Guide to the Human Genome
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Search of human proteins with 16905520

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16905520 golgi SNAP receptor complex member 2 isoform B
[Homo sapiens]
         (213 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo...   423   e-119
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo...   386   e-108
gi|60499013 golgi SNAP receptor complex member 2 isoform C [Homo...   318   3e-87
gi|45505178 cancer antigen 1 [Homo sapiens]                            41   9e-04
gi|156104908 myosin heavy chain 6 [Homo sapiens]                       40   0.002
gi|239756999 PREDICTED: ankyrin repeat domain 62 [Homo sapiens]        39   0.003
gi|239751514 PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...    39   0.003
gi|239746016 PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...    39   0.003
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    38   0.007
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]                   38   0.007
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]                 38   0.007
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   38   0.007
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   38   0.007
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    38   0.007
gi|5032283 dystrophin Dp427m isoform [Homo sapiens]                    38   0.007
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s...    36   0.028
gi|7662230 ring finger protein 40 [Homo sapiens]                       36   0.028
gi|7705415 hook homolog 1 [Homo sapiens]                               35   0.036
gi|38569484 kinesin family member 21A [Homo sapiens]                   35   0.036
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    35   0.036
gi|46852390 coiled-coil domain containing 6 [Homo sapiens]             35   0.062
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]                     34   0.11 
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]                     34   0.11 
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             34   0.11 
gi|113374156 SNARE Vti1a-beta protein [Homo sapiens]                   33   0.14 
gi|83716024 kinesin family member 21B [Homo sapiens]                   33   0.18 
gi|119395750 keratin 1 [Homo sapiens]                                  33   0.24 
gi|19923559 EMSY protein [Homo sapiens]                                33   0.24 
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    33   0.24 
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    33   0.24 

>gi|16905520 golgi SNAP receptor complex member 2 isoform B [Homo
           sapiens]
          Length = 213

 Score =  423 bits (1087), Expect = e-119
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
           MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
Sbjct: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60

Query: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
           NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
Sbjct: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120

Query: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180
           DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
Sbjct: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180

Query: 181 LIEKRAFQDKYFMIGTQGSCQTAHFGGRSAGSS 213
           LIEKRAFQDKYFMIGTQGSCQTAHFGGRSAGSS
Sbjct: 181 LIEKRAFQDKYFMIGTQGSCQTAHFGGRSAGSS 213


>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
           sapiens]
          Length = 212

 Score =  386 bits (991), Expect = e-108
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
           MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
Sbjct: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60

Query: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
           NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
Sbjct: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120

Query: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180
           DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
Sbjct: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 180

Query: 181 LIEKRAFQDKYFMIG 195
           LIEKRAFQDKYFMIG
Sbjct: 181 LIEKRAFQDKYFMIG 195


>gi|60499013 golgi SNAP receptor complex member 2 isoform C [Homo
           sapiens]
          Length = 195

 Score =  318 bits (814), Expect = 3e-87
 Identities = 166/187 (88%), Positives = 170/187 (90%), Gaps = 5/187 (2%)

Query: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
           MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
Sbjct: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60

Query: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120
           NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
Sbjct: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 120

Query: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLK-----GTQKKILDIANMLGLS 175
           DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLK     G ++K    + +   S
Sbjct: 121 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKVGSLLGDREKASCFSLIQQFS 180

Query: 176 NTVMRLI 182
           N V  LI
Sbjct: 181 NCVYILI 187


>gi|45505178 cancer antigen 1 [Homo sapiens]
          Length = 641

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 60
           MD    +  ++V  +Q     LE A   ++ +++ E +A   +  S  E  + L  KE  
Sbjct: 305 MDKTLSKKEEEVERLQQLKKELEKATASALDLLKREKEAQEQEFLSLQEEFQKLE-KENL 363

Query: 61  NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQ---ERQREELLSRTFTTNDSDTT 117
            +RQ  + R+++L   V++LQ    N + +    +QQ    +     L +    ++    
Sbjct: 364 EERQKLKSRLEKLLTQVRNLQFMSENERTKNIKLQQQINEVKNENAKLKQQVARSEEQNY 423

Query: 118 IPMDESLQFNSSLQKV 133
           +P  E+ Q    L++V
Sbjct: 424 VPKFETAQLKDQLEEV 439


>gi|156104908 myosin heavy chain 6 [Homo sapiens]
          Length = 1939

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 31/223 (13%)

Query: 1    MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQ--ASIDQIFSRLERLEILSSKE 58
            M  L Q+ +    ++Q+    L  A+++   +++N+IQ  A + ++  RLE  E ++++ 
Sbjct: 879  MVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAEL 938

Query: 59   PPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQER-----------------QR 101
               KR+       +LK D+  L+  L   +  +HA E + +                 + 
Sbjct: 939  TAKKRK-LEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKE 997

Query: 102  EELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGT 161
            ++ L         D  +  D+    + S  K+   +DDL       L+  +  R+ L+  
Sbjct: 998  KKALQEAHQQALDDLQVEEDKVNSLSKSKVKLEQQVDDL----EGSLEQEKKVRMDLERA 1053

Query: 162  QKKI-----LDIANMLGLSNTVMRLIEKRAFQDKYFMIGTQGS 199
            ++K+     L   +++ L N  ++L EK   + K F I  Q S
Sbjct: 1054 KRKLEGDLKLTQESIMDLENDKLQLEEK--LKKKEFDINQQNS 1094



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 6    QQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKE-PPNKRQ 64
            ++   ++ E++  +    TA +  V  + +++   +++I  RLE     +S +   NK++
Sbjct: 1111 KENQARIEELEEELEAERTA-RAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKR 1169

Query: 65   NA---RLRVDQLKYDVQHLQTALRNFQHRRHARE-----------QQERQREELLSRTFT 110
             A   ++R D  +  +QH  TA      ++HA             Q+ +Q+ E     F 
Sbjct: 1170 EAEFQKMRRDLEEATLQHEATAAA--LRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFK 1227

Query: 111  TNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
                D T  M++ ++  ++L+KV   ++D
Sbjct: 1228 LELDDVTSNMEQIIKAKANLEKVSRTLED 1256


>gi|239756999 PREDICTED: ankyrin repeat domain 62 [Homo sapiens]
          Length = 917

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 28  QSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR--VDQLKYDVQHLQTALR 85
           +S+ +    ++++ +Q F   ER   L  +    + + ARLR  +D +K+  Q+ +T  +
Sbjct: 531 KSLEVELKTVRSNSNQNFHTHERERDLWQENHLMRDEIARLRLEIDTIKH--QNQETENK 588

Query: 86  NFQHRRHAREQQE------RQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
            F+     +E  E      ++ EE L++T T    +  + MDE+   NS LQK    M  
Sbjct: 589 YFKDIEIIKENNEDLEKTLKRNEETLTKTITRYSKELNVLMDENTMLNSELQKEKQSMSR 648

Query: 140 L 140
           L
Sbjct: 649 L 649


>gi|239751514 PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo
           sapiens]
          Length = 917

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 28  QSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR--VDQLKYDVQHLQTALR 85
           +S+ +    ++++ +Q F   ER   L  +    + + ARLR  +D +K+  Q+ +T  +
Sbjct: 531 KSLEVELKTVRSNSNQNFHTHERERDLWQENHLMRDEIARLRLEIDTIKH--QNQETENK 588

Query: 86  NFQHRRHAREQQE------RQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
            F+     +E  E      ++ EE L++T T    +  + MDE+   NS LQK    M  
Sbjct: 589 YFKDIEIIKENNEDLEKTLKRNEETLTKTITRYSKELNVLMDENTMLNSELQKEKQSMSR 648

Query: 140 L 140
           L
Sbjct: 649 L 649


>gi|239746016 PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo
           sapiens]
          Length = 917

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 28  QSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR--VDQLKYDVQHLQTALR 85
           +S+ +    ++++ +Q F   ER   L  +    + + ARLR  +D +K+  Q+ +T  +
Sbjct: 531 KSLEVELKTVRSNSNQNFHTHERERDLWQENHLMRDEIARLRLEIDTIKH--QNQETENK 588

Query: 86  NFQHRRHAREQQE------RQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
            F+     +E  E      ++ EE L++T T    +  + MDE+   NS LQK    M  
Sbjct: 589 YFKDIEIIKENNEDLEKTLKRNEEALTKTITRYSKELNVLMDENTMLNSELQKEKQSMSR 648

Query: 140 L 140
           L
Sbjct: 649 L 649


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22   LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
            +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 1673 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1729

Query: 82   TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
             A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 1730 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1789

Query: 138  DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
            +  I  G N+   D  +      +GT K++L
Sbjct: 1790 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1820


>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
          Length = 2341

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22  LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
           +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 337 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 393

Query: 82  TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
            A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 394 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 453

Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
           +  I  G N+   D  +      +GT K++L
Sbjct: 454 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 484


>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
          Length = 2344

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22  LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
           +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 340 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 396

Query: 82  TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
            A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 397 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 456

Query: 138 DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
           +  I  G N+   D  +      +GT K++L
Sbjct: 457 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 487


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22   LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
            +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 1558 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1614

Query: 82   TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
             A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 1615 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1674

Query: 138  DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
            +  I  G N+   D  +      +GT K++L
Sbjct: 1675 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1705


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22   LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
            +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 1677 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1733

Query: 82   TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
             A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 1734 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1793

Query: 138  DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
            +  I  G N+   D  +      +GT K++L
Sbjct: 1794 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1824


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22   LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
            +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 1558 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1614

Query: 82   TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
             A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 1615 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1674

Query: 138  DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
            +  I  G N+   D  +      +GT K++L
Sbjct: 1675 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1705


>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 22   LETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQ 81
            +ET D+   HI +  IQA  D +    E+ +    KE   KR  A L   + K D    Q
Sbjct: 1681 METFDQNVDHITKWIIQA--DTLLDESEKKKP-QQKEDVLKRLKAELNDIRPKVDSTRDQ 1737

Query: 82   TALRNFQHRRHAREQQERQREELLSR----TFTTNDSDTTIPMDESLQFNSSLQKVHNGM 137
             A        H R+  E Q  EL  R    +        +IP+ E  QFNS +QK+   +
Sbjct: 1738 AANLMANRGDHCRKLVEPQISELNHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPL 1797

Query: 138  DDLILDGHNIL--DGLRTQRLTLKGTQKKIL 166
            +  I  G N+   D  +      +GT K++L
Sbjct: 1798 EAEIQQGVNLKEEDFNKDMNEDNEGTVKELL 1828


>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
           sapiens]
          Length = 1935

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 1   MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQ--ASIDQIFSRLERLEILSSKE 58
           M  L Q+ +    ++Q+    L  A+++   +++N+IQ  A + ++  RLE  E ++++ 
Sbjct: 877 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAEL 936

Query: 59  PPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREE 103
              KR+       +LK D+  L+  L   +  +HA E + +   E
Sbjct: 937 TAKKRK-LEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTE 980



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 23/157 (14%)

Query: 4    LFQQTHKQVHEIQSCMGRLET------ADKQSVHIVENEIQASIDQIFSRLERLEILSSK 57
            L  Q  K++ E+Q+ +  LE         +  V  + +++   +++I  RLE     +S 
Sbjct: 1100 LGSQLQKKLKELQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSV 1159

Query: 58   E-PPNKRQNA---RLRVDQLKYDVQHLQTALRNFQHRRHARE-----------QQERQRE 102
            +   NK++ A   ++R D  +  +QH  TA      ++HA             Q+ +Q+ 
Sbjct: 1160 QIEMNKKREAEFQKMRRDLEEATLQHEATAAA--LRKKHADSVAELGEQIDNLQRVKQKL 1217

Query: 103  ELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDD 139
            E     F     D T  M++ ++  ++L+K+   ++D
Sbjct: 1218 EKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLED 1254


>gi|7662230 ring finger protein 40 [Homo sapiens]
          Length = 1001

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 21/167 (12%)

Query: 23  ETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPN-KRQNARLRVDQLKYDVQHLQ 81
           E  DK  +   E + +A +D++ SR+  LE    +E      ++A  R+ Q +  ++HLQ
Sbjct: 682 EQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQ 741

Query: 82  TALRNFQHRRHAR-----------EQQERQREELLSRTFTTNDSDTTIPMDESLQFNSSL 130
             L   +    A            E  + Q   LL +    +D++  + M E ++ N   
Sbjct: 742 RKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKL-MSERIKANQIH 800

Query: 131 QKVHNGMDDLILDGHNILDGLRT----QRLTLKGTQKKILDIANMLG 173
           + +    D+L   G  +L GL++    Q LT++  ++K   +   LG
Sbjct: 801 KLLREEKDEL---GEQVL-GLKSQVDAQLLTVQKLEEKERALQGSLG 843


>gi|7705415 hook homolog 1 [Homo sapiens]
          Length = 728

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 15  IQSCMGRLETADKQSVHI-----VENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLR 69
           +Q  +G     +K+  HI     +E  +Q  +      L   EILSS  PPN       +
Sbjct: 121 LQLILGCAINCEKKQEHIQNIMTLEESVQHVVMTAIQELMSKEILSS--PPNDAVGELEQ 178

Query: 70  VDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNSS 129
             QLK  ++ LQ AL        A +++ RQR E L    TT   +    + E+   N  
Sbjct: 179 --QLKRALEELQEAL--------AEKEELRQRCEELDMQVTTLQDEKNSLVSENEMMNEK 228

Query: 130 LQKVHNGMDD 139
           L ++    DD
Sbjct: 229 LDQLDGSFDD 238


>gi|38569484 kinesin family member 21A [Homo sapiens]
          Length = 1661

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 21/103 (20%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 10  KQVHEIQSCMGRLETADKQSVHIVENEIQ-----ASIDQIFSRLERLEILSSKEPPNKRQ 64
           K++  +   + RL+ A K+   +++N+ Q       + Q    +++ ++   K+   +++
Sbjct: 710 KKLQAMNKELQRLQAAQKEHARLLKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKEEQE 769

Query: 65  NARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSR 107
            ARL   +   ++  L+   R   H+    E Q+R +E +L R
Sbjct: 770 KARLTESRRNREIAQLKKDQRKRDHQLRLLEAQKRNQEVVLRR 812


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal
           [Homo sapiens]
          Length = 1937

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 14  EIQSCMGRLETADKQSVHIVENEIQ--ASIDQIFSRLERLEILSSKEPPNKRQNARLRVD 71
           ++QS    L  A+++   +++N+IQ  A I ++  R E  E ++++    KR+       
Sbjct: 893 QVQSEADSLADAEERCEQLIKNKIQLEAKIKEVTERAEEEEEINAELTAKKRK-LEDECS 951

Query: 72  QLKYDVQHLQTALRNFQHRRHAREQQERQREE 103
           +LK D+  L+  L   +  +HA E + +   E
Sbjct: 952 ELKKDIDDLELTLAKVEKEKHATENKVKNLTE 983


>gi|46852390 coiled-coil domain containing 6 [Homo sapiens]
          Length = 474

 Score = 34.7 bits (78), Expect = 0.062
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 42/135 (31%)

Query: 33  VENEIQASIDQIFSRLERLE----ILSSK------EPPNKR---------QNARLRVDQL 73
           +E E +A +++++ R+++LE    IL  K       PP+ R         +N    +  L
Sbjct: 206 LEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFL 265

Query: 74  KYDVQHLQTALR--NFQH----------RRHARE---------QQERQREELLSRTFTTN 112
           K +V+ L+  LR    QH           RH RE         Q+E +R E L R  +  
Sbjct: 266 KNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLS-- 323

Query: 113 DSDTTIPMDESLQFN 127
           +S++++ MD+   FN
Sbjct: 324 ESESSLEMDDERYFN 338


>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
          Length = 1173

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 25/146 (17%)

Query: 6   QQTHKQVHEIQSCMGRLETADK---------QSVHIVENEIQASIDQIFSRLERLEILSS 56
           Q+  ++ H++ +   ++E   K         Q +    NE+++   QI + L+R + L  
Sbjct: 691 QEKQEKQHKLDTVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEE 750

Query: 57  K--EPPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDS 114
           +  E   + Q+    +   K  V  L+T L  FQ          +++EEL+++  T+N  
Sbjct: 751 QTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQ----------QEKEELINKKNTSNK- 799

Query: 115 DTTIPMDESLQFNSSLQKVHNGMDDL 140
              I  D+       ++ +H  M D+
Sbjct: 800 ---IAQDKLNDIKEKVKNIHGYMKDI 822


>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
          Length = 1312

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 25/146 (17%)

Query: 6   QQTHKQVHEIQSCMGRLETADK---------QSVHIVENEIQASIDQIFSRLERLEILSS 56
           Q+  ++ H++ +   ++E   K         Q +    NE+++   QI + L+R + L  
Sbjct: 830 QEKQEKQHKLDTVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEE 889

Query: 57  K--EPPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDS 114
           +  E   + Q+    +   K  V  L+T L  FQ          +++EEL+++  T+N  
Sbjct: 890 QTVELSTEVQSLYREIKDAKEQVSPLETTLEKFQ----------QEKEELINKKNTSNK- 938

Query: 115 DTTIPMDESLQFNSSLQKVHNGMDDL 140
              I  D+       ++ +H  M D+
Sbjct: 939 ---IAQDKLNDIKEKVKNIHGYMKDI 961


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 2   DPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRL-ERLEILSSKEPP 60
           D +++Q  +Q  EI + + R     ++    +E + +A+  +   RL E+L IL  +  P
Sbjct: 442 DEIWKQRRRQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKRLDEKLGILEKQPSP 501

Query: 61  NK-RQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQRE 102
            + R+  R +  + + +++  Q   R  +  +    QQE+++E
Sbjct: 502 EEIREREREKEREREKELEKEQEQEREKEREKDRERQQEKEKE 544


>gi|113374156 SNARE Vti1a-beta protein [Homo sapiens]
          Length = 217

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 32/184 (17%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 14  EIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQL 73
           EI S + R+          +   ++  +++    LE++++   + PP  R     R+   
Sbjct: 18  EITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSY 77

Query: 74  KYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKV 133
           K ++  L+T   +F+  R A    +  R ELL     ++++     +D + +   S +++
Sbjct: 78  KQEMGKLET---DFKRSRIA--YSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRL 132

Query: 134 HNGMDDLILD---GHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDK 190
             G    +     G  +L+ L   R  ++  ++++ +    LG S+ ++  + +R  Q++
Sbjct: 133 EAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNR 192

Query: 191 YFMI 194
             ++
Sbjct: 193 ILLV 196


>gi|83716024 kinesin family member 21B [Homo sapiens]
          Length = 1624

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 10  KQVHEIQSCMGRLETADKQ---SVHIVENEI---QASIDQIFSRLERLEILSSKEPPNKR 63
           K + E+++   RL+T   Q    + +++N+I   Q   D++   L  +E  + ++    +
Sbjct: 648 KLIDELENSQRRLQTLKHQYEEKLILLQNKIRDTQLERDRVLQNLSTMECYTEEKANKIK 707

Query: 64  QNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQRE 102
            +   R+ ++  D+Q LQ A +  +H R  + Q   +RE
Sbjct: 708 ADYEKRLREMNRDLQKLQAAQK--EHARLLKNQSRYERE 744



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 20/103 (19%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 10  KQVHEIQSCMGRLETADKQSVHIVENEIQ-----ASIDQIFSRLERLEILSSKEPPNKRQ 64
           K++ E+   + +L+ A K+   +++N+ +       +    + +++ ++   K+   ++Q
Sbjct: 712 KRLREMNRDLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMKKAKVALMKQMREEQQ 771

Query: 65  NARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSR 107
             RL   +   ++  L+   R  + +  A E Q+RQ+E +L R
Sbjct: 772 RRRLVETKRNREIAQLKKEQRRQEFQIRALESQKRQQEMVLRR 814


>gi|119395750 keratin 1 [Homo sapiens]
          Length = 644

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 20/118 (16%)

Query: 14  EIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSK---------------- 57
           EI   + ++++ +++ +  + N+  + ID++    ++ ++L +K                
Sbjct: 168 EIDPEIQKVKSREREQIKSLNNQFASFIDKVRFLEQQNQVLQTKWELLQQVDTSTRTHNL 227

Query: 58  EPPNKR--QNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTND 113
           EP  +    N R RVDQLK D   L + L+N Q      + + +  +E+  RT   N+
Sbjct: 228 EPYFESFINNLRRRVDQLKSDQSRLDSELKNMQDM--VEDYRNKYEDEINKRTNAENE 283


>gi|19923559 EMSY protein [Homo sapiens]
          Length = 1322

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)

Query: 3    PLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNK 62
            P  +QT  QV  +Q      +T  KQ++H+  +++Q  + Q    + +L I   K  P +
Sbjct: 957  PPLEQTQLQVKTLQC----FQTKQKQTIHLQADQLQHKLPQ----MPQLSIRHQKLTPLQ 1008

Query: 63   RQNARLRVDQLKYDVQHLQ 81
            ++ A     Q K DVQH Q
Sbjct: 1009 QEQA-----QPKPDVQHTQ 1022


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 56   SKEPPNKRQNAR--LRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTND 113
            SK P   R+  R  L+ D+L+ + Q+   AL+  + RR    ++ER+RE+L       + 
Sbjct: 1432 SKSPGKGRKKIRKILKDDKLRTETQN---ALKEEEERRKRIAEREREREKLREVIEIEDA 1488

Query: 114  SDTTIP------MDESLQFNSSLQKVHNGM 137
            S T  P      +DE  +    L +VH  M
Sbjct: 1489 SPTKCPITTKLVLDEDEETKEPLVQVHRNM 1518


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 56   SKEPPNKRQNAR--LRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTND 113
            SK P   R+  R  L+ D+L+ + Q+   AL+  + RR    ++ER+RE+L       + 
Sbjct: 1470 SKSPGKGRKKIRKILKDDKLRTETQN---ALKEEEERRKRIAEREREREKLREVIEIEDA 1526

Query: 114  SDTTIP------MDESLQFNSSLQKVHNGM 137
            S T  P      +DE  +    L +VH  M
Sbjct: 1527 SPTKCPITTKLVLDEDEETKEPLVQVHRNM 1556


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,116,456
Number of Sequences: 37866
Number of extensions: 268678
Number of successful extensions: 1534
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 284
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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