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Search of human proteins with 169161340
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161340 PREDICTED: hypothetical protein [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161340 PREDICTED: hypothetical protein [Homo sapiens] 369 e-103
gi|169161633 PREDICTED: hypothetical protein [Homo sapiens] 319 9e-88
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 36 0.015
gi|239757254 PREDICTED: hypothetical protein [Homo sapiens] 36 0.019
gi|11415052 retinoid X receptor, beta [Homo sapiens] 34 0.055
gi|74027257 polyglutamine binding protein 1 [Homo sapiens] 34 0.055
gi|74027255 polyglutamine binding protein 1 [Homo sapiens] 34 0.055
gi|74027253 polyglutamine binding protein 1 [Homo sapiens] 34 0.055
gi|74027247 polyglutamine binding protein 1 [Homo sapiens] 34 0.055
gi|5031957 polyglutamine binding protein 1 [Homo sapiens] 34 0.055
gi|7706469 Kruppel-like factor [Homo sapiens] 34 0.072
gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens] 34 0.072
gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens] 34 0.072
gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens] 34 0.072
gi|28875797 small protein rich in arginine and glycine [Homo sap... 33 0.094
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 33 0.094
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 33 0.094
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 33 0.094
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.094
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 33 0.094
gi|239757813 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|89060771 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo ... 33 0.16
gi|51477177 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo ... 33 0.16
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 33 0.16
gi|30425553 reticulon 4 receptor-like 1 [Homo sapiens] 33 0.16
gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens] 32 0.21
gi|239757968 PREDICTED: hypothetical protein [Homo sapiens] 32 0.21
>gi|169161340 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 369 bits (946), Expect = e-103
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP
Sbjct: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
Query: 61 EPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLER 120
EPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLER
Sbjct: 61 EPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLER 120
Query: 121 RAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 173
RAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI
Sbjct: 121 RAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 173
>gi|169161633 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 319 bits (817), Expect = 9e-88
Identities = 158/180 (87%), Positives = 159/180 (88%), Gaps = 15/180 (8%)
Query: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP
Sbjct: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
Query: 61 EPPPARFRGAPGLSDVCCPRLGK-------GWVGKEQRRRRWKLRAGAGVRRDVGGHRGP 113
EPPPARFRGAPGLSDVCCPRLGK W G E + W VRRDVGGHRGP
Sbjct: 61 EPPPARFRGAPGLSDVCCPRLGKVEWGITEAW-GAEGFGKAW-------VRRDVGGHRGP 112
Query: 114 TVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 173
TVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI
Sbjct: 113 TVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 172
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 36.6 bits (83), Expect = 0.011
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 45 NGLGAGGEAGSERSLPEPPPARFRGAPGLSDVCC--PRLGKGWVGKEQRRRRWKLR--AG 100
N AG + + E P A+ RG G + PR G+G GK+ RRR K A
Sbjct: 280 NAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRG--GKKPRRRGQKATKAAA 337
Query: 101 AGVRRDVGGHRGPTVEGLERRAQER 125
AG +R GG + V G++ R ++R
Sbjct: 338 AGTKRGGGGQQKAAVVGVKSRKKQR 362
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 36.2 bits (82), Expect = 0.015
Identities = 41/129 (31%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 4 SLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP-EP 62
S L P + S LP+ PL L R G N V G E +LP
Sbjct: 199 STLPPELPSGPPGLPSP----PLPEEALGTRSPGDGHNAPVEGPEGEYVELLEVTLPVRG 254
Query: 63 PPARFRGAPGLSDVCC--PRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLER 120
P G+PGLS V R G G G+ +R R W + G G R G P EG
Sbjct: 255 SPTDAEGSPGLSRVRTVPTRKGAGGKGRHRRHRAWMHQKGLGPRGQDGAR--PPGEGSST 312
Query: 121 RAQERVPRG 129
A P G
Sbjct: 313 GASPESPPG 321
>gi|239757254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 35.8 bits (81), Expect = 0.019
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 104 RRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSP 163
R G G + R VP VLPGPR GSC P GP PP +
Sbjct: 3 RGSTGAAAGEEAMPMRREVYLEVPSSRFSWKVLPGPRSGSCFPPSLLWGP-DSHFPPANS 61
Query: 164 SKPPQHLPFI 173
S LPF+
Sbjct: 62 SSQVAPLPFL 71
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 34.3 bits (77), Expect = 0.055
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 84 GWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGS 143
G + +RRR W A A GG E++ E P G + R S
Sbjct: 31 GVASRWRRRRPWLDPAAAAAAAVAGG---------EQQTPEPEPGEAGRDG-MGDSGRDS 80
Query: 144 CKPSQTCSGPLFQGDPPPSPSKPP 167
P + PL QG PPPSP PP
Sbjct: 81 RSPDSSSPNPLPQGVPPPSPPGPP 104
>gi|74027257 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 34.3 bits (77), Expect = 0.055
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 87 GKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKP 146
GKE+R R + A + + ++ ++ + PRGT G+ P+R K
Sbjct: 173 GKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGL---PKRNEAKT 229
Query: 147 SQ--TCSGPLFQGDPPPSP 163
T +GPLFQ P PSP
Sbjct: 230 GADTTAAGPLFQQRPYPSP 248
>gi|74027255 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 34.3 bits (77), Expect = 0.055
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 87 GKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKP 146
GKE+R R + A + + ++ ++ + PRGT G+ P+R K
Sbjct: 173 GKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGL---PKRNEAKT 229
Query: 147 SQ--TCSGPLFQGDPPPSP 163
T +GPLFQ P PSP
Sbjct: 230 GADTTAAGPLFQQRPYPSP 248
>gi|74027253 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 34.3 bits (77), Expect = 0.055
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 87 GKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKP 146
GKE+R R + A + + ++ ++ + PRGT G+ P+R K
Sbjct: 173 GKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGL---PKRNEAKT 229
Query: 147 SQ--TCSGPLFQGDPPPSP 163
T +GPLFQ P PSP
Sbjct: 230 GADTTAAGPLFQQRPYPSP 248
>gi|74027247 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 34.3 bits (77), Expect = 0.055
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 87 GKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKP 146
GKE+R R + A + + ++ ++ + PRGT G+ P+R K
Sbjct: 173 GKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGL---PKRNEAKT 229
Query: 147 SQ--TCSGPLFQGDPPPSP 163
T +GPLFQ P PSP
Sbjct: 230 GADTTAAGPLFQQRPYPSP 248
>gi|5031957 polyglutamine binding protein 1 [Homo sapiens]
Length = 265
Score = 34.3 bits (77), Expect = 0.055
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 87 GKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKP 146
GKE+R R + A + + ++ ++ + PRGT G+ P+R K
Sbjct: 173 GKERRHHRREELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGL---PKRNEAKT 229
Query: 147 SQ--TCSGPLFQGDPPPSP 163
T +GPLFQ P PSP
Sbjct: 230 GADTTAAGPLFQQRPYPSP 248
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.072
Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 33/137 (24%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPG------------LSDVCCPR----LGKGWVGKEQR 91
G G EA E P PPPA + PG +S++ P LG G+
Sbjct: 55 GLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRPELDAPLGPALHGRFLL 114
Query: 92 RRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTC- 150
+L D GG G GL R PRG + R G+ P+ +C
Sbjct: 115 APPGRLVKAEPPEADGGGGYG-CAPGLTRG-----PRGLK--------REGAPGPAASCM 160
Query: 151 SGPLFQGDPPPSPSKPP 167
GP G PPP P PP
Sbjct: 161 RGP--GGRPPPPPDTPP 175
>gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 33.9 bits (76), Expect = 0.072
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 80 RLGKGWVGKEQR-----RRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGG 134
R+ KG K+QR R RW+ + A D R E + E +P+GT +
Sbjct: 1164 RVSKGLHPKKQRHLLHLRERWEQQVSAA---DGKPGRQSRKEVTQATQPEAIPQGTNITE 1220
Query: 135 VLPGPRRG-----------SCKPSQTCSG-PLFQGDPP 160
PG +R S KPS G P+F G PP
Sbjct: 1221 EKPGRKRAEAKGNRSWSEESLKPSDNEQGLPVFSGSPP 1258
>gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens]
Length = 1703
Score = 33.9 bits (76), Expect = 0.072
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 80 RLGKGWVGKEQR-----RRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGG 134
R+ KG K+QR R RW+ + A D R E + E +P+GT +
Sbjct: 1146 RVSKGLHPKKQRHLLHLRERWEQQVSAA---DGKPGRQSRKEVTQATQPEAIPQGTNITE 1202
Query: 135 VLPGPRRG-----------SCKPSQTCSG-PLFQGDPP 160
PG +R S KPS G P+F G PP
Sbjct: 1203 EKPGRKRAEAKGNRSWSEESLKPSDNEQGLPVFSGSPP 1240
>gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 33.9 bits (76), Expect = 0.072
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 80 RLGKGWVGKEQR-----RRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVPRGTRVGG 134
R+ KG K+QR R RW+ + A D R E + E +P+GT +
Sbjct: 1164 RVSKGLHPKKQRHLLHLRERWEQQVSAA---DGKPGRQSRKEVTQATQPEAIPQGTNITE 1220
Query: 135 VLPGPRRG-----------SCKPSQTCSG-PLFQGDPP 160
PG +R S KPS G P+F G PP
Sbjct: 1221 EKPGRKRAEAKGNRSWSEESLKPSDNEQGLPVFSGSPP 1258
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 33.5 bits (75), Expect = 0.094
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 14 KDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLPEPPPARFRGAPGL 73
+ L GR R L RG + LR G+N L G G R R RG PG
Sbjct: 114 RGGLRGGRATRTLLRGGMSLR----GQNLLRGGRAVAPRMGLRRG-----GVRGRGGPGR 164
Query: 74 SDVCCPRLGKGWVGKEQRRRRWKLRAGAGVR-RDVGGHRG 112
+ +G+G +G R + R G G R R G RG
Sbjct: 165 GGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.094
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 136 LPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHL 170
+PGPR G KP G F G PPP P PP L
Sbjct: 200 MPGPRLGPGKP-----GLKFNGPPPPPPPPPPHLL 229
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 33.5 bits (75), Expect = 0.094
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 136 LPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHL 170
+PGPR G KP G F G PPP P PP L
Sbjct: 200 MPGPRLGPGKP-----GLKFNGPPPPPPPPPPHLL 229
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.094
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 136 LPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHL 170
+PGPR G KP G F G PPP P PP L
Sbjct: 200 MPGPRLGPGKP-----GLKFNGPPPPPPPPPPHLL 229
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.094
Identities = 45/166 (27%), Positives = 57/166 (34%), Gaps = 38/166 (22%)
Query: 14 KDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAG-----SERSLPEPP-PARF 67
+D +P G G R G G G+ G+ G E P PP P+
Sbjct: 526 RDGVPGGPGMR--------------GMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP 571
Query: 68 RGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQERVP 127
RG PG+ P+ G GK R GG GP +G + E P
Sbjct: 572 RGQPGVMGFPGPKGNDGAPGKNGER---------------GGPGGPGPQGPPGKNGETGP 616
Query: 128 RGTRVGGVLPGPRRGSCKP--SQTCSGPLFQGDPPPSPSKPPQHLP 171
+G G PG +G P Q G G PP KP + P
Sbjct: 617 QGP-PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGP 661
Score = 32.7 bits (73), Expect = 0.16
Identities = 38/126 (30%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDV 107
G GE G + EP P RG G+ V + G G L AG R
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAG-ERGA 487
Query: 108 GGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQ--TCSGPLFQGDP-----P 160
G RGP G E+ P G R GPR + +P + GP +G P P
Sbjct: 488 PGFRGPA--GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 161 PSPSKP 166
S KP
Sbjct: 546 GSDGKP 551
Score = 30.8 bits (68), Expect = 0.61
Identities = 38/121 (31%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDV 107
G GE+G P PA RGAPG PR KG G+ R AG++
Sbjct: 1062 GDRGESGPAGPAGAPGPAGSRGAPGPQG---PRGDKGETGE---------RGAAGIK--- 1106
Query: 108 GGHRG-PTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDP----PPS 162
GHRG P G +G +G P RG PS G P PP
Sbjct: 1107 -GHRGFPGNPGAPGSPGPAGQQGA-IGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPG 1164
Query: 163 P 163
P
Sbjct: 1165 P 1165
Score = 30.0 bits (66), Expect = 1.0
Identities = 37/131 (28%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDV 107
G GG G EP P GAPG GKG G R L G+R
Sbjct: 645 GTGGPPGENGKPGEPGPKGDAGAPGAPG------GKGDAGAPGERGPPGLAGAPGLR--- 695
Query: 108 GGHRGPTVEGLERRAQERVPRGT------------RVGGVLPGPRRGSCKPSQTCSGPLF 155
GG P EG + A P G R G PGP+ +P + +
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 156 QGDPPPSPSKP 166
D P P+ P
Sbjct: 756 GKDGPRGPTGP 766
Score = 29.3 bits (64), Expect = 1.8
Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 24/134 (17%)
Query: 8 PRMNSSKDSLPAGRGER--PLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLPEPPPA 65
P+ ++ P G+G+ P RG L G L G G G G + + P P
Sbjct: 661 PKGDAGAPGAPGGKGDAGAPGERGPPGLA----GAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Query: 66 RFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQER 125
G PGL + R G G G + D G GP +G+ + R
Sbjct: 717 GAAGTPGLQGMPGERGGLG---------------SPGPKGDKGEPGGPGADGVPGKDGPR 761
Query: 126 VPRGTRVGGVLPGP 139
P G +G PGP
Sbjct: 762 GPTGP-IGP--PGP 772
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 33.5 bits (75), Expect = 0.094
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 106 DVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRR--GSCKPSQTCSGPLFQGDPPPSP 163
+ G VE L+++ +P+ G+LP P R G P+ P+ G PPP P
Sbjct: 487 EAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPQAPTSPNGRPMQGGPPPPPP 546
Query: 164 SKPP 167
PP
Sbjct: 547 PPPP 550
>gi|239757813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.16
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 57 RSLPEPPPARFRGAP--GLSDVCCPRL---------GKGWVGKEQRRRRWKLRAGAGVR 104
R P PPA G S CPR+ K W+GK +R+RRW+ AG R
Sbjct: 30 RKRPGDPPAACAAIAVMGASRAQCPRVQVGVGSHAAAKRWLGKLRRKRRWRRAREAGSR 88
>gi|89060771 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.16
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 57 RSLPEPPPARFRGAP--GLSDVCCPRL---------GKGWVGKEQRRRRWKLRAGAGVR 104
R P PPA G S CPR+ K W+GK +R+RRW+ AG R
Sbjct: 30 RKRPGDPPAACAAIAVMGASRAQCPRVQVGVGSHAAAKRWLGKLRRKRRWRRAREAGSR 88
>gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo
sapiens]
Length = 85
Score = 32.7 bits (73), Expect = 0.16
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 102 GVRRDVGGHRGPTVEGLERRAQERVPRGTRVG------------GVLPGPRRGSCKPSQT 149
G+R GG RGP E L+RR R +++ G++PG +C+P
Sbjct: 6 GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQ 65
Query: 150 CSG 152
C+G
Sbjct: 66 CAG 68
>gi|51477177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.16
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 57 RSLPEPPPARFRGAP--GLSDVCCPRL---------GKGWVGKEQRRRRWKLRAGAGVR 104
R P PPA G S CPR+ K W+GK +R+RRW+ AG R
Sbjct: 30 RKRPGDPPAACAAIAVMGASRAQCPRVQVGVGSHAAAKRWLGKLRRKRRWRRAREAGSR 88
>gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo
sapiens]
Length = 85
Score = 32.7 bits (73), Expect = 0.16
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 102 GVRRDVGGHRGPTVEGLERRAQERVPRGTRVG------------GVLPGPRRGSCKPSQT 149
G+R GG RGP E L+RR R +++ G++PG +C+P
Sbjct: 6 GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQ 65
Query: 150 CSG 152
C+G
Sbjct: 66 CAG 68
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 32.7 bits (73), Expect = 0.16
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 104 RRDVGGHRGPTVEGLERRAQE-RVPRGTRVGGVLP--GPRRGSCKPSQTCSG-----PLF 155
+RDV G G T +G RA R+P T G ++P PR G+ + + P
Sbjct: 114 QRDVAG--GKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNV 171
Query: 156 QGDPPPSPSKPPQHLP 171
PPP+P PP LP
Sbjct: 172 PAPPPPTPPPPPPPLP 187
>gi|30425553 reticulon 4 receptor-like 1 [Homo sapiens]
Length = 441
Score = 32.7 bits (73), Expect = 0.16
Identities = 24/88 (27%), Positives = 32/88 (36%)
Query: 66 RFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLRAGAGVRRDVGGHRGPTVEGLERRAQER 125
RFRG+ P L G K R ++ G + H T + R+
Sbjct: 272 RFRGSSSAVPCVSPGLRHGQDLKLLRAEDFRNCTGPASPHQIKSHTLTTTDRAARKEHHS 331
Query: 126 VPRGTRVGGVLPGPRRGSCKPSQTCSGP 153
TR G GPR G KP + C+ P
Sbjct: 332 PHGPTRSKGHPHGPRPGHRKPGKNCTNP 359
>gi|194353970 alpha-2A-adrenergic receptor [Homo sapiens]
Length = 465
Score = 32.3 bits (72), Expect = 0.21
Identities = 36/121 (29%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 39 GRNHLVNGLGAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKGWVGKEQRRRRWKLR 98
G NGLG AG + EP P + GAPG PR + E+
Sbjct: 260 GTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPGEPAPAGPR-DTDALDLEESSSSDHAE 318
Query: 99 AGAGVRRDVGGHRGPTVEGLERRAQ--------ERVPRGTRVGGVLPGP---RRGSCKPS 147
G RR RGP +G R +Q R P T +G GP R G+ K S
Sbjct: 319 RPPGPRRP---ERGPRGKGKARASQVKPGDSLPRRGPGATGIGTPAAGPGEERVGAAKAS 375
Query: 148 Q 148
+
Sbjct: 376 R 376
>gi|239757968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 16 SGGRAGSPRSLAPPAAARAEGAPG 39
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.142 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,243,122
Number of Sequences: 37866
Number of extensions: 645635
Number of successful extensions: 4008
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 3748
Number of HSP's gapped (non-prelim): 442
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.