 142

 Score =  301 bits (772), Expect = 9e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA 60
           MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA
Sbjct: 1   MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA 60

Query: 61  WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD 120
           WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD
Sbjct: 61  WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD 120

Query: 121 LHLLQGESAPPFPWRGVRPSVG 142
           LHLLQGESAPPFPWRGVRPSVG
Sbjct: 121 LHLLQGESAPPFPWRGVRPSVG 142


>gi|169166344 PREDICTED: hypothetical protein LOC54553 [Homo
           sapiens]
          Length = 142

 Score =  301 bits (772), Expect = 9e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA 60
           MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA
Sbjct: 1   MTQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAA 60

Query: 61  WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD 120
           WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD
Sbjct: 61  WRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPD 120

Query: 121 LHLLQGESAPPFPWRGVRPSVG 142
           LHLLQGESAPPFPWRGVRPSVG
Sbjct: 121 LHLLQGESAPPFPWRGVRPSVG 142


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 5   RGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAAWRAW 64
           +G G R AGG  +GR  R R RR R         R+GR R  P         PR + R+ 
Sbjct: 373 QGRGGRAAGG--AGRRRRRRRRRRRSRSSASAPRRRGRRRPRP-------APPRGSSRSL 423

Query: 65  SVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSR 110
           S A S     D   GR         GS   H      A  RP ++R
Sbjct: 424 SRARS---SSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRAR 466


>gi|239757265 PREDICTED: similar to hCG1820370 [Homo sapiens]
          Length = 272

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 2   TQGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAAW 61
           TQGR         C S   + +  +RC   G             +P  P     D  A  
Sbjct: 105 TQGRRRKPTADARCGSRSRSGNEVQRC---GEDLGASLGANQPNQPGPPNRSASDINATH 161

Query: 62  R---AWSVAVSFGAGGDCSFGRKEEA-QAASSGSCAHHPKVRH 100
           R    W V V+  A GDCSFG +E   Q AS   CA H    H
Sbjct: 162 RRCVGWVVEVTAEASGDCSFGAREAGKQLASPTRCASHICTAH 204


>gi|31542265 tribbles 3 [Homo sapiens]
          Length = 358

 Score = 33.9 bits (76), Expect = 0.047
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 11 RAGGCASGRGTRSRHRRCRLYGRVRTE---ERKGRSRVEPKLPPDLTP--DPRAAWRAWS 65
          RA   A+  G+ SR +R  L   + TE   +++ RS  +P+LPP L P   P A  RA +
Sbjct: 2  RATPLAAPAGSLSRKKRLELDDNLDTERPVQKRARSGPQPRLPPCLLPLSPPTAPDRATA 61

Query: 66 VAVSFGAG 73
          VA +   G
Sbjct: 62 VATASRLG 69


>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 32.7 bits (73), Expect = 0.10
 Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 25/117 (21%)

Query: 6   GSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEP---KLPPDLTPDPRAAWR 62
           G+G       AS  G  +   R ++ GRV  E    R  + P    LP + TP PR    
Sbjct: 184 GAGGGAETAAASSGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRM 243

Query: 63  AWSV-------------AVSFGA---------GGDCSFGRKEEAQAASSGSCAHHPK 97
           AW V             A S G          G DC F   + A+  SS      P+
Sbjct: 244 AWEVISGSTRDVRRESGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPR 300


>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 32.7 bits (73), Expect = 0.10
 Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 25/117 (21%)

Query: 6   GSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEP---KLPPDLTPDPRAAWR 62
           G+G       AS  G  +   R ++ GRV  E    R  + P    LP + TP PR    
Sbjct: 184 GAGGGAETAAASSGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRM 243

Query: 63  AWSV-------------AVSFGA---------GGDCSFGRKEEAQAASSGSCAHHPK 97
           AW V             A S G          G DC F   + A+  SS      P+
Sbjct: 244 AWEVISGSTRDVRRESGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPR 300


>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
           sapiens]
          Length = 314

 Score = 32.7 bits (73), Expect = 0.10
 Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 25/117 (21%)

Query: 6   GSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEP---KLPPDLTPDPRAAWR 62
           G+G       AS  G  +   R ++ GRV  E    R  + P    LP + TP PR    
Sbjct: 184 GAGGGAETAAASSGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRM 243

Query: 63  AWSV-------------AVSFGA---------GGDCSFGRKEEAQAASSGSCAHHPK 97
           AW V             A S G          G DC F   + A+  SS      P+
Sbjct: 244 AWEVISGSTRDVRRESGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPR 300


>gi|239747084 PREDICTED: hypothetical protein XP_002343912 [Homo
           sapiens]
          Length = 313

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 9   DRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLP---PDLTPDPRAAWRAWS 65
           +RRA GC+  RG + R  R R         R+ R    P  P   P   P P   W  ++
Sbjct: 77  ERRAVGCSGRRGIKRRELRPRRSPAEPGSARRNRPARVPDSPAARPGAAPSPPERWADFA 136

Query: 66  VAVSF 70
           V ++F
Sbjct: 137 VNLNF 141


>gi|62122952 DCN1, defective in cullin neddylation 1, domain
           containing 2 [Homo sapiens]
          Length = 259

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 29  RLYGRVRTEERKGRSRVE--PKLPPDLTPDPRAAWRAWSVAVSFGAGGDCSFGRKEEAQA 86
           RLYGR +  + + +  V+   +   DL+ DP A+     +A  F A   C F RKE    
Sbjct: 67  RLYGRYKDPQDENKIGVDGIQQFCDDLSLDP-ASISVLVIAWKFRAATQCEFSRKEFLDG 125

Query: 87  ASSGSCAHHPKVRHLAP 103
            +   C    K++ L P
Sbjct: 126 MTELGCDSMEKLKALLP 142


>gi|148762978 similar to CG15216-PA [Homo sapiens]
          Length = 976

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 33  RVRTEE----RKGRSRVEPKLPPDLTPDPRAAWRAWSVAVSFGAGGDCSFGRKEEAQAAS 88
           R RT E    R+ RS+  P+ PP LTP P       S  V    G +     + EA    
Sbjct: 79  RARTREAEPRRRARSKSAPRAPPGLTPAPA------SPPVLPRRGREAQRAARAEASPRR 132

Query: 89  SGSCAHHPKVRHLAPN-RPSKSRTDRGVTLQ-PDLHLLQGESAPPFPWRGVRPSV 141
             +   +P +R LA    P K +  RG   +   L    G  APP P  G  P V
Sbjct: 133 EPA---YPALRALANELHPIKLQPQRGGPGRVAPLCAAAGRCAPPEPPAGPAPHV 184


>gi|239754935 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 397

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 40/136 (29%), Positives = 47/136 (34%), Gaps = 44/136 (32%)

Query: 18  GRGTRSRHRRCRLYGRVRTE----ERKGRSRVEPKL-------PPDLTPDP--------R 58
           GRG  +R     L+   R      +R   +R EP+L       PP L P P         
Sbjct: 171 GRGAATRVFLVGLFASPRAAALLGDRSWEARTEPQLLPLPLSPPPPLAPSPIPERSLRSL 230

Query: 59  AAWRAWSVAVSFG----AGGDCSFGRKE-----------EAQAASS----------GSCA 93
           AAW A       G     GG    GRKE           E  AA +          G+ A
Sbjct: 231 AAWEALGKGGRLGRRCRGGGGERAGRKEGCPLWGWGRRGEGAAARAAPPCGQPRELGTLA 290

Query: 94  HHPKVRHLAPNRPSKS 109
             P   HLAP RP  S
Sbjct: 291 ARPACCHLAPLRPCLS 306


>gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo
           sapiens]
          Length = 397

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 40/136 (29%), Positives = 47/136 (34%), Gaps = 44/136 (32%)

Query: 18  GRGTRSRHRRCRLYGRVRTE----ERKGRSRVEPKL-------PPDLTPDP--------R 58
           GRG  +R     L+   R      +R   +R EP+L       PP L P P         
Sbjct: 171 GRGAATRVFLVGLFASPRAAALLGDRSWEARTEPQLLPLPLSPPPPLAPSPIPERSLRSL 230

Query: 59  AAWRAWSVAVSFG----AGGDCSFGRKE-----------EAQAASS----------GSCA 93
           AAW A       G     GG    GRKE           E  AA +          G+ A
Sbjct: 231 AAWEALGKGGRLGRRCRGGGGERAGRKEGCPLWGWGRRGEGAAARAAPPCGQPRELGTLA 290

Query: 94  HHPKVRHLAPNRPSKS 109
             P   HLAP RP  S
Sbjct: 291 ARPACCHLAPLRPCLS 306


>gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo
           sapiens]
          Length = 397

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 40/136 (29%), Positives = 47/136 (34%), Gaps = 44/136 (32%)

Query: 18  GRGTRSRHRRCRLYGRVRTE----ERKGRSRVEPKL-------PPDLTPDP--------R 58
           GRG  +R     L+   R      +R   +R EP+L       PP L P P         
Sbjct: 171 GRGAATRVFLVGLFASPRAAALLGDRSWEARTEPQLLPLPLSPPPPLAPSPIPERSLRSL 230

Query: 59  AAWRAWSVAVSFG----AGGDCSFGRKE-----------EAQAASS----------GSCA 93
           AAW A       G     GG    GRKE           E  AA +          G+ A
Sbjct: 231 AAWEALGKGGRLGRRCRGGGGERAGRKEGCPLWGWGRRGEGAAARAAPPCGQPRELGTLA 290

Query: 94  HHPKVRHLAPNRPSKS 109
             P   HLAP RP  S
Sbjct: 291 ARPACCHLAPLRPCLS 306


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 30.0 bits (66), Expect = 0.67
 Identities = 38/143 (26%), Positives = 51/143 (35%), Gaps = 24/143 (16%)

Query: 3    QGRGSGD-----RRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDP 57
            +GRG G+     R   G   GRG  +R R  R Y   R ++ +G     P  PP   P  
Sbjct: 1024 RGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPP--APRG 1081

Query: 58   RAAWRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTL 117
            R A    S    +         ++   + + +GS  H      LAP+         G   
Sbjct: 1082 RTASETRSEGSEYE-----EIPKRRRQRGSETGSETHE---SDLAPSDKEAPTPKEGTLT 1133

Query: 118  QPDLHLLQGESAPPFPWRGVRPS 140
            Q  L       APP P  G  PS
Sbjct: 1134 QVPL-------APPPP--GAPPS 1147


>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 743

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 3   QGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAAWR 62
           QG GS     GG    RG R  H+   +  R+R    + R+                 WR
Sbjct: 592 QGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRT-----------------WR 634

Query: 63  AWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRP 106
                V+    G  +   + + + A++G   H P V   AP +P
Sbjct: 635 RGGGRVA--QRGQLAHVLRRQVEGAAAGLTPHVPPVLGAAPQQP 676


>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
           sapiens]
          Length = 697

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 3   QGRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPKLPPDLTPDPRAAWR 62
           QG GS     GG    RG R  H+   +  R+R    + R+                 WR
Sbjct: 546 QGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRT-----------------WR 588

Query: 63  AWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRP 106
                V+    G  +   + + + A++G   H P V   AP +P
Sbjct: 589 RGGGRVA--QRGQLAHVLRRQVEGAAAGLTPHVPPVLGAAPQQP 630


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 32   GRVRTEERKGRSRVEPKLPPDLTPDPRAAWRAWSVAVSFGAGGDCSFGRKEEAQAASSGS 91
            G+  T+ R   +R EP  P   +  PR   R    +    +  + S      + ++SS S
Sbjct: 2096 GKCETDRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSS 2155

Query: 92   CAH 94
            C+H
Sbjct: 2156 CSH 2158


>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
          Length = 1496

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 4    GRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEP-KLPPDLTPDPR 58
            GRG    +AGG     GT  R    RL   +        SR+ P +LPPDL P  R
Sbjct: 1038 GRGP---KAGGRQDEAGTPRRGLGARLQQLLTPSRHSPASRIPPPELPPDLPPPAR 1090


>gi|239752834 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 181

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 57  PRAAWRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAP 103
           P A+WR    A SF A         + + AASSGSC    K+RH  P
Sbjct: 53  PAASWR--KAAASFPA---------QRSAAASSGSCCAAAKLRHPDP 88


>gi|239747378 PREDICTED: hypothetical protein XP_002346573 [Homo
           sapiens]
          Length = 181

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 57  PRAAWRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAP 103
           P A+WR    A SF A         + + AASSGSC    K+RH  P
Sbjct: 53  PAASWR--KAAASFPA---------QRSAAASSGSCCAAAKLRHPDP 88


>gi|169204353 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 214

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 55  PDPRAAWRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVR 99
           P    AW  WS AV   A   C  G +  +   + GSC   P +R
Sbjct: 147 PQLHCAWTVWSWAVPSSASRACGDGHR-RSTCQAQGSCTGLPPLR 190


>gi|239741203 PREDICTED: hypothetical protein XP_002342135 [Homo
           sapiens]
          Length = 181

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 57  PRAAWRAWSVAVSFGAGGDCSFGRKEEAQAASSGSCAHHPKVRHLAP 103
           P A+WR    A SF A         + + AASSGSC    K+RH  P
Sbjct: 53  PAASWR--KAAASFPA---------QRSAAASSGSCCAAAKLRHPDP 88


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 4   GRGSGDRRAGGCASGRGTRSRHRRCRLYGRVRTEERKGRSRVEPK-LPPDLTPDPRAAWR 62
           GRG G     G A+G  TR + R   L         +G    EP  L P L+  PRA  R
Sbjct: 93  GRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE---EPSLLRPQLSRRPRALRR 149

Query: 63  AWSVAVSFGAGGD 75
           +  V  + G GGD
Sbjct: 150 STRVPAA-GKGGD 161


>gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo
           sapiens]
          Length = 205

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 34/127 (26%), Positives = 43/127 (33%), Gaps = 18/127 (14%)

Query: 21  TRSRHRRCRLYGRVRTEERKG--------RSRVEPKLPPDLTPDPRAAWRAWSVAVSFGA 72
           ++ R RRCR   R   EERK         R   EP+  P       A        +  G 
Sbjct: 7   SKRRRRRCRRRRRREGEERKTGVPAAAAVRREGEPRAAPGTGRYHEAG------TLESGV 60

Query: 73  GGDCSFGRKEEAQAASSGSCAHHPKVRHLAPNRPSKSRTDRGVTLQPDLHLLQGESAPPF 132
           GG    GR+E +            ++   A  R S     RG+     L LL     PP 
Sbjct: 61  GGRTGTGREEGSVFRKGEGTWRRRRLLAAADPRASPCLPVRGIL---SLTLLPARQLPP- 116

Query: 133 PWRGVRP 139
            WR   P
Sbjct: 117 SWRKTTP 123


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 94   HHPKVRHLAPNRPSKSRTDRGVTLQPDLHLLQGESAPPFPWRGVR 138
            HH    HL P RP+          QP LHL+   S      RG+R
Sbjct: 1551 HHSSYVHLRPARPTSPPAHSHRDFQPVLHLVALNSPLSGGMRGIR 1595


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
            sapiens]
          Length = 1336

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 94   HHPKVRHLAPNRPSKSRTDRGVTLQPDLHLLQGESAPPFPWRGVR 138
            HH    HL P RP+          QP LHL+   S      RG+R
Sbjct: 1136 HHSSYVHLRPARPTSPPAHSHRDFQPVLHLVALNSPLSGGMRGIR 1180


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1516

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 94   HHPKVRHLAPNRPSKSRTDRGVTLQPDLHLLQGESAPPFPWRGVR 138
            HH    HL P RP+          QP LHL+   S      RG+R
Sbjct: 1316 HHSSYVHLRPARPTSPPAHSHRDFQPVLHLVALNSPLSGGMRGIR 1360


>gi|51317366 myosin XVIIIB [Homo sapiens]
          Length = 2567

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 56  DPRAAWRAWSVAVSFGAGGDCSFGRKE 82
           + RA WR  +     GA G C  GRK+
Sbjct: 819 EQRAVWRVLAAIYHLGAAGACKVGRKQ 845


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,146,553
Number of Sequences: 37866
Number of extensions: 351587
Number of successful extensions: 1464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 100
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.