Guide to the Human Genome
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Name: DKFZP434I0714 Sequence: fasta or formatted (142aa) NCBI GI: 169167220
Description:

PREDICTED: hypothetical protein LOC54553

Not currently referenced in the text

Other entries for this name:
alt mRNA {142aa} PREDICTED: hypothetical protein LOC54553
alt mRNA {142aa} PREDICTED: hypothetical protein LOC54553
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         13           2
 C cysteine            2.8          4           1
 D aspartate           4.2          6           1
 E glutamate           4.2          6           2
 F phenylalanine       2.1          3           1
 G glycine            12.7         18           2
 H histidine           3.5          5           2
 I isoleucine          0.0          0           0
 K lysine              3.5          5           1
 L leucine             5.6          8           2
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             9.2         13           2
 Q glutamine           2.8          4           1
 R arginine           16.2         23           2
 S serine              9.9         14           2
 T threonine           4.2          6           1
 V valine              5.6          8           1
 W tryptophan          2.1          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC54553 
DKFZP434I0714         1.000   PREDICTED: hypothetical protein LOC54553 
DKFZP434I0714         1.000   PREDICTED: hypothetical protein LOC54553 
FLJ37078              0.040   hypothetical protein LOC222183 
LOC100134317          0.036   PREDICTED: similar to hCG1820370 
TRIB3                 0.033   tribbles 3 
LOC100293408          0.029   PREDICTED: hypothetical protein 
LOC100289362          0.029   PREDICTED: hypothetical protein 
LOC100289362          0.029   PREDICTED: hypothetical protein XP_002343719 
LOC100288836          0.025   PREDICTED: hypothetical protein XP_002343912 
DCUN1D2               0.025   DCN1, defective in cullin neddylation 1, domain cont...
LOC389813             0.025   similar to CG15216-PA 
LOC100293933          0.018   PREDICTED: hypothetical protein 
LOC100290206          0.018   PREDICTED: hypothetical protein XP_002347062 
LOC100287139          0.018   PREDICTED: hypothetical protein XP_002342915 
BAT2                  0.018   HLA-B associated transcript-2 
LOC100293513          0.014   PREDICTED: hypothetical protein 
LOC100294343          0.014   PREDICTED: hypothetical protein XP_002344111 
CHD9                  0.014   chromodomain helicase DNA binding protein 9 
DENND4B               0.014   DENN/MADD domain containing 4B 
LOC100293749          0.014   PREDICTED: hypothetical protein 
LOC100291099          0.014   PREDICTED: hypothetical protein XP_002346573 
LOC100130825          0.014   PREDICTED: hypothetical protein 
LOC100289437          0.014   PREDICTED: hypothetical protein XP_002342135 
LOC645321             0.011   PREDICTED: hypothetical protein 
LOC100291550          0.011   PREDICTED: hypothetical protein XP_002346431 
COL18A1               0.011   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.011   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.011   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
MYO18B                0.011   myosin XVIIIB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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