Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 16905522
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16905522 golgi SNAP receptor complex member 2 isoform A
[Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo... 419 e-117
gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo... 386 e-108
gi|60499013 golgi SNAP receptor complex member 2 isoform C [Homo... 318 3e-87
gi|45505178 cancer antigen 1 [Homo sapiens] 41 9e-04
gi|239756999 PREDICTED: ankyrin repeat domain 62 [Homo sapiens] 39 0.002
gi|239751514 PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo... 39 0.002
gi|239746016 PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo... 39 0.002
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 38 0.007
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 38 0.007
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 38 0.007
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 38 0.007
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 38 0.007
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 38 0.007
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 38 0.007
gi|156104908 myosin heavy chain 6 [Homo sapiens] 38 0.007
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 36 0.028
gi|7662230 ring finger protein 40 [Homo sapiens] 36 0.028
gi|113374156 SNARE Vti1a-beta protein [Homo sapiens] 35 0.036
gi|7705415 hook homolog 1 [Homo sapiens] 35 0.036
gi|38569484 kinesin family member 21A [Homo sapiens] 35 0.036
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 35 0.036
gi|46852390 coiled-coil domain containing 6 [Homo sapiens] 35 0.061
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 34 0.10
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 34 0.10
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 34 0.10
gi|83716024 kinesin family member 21B [Homo sapiens] 33 0.18
gi|119395750 keratin 1 [Homo sapiens] 33 0.23
gi|19923559 EMSY protein [Homo sapiens] 33 0.23
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 33 0.23
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 33 0.23
>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
sapiens]
Length = 212
Score = 419 bits (1076), Expect = e-117
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
Sbjct: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
Query: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
Sbjct: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
Query: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180
DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
Sbjct: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180
Query: 181 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT 212
LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
Sbjct: 181 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT 212
>gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo
sapiens]
Length = 213
Score = 386 bits (991), Expect = e-108
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
Sbjct: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
Query: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
Sbjct: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
Query: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180
DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
Sbjct: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180
Query: 181 LIEKRAFQDKYFMIG 195
LIEKRAFQDKYFMIG
Sbjct: 181 LIEKRAFQDKYFMIG 195
>gi|60499013 golgi SNAP receptor complex member 2 isoform C [Homo
sapiens]
Length = 195
Score = 318 bits (814), Expect = 3e-87
Identities = 166/187 (88%), Positives = 170/187 (90%), Gaps = 5/187 (2%)
Query: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
Sbjct: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
Query: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
Sbjct: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
Query: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLK-----GTQKKILDIANMLGLS 175
DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLK G ++K + + S
Sbjct: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKVGSLLGDREKASCFSLIQQFS 180
Query: 176 NTVMRLI 182
N V LI
Sbjct: 181 NCVYILI 187
>gi|45505178 cancer antigen 1 [Homo sapiens]
Length = 641
Score = 40.8 bits (94), Expect = 9e-04
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
MD + ++V +Q LE A ++ +++ E +A + S E + L KE
Sbjct: 305 MDKTLSKKEEEVERLQQLKKELEKATASALDLLKREKEAQEQEFLSLQEEFQKLE-KENL 363
Query: 61 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQ---ERQREELLSRTFTTNDSDTT 117
+RQ + R+++L V++LQ N + + +QQ + L + ++
Sbjct: 364 EERQKLKSRLEKLLTQVRNLQFMSENERTKNIKLQQQINEVKNENAKLKQQVARSEEQNY 423
Query: 118 IPMDESLQFNSSLQKV 133
+P E+ Q L++V
Sbjct: 424 VPKFETAQLKDQLEEV 439
>gi|239756999 PREDICTED: ankyrin repeat domain 62 [Homo sapiens]
Length = 917
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 28 QSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR--VDQLKYDVQHLQTALR 85
+S+ + ++++ +Q F ER L + + + ARLR +D +K+ Q+ +T +
Sbjct: 531 KSLEVELKTVRSNSNQNFHTHERERDLWQENHLMRDEIARLRLEIDTIKH--QNQETENK 588
Query: 86 NFQHRRHAREQQE------RQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
F+ +E E ++ EE L++T T + + MDE+ NS LQK M
Sbjct: 589 YFKDIEIIKENNEDLEKTLKRNEETLTKTITRYSKELNVLMDENTMLNSELQKEKQSMSR 648
Query: 140 L 140
L
Sbjct: 649 L 649
>gi|239751514 PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo
sapiens]
Length = 917
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 28 QSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR--VDQLKYDVQHLQTALR 85
+S+ + ++++ +Q F ER L + + + ARLR +D +K+ Q+ +T +
Sbjct: 531 KSLEVELKTVRSNSNQNFHTHERERDLWQENHLMRDEIARLRLEIDTIKH--QNQETENK 588
Query: 86 NFQHRRHAREQQE------RQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
F+ +E E ++ EE L++T T + + MDE+ NS LQK M
Sbjct: 589 YFKDIEIIKENNEDLEKTLKRNEETLTKTITRYSKELNVLMDENTMLNSELQKEKQSMSR 648
Query: 140 L 140
L
Sbjct: 649 L 649
>gi|239746016 PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo
sapiens]
Length = 917
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 28 QSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR--VDQLKYDVQHLQTALR 85
+S+ + ++++ +Q F ER L + + + ARLR +D +K+ Q+ +T +
Sbjct: 531 KSLEVELKTVRSNSNQNFHTHERERDLWQENHLMRDEIARLRLEIDTIKH--QNQETENK 588
Query: 86 NFQHRRHAREQQE------RQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
F+ +E E ++ EE L++T T + + MDE+ NS LQK M
Sbjct: 589 YFKDIEIIKENNEDLEKTLKRNEEALTKTITRYSKELNVLMDENTMLNSELQKEKQSMSR 648
Query: 140 L 140
L
Sbjct: 649 L 649
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 1673 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1729
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 1730 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1789
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 1790 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1820
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 337 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 393
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 394 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 453
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 454 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 484
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 340 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 396
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 397 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 456
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 457 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 487
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 1558 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1614
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 1615 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1674
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 1675 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1705
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 1677 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1733
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 1734 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1793
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 1794 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1824
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 1558 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1614
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 1615 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1674
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 1675 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1705
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 37.7 bits (86), Expect = 0.007
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 22 LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
+ET D+ HI + IQA D + E+ + KE KR A L + K D Q
Sbjct: 1681 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1737
Query: 82 TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
A H R+ E Q EL R + +IP+ E QFNS +QK+ +
Sbjct: 1738 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1797
Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
+ I G N+ D + +GT K++L
Sbjct: 1798 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1828
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 37.7 bits (86), Expect = 0.007
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQ--ASIDQIFSRLERLEILSSKE 58
M L Q+ + ++Q+ L A+++ +++N+IQ A + ++ RLE E ++++
Sbjct: 879 MVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAEL 938
Query: 59 PPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQER-----------------QR 101
KR+ +LK D+ L+ L + +HA E + + +
Sbjct: 939 TAKKRK-LEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKE 997
Query: 102 EELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGT 161
++ L D + D+ + S K+ +DDL L+ + R+ L+
Sbjct: 998 KKALQEAHQQALDDLQVEEDKVNSLSKSKVKLEQQVDDL----EGSLEQEKKVRMDLERA 1053
Query: 162 QKKI-----LDIANMLGLSNTVMRLIEK 184
++K+ L +++ L N ++L EK
Sbjct: 1054 KRKLEGDLKLTQESIMDLENDKLQLEEK 1081
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 6 QQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKE-PPNKRQ 64
++ ++ E++ + TA + V + +++ +++I RLE +S + NK++
Sbjct: 1111 KENQARIEELEEELEAERTA-RAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKR 1169
Query: 65 NA---RLRVDQLKYDVQHLQTALRNFQHRRHARE-----------QQERQREELLSRTFT 110
A ++R D + +QH TA ++HA Q+ +Q+ E F
Sbjct: 1170 EAEFQKMRRDLEEATLQHEATAAA--LRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFK 1227
Query: 111 TNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
D T M++ ++ ++L+KV ++D
Sbjct: 1228 LELDDVTSNMEQIIKAKANLEKVSRTLED 1256
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 35.8 bits (81), Expect = 0.028
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 1 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQ--ASIDQIFSRLERLEILSSKE 58
M L Q+ + ++Q+ L A+++ +++N+IQ A + ++ RLE E ++++
Sbjct: 877 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAEL 936
Query: 59 PPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREE 103
KR+ +LK D+ L+ L + +HA E + + E
Sbjct: 937 TAKKRK-LEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTE 980
Score = 29.6 bits (65), Expect = 2.0
Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 4 LFQQTHKQVHEIQSCMGRLET------ADKQSVHIVENEIQASIDQIFSRLERLEILSSK 57
L Q K++ E+Q+ + LE + V + +++ +++I RLE +S
Sbjct: 1100 LGSQLQKKLKELQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSV 1159
Query: 58 E-PPNKRQNA---RLRVDQLKYDVQHLQTALRNFQHRRHARE-----------QQERQRE 102
+ NK++ A ++R D + +QH TA ++HA Q+ +Q+
Sbjct: 1160 QIEMNKKREAEFQKMRRDLEEATLQHEATAAA--LRKKHADSVAELGEQIDNLQRVKQKL 1217
Query: 103 ELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
E F D T M++ ++ ++L+K+ ++D
Sbjct: 1218 EKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLED 1254
>gi|7662230 ring finger protein 40 [Homo sapiens]
Length = 1001
Score = 35.8 bits (81), Expect = 0.028
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 21/167 (12%)
Query: 23 ETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPN-KRQNARLRVDQLKYDVQHLQ 81
E DK + E + +A +D++ SR+ LE +E ++A R+ Q + ++HLQ
Sbjct: 682 EQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQ 741
Query: 82 TALRNFQHRRHAR-----------EQQERQREELLSRTFTTNDSDTTIPMDESLQFNSSL 130
L + A E + Q LL + +D++ + M E ++ N
Sbjct: 742 RKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKL-MSERIKANQIH 800
Query: 131 QKVHNGMDDLILDGHNILDGLRT----QRLTLKGTQKKILDIANMLG 173
+ + D+L G +L GL++ Q LT++ ++K + LG
Sbjct: 801 KLLREEKDEL---GEQVL-GLKSQVDAQLLTVQKLEEKERALQGSLG 843
>gi|113374156 SNARE Vti1a-beta protein [Homo sapiens]
Length = 217
Score = 35.4 bits (80), Expect = 0.036
Identities = 35/202 (17%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 14 EIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQL 73
EI S + R+ + ++ +++ LE++++ + PP R R+
Sbjct: 18 EITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSY 77
Query: 74 KYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKV 133
K ++ L+T +F+ R A + R ELL ++++ +D + + S +++
Sbjct: 78 KQEMGKLET---DFKRSRIA--YSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRL 132
Query: 134 HNGMDDLILD---GHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDK 190
G + G +L+ L R ++ ++++ + LG S+ ++ + +R Q++
Sbjct: 133 EAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNR 192
Query: 191 YFMIGGMLLTCVVMFLVVQYLT 212
++ +L +V+ ++ +T
Sbjct: 193 ILLV---ILGIIVVITILMAIT 211
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 35.4 bits (80), Expect = 0.036
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 15 IQSCMGRLETADKQSVHI-----VENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR 69
+Q +G +K+ HI +E +Q + L EILSS PPN +
Sbjct: 121 LQLILGCAINCEKKQEHIQNIMTLEESVQHVVMTAIQELMSKEILSS--PPNDAVGELEQ 178
Query: 70 VDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNSS 129
QLK ++ LQ AL A +++ RQR E L TT + + E+ N
Sbjct: 179 --QLKRALEELQEAL--------AEKEELRQRCEELDMQVTTLQDEKNSLVSENEMMNEK 228
Query: 130 LQKVHNGMDD 139
L ++ DD
Sbjct: 229 LDQLDGSFDD 238
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 35.4 bits (80), Expect = 0.036
Identities = 21/103 (20%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 10 KQVHEIQSCMGRLETADKQSVHIVENEIQ-----ASIDQIFSRLERLEILSSKEPPNKRQ 64
K++ + + RL+ A K+ +++N+ Q + Q +++ ++ K+ +++
Sbjct: 710 KKLQAMNKELQRLQAAQKEHARLLKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKEEQE 769
Query: 65 NARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSR 107
ARL + ++ L+ R H+ E Q+R +E +L R
Sbjct: 770 KARLTESRRNREIAQLKKDQRKRDHQLRLLEAQKRNQEVVLRR 812
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal
[Homo sapiens]
Length = 1937
Score = 35.4 bits (80), Expect = 0.036
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 14 EIQSCMGRLETADKQSVHIVENEIQ--ASIDQIFSRLERLEILSSKEPPNKRQNARLRVD 71
++QS L A+++ +++N+IQ A I ++ R E E ++++ KR+
Sbjct: 893 QVQSEADSLADAEERCEQLIKNKIQLEAKIKEVTERAEEEEEINAELTAKKRK-LEDECS 951
Query: 72 QLKYDVQHLQTALRNFQHRRHAREQQERQREE 103
+LK D+ L+ L + +HA E + + E
Sbjct: 952 ELKKDIDDLELTLAKVEKEKHATENKVKNLTE 983
>gi|46852390 coiled-coil domain containing 6 [Homo sapiens]
Length = 474
Score = 34.7 bits (78), Expect = 0.061
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 42/135 (31%)
Query: 33 VENEIQASIDQIFSRLERLE----ILSSK------EPPNKR---------QNARLRVDQL 73
+E E +A +++++ R+++LE IL K PP+ R +N + L
Sbjct: 206 LEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFL 265
Query: 74 KYDVQHLQTALR--NFQH----------RRHARE---------QQERQREELLSRTFTTN 112
K +V+ L+ LR QH RH RE Q+E +R E L R +
Sbjct: 266 KNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLS-- 323
Query: 113 DSDTTIPMDESLQFN 127
+S++++ MD+ FN
Sbjct: 324 ESESSLEMDDERYFN 338
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 33.9 bits (76), Expect = 0.10
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 6 QQTHKQVHEIQSCMGRLETADK---------QSVHIVENEIQASIDQIFSRLERLEILSS 56
Q+ ++ H++ + ++E K Q + NE+++ QI + L+R + L
Sbjct: 691 QEKQEKQHKLDTVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEE 750
Query: 57 K--EPPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDS 114
+ E + Q+ + K V L+T L FQ +++EEL+++ T+N
Sbjct: 751 QTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQ----------QEKEELINKKNTSNK- 799
Query: 115 DTTIPMDESLQFNSSLQKVHNGMDDL 140
I D+ ++ +H M D+
Sbjct: 800 ---IAQDKLNDIKEKVKNIHGYMKDI 822
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 33.9 bits (76), Expect = 0.10
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 6 QQTHKQVHEIQSCMGRLETADK---------QSVHIVENEIQASIDQIFSRLERLEILSS 56
Q+ ++ H++ + ++E K Q + NE+++ QI + L+R + L
Sbjct: 830 QEKQEKQHKLDTVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEE 889
Query: 57 K--EPPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDS 114
+ E + Q+ + K V L+T L FQ +++EEL+++ T+N
Sbjct: 890 QTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQ----------QEKEELINKKNTSNK- 938
Query: 115 DTTIPMDESLQFNSSLQKVHNGMDDL 140
I D+ ++ +H M D+
Sbjct: 939 ---IAQDKLNDIKEKVKNIHGYMKDI 961
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 33.9 bits (76), Expect = 0.10
Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 2 DPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRL-ERLEILSSKEPP 60
D +++Q +Q EI + + R ++ +E + +A+ + RL E+L IL + P
Sbjct: 442 DEIWKQRRRQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKRLDEKLGILEKQPSP 501
Query: 61 NK-RQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQRE 102
+ R+ R + + + +++ Q R + + QQE+++E
Sbjct: 502 EEIREREREKEREREKELEKEQEQEREKEREKDRERQQEKEKE 544
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 10 KQVHEIQSCMGRLETADKQ---SVHIVENEI---QASIDQIFSRLERLEILSSKEPPNKR 63
K + E+++ RL+T Q + +++N+I Q D++ L +E + ++ +
Sbjct: 648 KLIDELENSQRRLQTLKHQYEEKLILLQNKIRDTQLERDRVLQNLSTMECYTEEKANKIK 707
Query: 64 QNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQRE 102
+ R+ ++ D+Q LQ A + +H R + Q +RE
Sbjct: 708 ADYEKRLREMNRDLQKLQAAQK--EHARLLKNQSRYERE 744
Score = 33.1 bits (74), Expect = 0.18
Identities = 20/103 (19%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 KQVHEIQSCMGRLETADKQSVHIVENEIQ-----ASIDQIFSRLERLEILSSKEPPNKRQ 64
K++ E+ + +L+ A K+ +++N+ + + + +++ ++ K+ ++Q
Sbjct: 712 KRLREMNRDLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMKKAKVALMKQMREEQQ 771
Query: 65 NARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSR 107
RL + ++ L+ R + + A E Q+RQ+E +L R
Sbjct: 772 RRRLVETKRNREIAQLKKEQRRQEFQIRALESQKRQQEMVLRR 814
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 32.7 bits (73), Expect = 0.23
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 14 EIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSK---------------- 57
EI + ++++ +++ + + N+ + ID++ ++ ++L +K
Sbjct: 168 EIDPEIQKVKSREREQIKSLNNQFASFIDKVRFLEQQNQVLQTKWELLQQVDTSTRTHNL 227
Query: 58 EPPNKR--QNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTND 113
EP + N R RVDQLK D L + L+N Q + + + +E+ RT N+
Sbjct: 228 EPYFESFINNLRRRVDQLKSDQSRLDSELKNMQDM--VEDYRNKYEDEINKRTNAENE 283
>gi|19923559 EMSY protein [Homo sapiens]
Length = 1322
Score = 32.7 bits (73), Expect = 0.23
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 3 PLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNK 62
P +QT QV +Q +T KQ++H+ +++Q + Q + +L I K P +
Sbjct: 957 PPLEQTQLQVKTLQC----FQTKQKQTIHLQADQLQHKLPQ----MPQLSIRHQKLTPLQ 1008
Query: 63 RQNARLRVDQLKYDVQHLQ 81
++ A Q K DVQH Q
Sbjct: 1009 QEQA-----QPKPDVQHTQ 1022
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 32.7 bits (73), Expect = 0.23
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 56 SKEPPNKRQNAR--LRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTND 113
SK P R+ R L+ D+L+ + Q+ AL+ + RR ++ER+RE+L +
Sbjct: 1432 SKSPGKGRKKIRKILKDDKLRTETQN---ALKEEEERRKRIAEREREREKLREVIEIEDA 1488
Query: 114 SDTTIP------MDESLQFNSSLQKVHNGM 137
S T P +DE + L +VH M
Sbjct: 1489 SPTKCPITTKLVLDEDEETKEPLVQVHRNM 1518
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 32.7 bits (73), Expect = 0.23
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 56 SKEPPNKRQNAR--LRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTND 113
SK P R+ R L+ D+L+ + Q+ AL+ + RR ++ER+RE+L +
Sbjct: 1470 SKSPGKGRKKIRKILKDDKLRTETQN---ALKEEEERRKRIAEREREREKLREVIEIEDA 1526
Query: 114 SDTTIP------MDESLQFNSSLQKVHNGM 137
S T P +DE + L +VH M
Sbjct: 1527 SPTKCPITTKLVLDEDEETKEPLVQVHRNM 1556
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,885,532
Number of Sequences: 37866
Number of extensions: 260473
Number of successful extensions: 1542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 282
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.