Guide to the Human Genome
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Name: PQBP1 Sequence: fasta or formatted (265aa) NCBI GI: 5031957
Description:

polyglutamine binding protein 1

Referenced in:

Cerebellum
WW Domain

Other entries for this name:
alt mRNA [265aa] polyglutamine binding protein 1
alt mRNA [265aa] polyglutamine binding protein 1
alt mRNA [265aa] polyglutamine binding protein 1
alt mRNA [265aa] polyglutamine binding protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         20           2
 C cysteine            0.4          1           1
 D aspartate          12.8         34           3
 E glutamate           9.1         24           3
 F phenylalanine       0.8          2           1
 G glycine             5.3         14           1
 H histidine           3.4          9           2
 I isoleucine          1.1          3           2
 K lysine              8.3         22           2
 L leucine             6.8         18           1
 M methionine          0.8          2           1
 N asparagine          1.9          5           1
 P proline             7.9         21           2
 Q glutamine           1.9          5           2
 R arginine           11.3         30           2
 S serine              8.3         22           2
 T threonine           3.8         10           2
 V valine              3.4          9           2
 W tryptophan          1.5          4           1
 Y tyrosine            3.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polyglutamine binding protein 1 
PQBP1                 1.000   polyglutamine binding protein 1 
PQBP1                 1.000   polyglutamine binding protein 1 
PQBP1                 1.000   polyglutamine binding protein 1 
PQBP1                 1.000   polyglutamine binding protein 1 
ZC3H13                0.064   zinc finger CCCH-type containing 13 
RBM25                 0.064   RNA binding motif protein 25 
RDBP                  0.062   RD RNA-binding protein 
LOC100286959          0.061   PREDICTED: hypothetical protein XP_002343921 
SFRS12                0.055   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.055   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100134067          0.055   PREDICTED: hypothetical protein 
DIDO1                 0.055   death inducer-obliterator 1 isoform c 
TRAF3IP1              0.053   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.053   TNF receptor-associated factor 3 interacting protein...
PRPF38B               0.053   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100131202          0.051   PREDICTED: hypothetical protein 
LOC100131202          0.051   PREDICTED: hypothetical protein 
DDX23                 0.049   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX46                 0.049   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
ACIN1                 0.047   apoptotic chromatin condensation inducer 1 
ZC3H18                0.047   zinc finger CCCH-type containing 18 
RSRC2                 0.047   arginine/serine-rich coiled-coil 2 isoform a 
DHX38                 0.045   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
FIP1L1                0.045   FIP1 like 1 isoform 3 
FIP1L1                0.045   FIP1 like 1 isoform 2 
FIP1L1                0.045   FIP1 like 1 isoform 1 
HRC                   0.045   histidine rich calcium binding protein precursor [Hom...
LOC100288837          0.044   PREDICTED: hypothetical protein XP_002343931, parti...
SNRNP70               0.044   U1 small nuclear ribonucleoprotein 70 kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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