Guide to the Human Genome
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Name: PDIK1L Sequence: fasta or formatted (341aa) NCBI GI: 22779870
Description:

PDLIM1 interacting kinase 1 like

Referenced in:

LIM Domain Proteins
Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         23           2
 C cysteine            1.8          6           1
 D aspartate           5.0         17           1
 E glutamate           7.6         26           2
 F phenylalanine       3.8         13           1
 G glycine             5.0         17           2
 H histidine           2.1          7           1
 I isoleucine          6.2         21           3
 K lysine              7.6         26           3
 L leucine            10.9         37           2
 M methionine          3.5         12           1
 N asparagine          3.8         13           1
 P proline             4.4         15           1
 Q glutamine           3.8         13           1
 R arginine            4.4         15           1
 S serine              8.2         28           2
 T threonine           4.4         15           1
 V valine              6.5         22           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.9         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PDLIM1 interacting kinase 1 like 
STK35                 0.662   serine/threonine kinase 35 
STK33                 0.140   serine/threonine kinase 33 
ULK1                  0.107   Unc-51-like kinase 1 
NEK4                  0.104   NIMA-related kinase 4 
ULK2                  0.102   unc-51-like kinase 2 
ULK2                  0.102   unc-51-like kinase 2 
ULK3                  0.100   unc-51-like kinase 3 
DCLK1                 0.094   doublecortin-like kinase 1 
BRSK2                 0.093   BR serine/threonine kinase 2 
DCLK2                 0.093   doublecortin-like kinase 2 isoform b 
DCLK2                 0.093   doublecortin-like kinase 2 isoform a 
CDC2                  0.090   cell division cycle 2 isoform 3 
CDC2                  0.090   cell division cycle 2 isoform 1 
MARK3                 0.090   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.090   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.090   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.090   MAP/microtubule affinity-regulating kinase 3 isoform...
MAPK7                 0.088   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.088   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.088   mitogen-activated protein kinase 7 isoform 1 
BRSK1                 0.088   BR serine/threonine kinase 1 
CDKL3                 0.087   cyclin-dependent kinase-like 3 isoform 1 
CDKL3                 0.087   cyclin-dependent kinase-like 3 isoform 2 
HUNK                  0.087   hormonally upregulated Neu-associated kinase 
MARK4                 0.084   MAP/microtubule affinity-regulating kinase 4 
PNCK                  0.084   pregnancy upregulated non-ubiquitously expressed Ca...
PNCK                  0.084   pregnancy upregulated non-ubiquitously expressed Ca...
DCLK3                 0.084   doublecortin-like kinase 3 
MARK1                 0.084   MAP/microtubule affinity-regulating kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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