Guide to the Human Genome
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Name: LOC100132805 Sequence: fasta or formatted (1022aa) NCBI GI: 169166139
Description:

PREDICTED: similar to predicted protein

Not currently referenced in the text

Other entries for this name:
alt prot {1002aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8        100           2
 C cysteine            6.4         65           2
 D aspartate           4.1         42           2
 E glutamate           4.5         46           1
 F phenylalanine       1.5         15           1
 G glycine             8.4         86           3
 H histidine           1.6         16           1
 I isoleucine          5.3         54           2
 K lysine              2.5         26           1
 L leucine             9.1         93           2
 M methionine          1.0         10           1
 N asparagine          0.8          8           2
 P proline             7.5         77           4
 Q glutamine           3.2         33           2
 R arginine           10.1        103           3
 S serine              8.8         90           2
 T threonine           6.8         70           1
 V valine              7.0         72           1
 W tryptophan          1.0         10           1
 Y tyrosine            0.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to predicted protein 
LOC100132805          0.969   PREDICTED: hypothetical protein 
MUC4                  0.016   mucin 4 isoform a 
FIGNL2                0.007   fidgetin-like 2 
LOC729815             0.007   PREDICTED: hypothetical protein 
TJAP1                 0.007   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.007   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.007   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.007   tight junction associated protein 1 isoform b [Homo...
TJAP1                 0.007   tight junction associated protein 1 isoform a [Homo...
TJAP1                 0.007   tight junction associated protein 1 isoform a [Homo...
LOC729815             0.006   PREDICTED: hypothetical protein 
EFS                   0.006   embryonal Fyn-associated substrate isoform 2 
EFS                   0.006   embryonal Fyn-associated substrate isoform 1 
WNK2                  0.006   WNK lysine deficient protein kinase 2 
C9orf75               0.006   hypothetical protein LOC286262 isoform 2 
C9orf75               0.006   hypothetical protein LOC286262 isoform 1 
CLEC2L                0.006   C-type lectin domain family 2, member L 
JMY                   0.005   junction-mediating and regulatory protein 
PHOX2B                0.005   paired-like homeobox 2b 
BOD1L                 0.005   biorientation of chromosomes in cell division 1-like...
FAM171A2              0.005   family with sequence similarity 171, member A2 [Hom...
ATP13A2               0.005   ATPase type 13A2 isoform 3 
YLPM1                 0.005   YLP motif containing 1 
TAF4                  0.004   TBP-associated factor 4 
FMNL2                 0.004   formin-like 2 
GLTSCR1               0.004   glioma tumor suppressor candidate region gene 1 [Ho...
GPR137                0.004   G protein-coupled receptor 137 
TNFRSF1B              0.004   tumor necrosis factor receptor 2 precursor 
LOC100289296          0.004   PREDICTED: hypothetical protein XP_002343918 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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