Guide to the Human Genome
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Name: LOC100288393 Sequence: fasta or formatted (157aa) NCBI GI: 239746524
Description:

PREDICTED: hypothetical protein XP_002343765

Not currently referenced in the text

Other entries for this name:
alt mRNA {157aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.6         26           2
 C cysteine            0.0          0           0
 D aspartate           5.1          8           1
 E glutamate           8.3         13           1
 F phenylalanine       3.2          5           1
 G glycine             8.3         13           2
 H histidine           3.2          5           1
 I isoleucine          1.3          2           1
 K lysine              0.0          0           0
 L leucine            15.9         25           2
 M methionine          1.9          3           1
 N asparagine          0.0          0           0
 P proline             5.1          8           1
 Q glutamine           2.5          4           1
 R arginine            7.6         12           2
 S serine              1.3          2           1
 T threonine           3.8          6           1
 V valine             14.0         22           2
 W tryptophan          1.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343765 
LOC100292107          1.000   PREDICTED: hypothetical protein XP_002345458 
LOC100288393          1.000   PREDICTED: hypothetical protein 
LOC100289978          0.028   PREDICTED: hypothetical protein XP_002348035 
LOC728806             0.014   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100294345          0.014   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100293166          0.011   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.011   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.011   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.011   PREDICTED: similar to ribosomal protein L36a 
NLRX1                 0.007   NLR family member X1 isoform 1 
NLRX1                 0.007   NLR family member X1 isoform 2 
LOC100293109          0.007   PREDICTED: hypothetical protein 
ALDH9A1               0.007   aldehyde dehydrogenase 9A1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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