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Search of human proteins with 167900484
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|167900484 pentraxin 3 [Homo sapiens]
(381 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|167900484 pentraxin 3 [Homo sapiens] 776 0.0
gi|28195384 neuronal pentraxin II [Homo sapiens] 105 9e-23
gi|55770878 neuronal pentraxin I precursor [Homo sapiens] 101 1e-21
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 96 5e-20
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 89 9e-18
gi|148886654 polydom [Homo sapiens] 85 9e-17
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 72 1e-12
gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens] 69 7e-12
gi|4502133 serum amyloid P component precursor [Homo sapiens] 62 1e-09
gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens] 50 4e-06
gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens] 50 4e-06
gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo sap... 50 4e-06
gi|45433552 G protein-coupled receptor 133 [Homo sapiens] 42 0.001
gi|74048357 G protein-coupled receptor 126 alpha 1 precursor [Ho... 39 0.010
gi|50355941 G protein-coupled receptor 126 beta 1 precursor [Hom... 39 0.010
gi|74048422 G protein-coupled receptor 126 alpha 2 precursor [Ho... 39 0.010
gi|74048403 G protein-coupled receptor 126 beta 2 precursor [Hom... 39 0.010
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 37 0.030
gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 37 0.039
gi|21735548 centrosomal protein 2 [Homo sapiens] 35 0.15
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 35 0.15
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 35 0.15
gi|7657253 T-complex protein 1 [Homo sapiens] 34 0.19
gi|215982794 myosin VA isoform 2 [Homo sapiens] 33 0.33
gi|215982791 myosin VA isoform 1 [Homo sapiens] 33 0.33
gi|219842266 usherin isoform B [Homo sapiens] 33 0.43
gi|219842259 usherin isoform A [Homo sapiens] 33 0.43
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 33 0.56
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 33 0.56
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 33 0.56
>gi|167900484 pentraxin 3 [Homo sapiens]
Length = 381
Score = 776 bits (2005), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 1 MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF 60
MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF
Sbjct: 1 MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF 60
Query: 61 IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL 120
IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL
Sbjct: 61 IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL 120
Query: 121 LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE 180
LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE
Sbjct: 121 LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE 180
Query: 181 TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL 240
TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL
Sbjct: 181 TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL 240
Query: 241 SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH 300
SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH
Sbjct: 241 SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH 300
Query: 301 IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR 360
IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR
Sbjct: 301 IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR 360
Query: 361 GNIVGWGVTEIQPHGGAQYVS 381
GNIVGWGVTEIQPHGGAQYVS
Sbjct: 361 GNIVGWGVTEIQPHGGAQYVS 381
>gi|28195384 neuronal pentraxin II [Homo sapiens]
Length = 431
Score = 105 bits (261), Expect = 9e-23
Identities = 89/311 (28%), Positives = 137/311 (44%), Gaps = 35/311 (11%)
Query: 81 LRGELQRLREELGRLAESL-ARPCAPGAPAEAR--LTSALDELLQATRDAGRRLARME-- 135
L LQ L++ L L L A G P + R L L EL R R++A +E
Sbjct: 127 LSRSLQTLKDRLESLEHQLRANVSNAGLPGDFREVLQQRLGEL---ERQLLRKVAELEDE 183
Query: 136 --------GAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCETAILFPM 187
A Q+ E AL + EL + + + + + P+
Sbjct: 184 KSLLHNETSAHRQKTESTLNALLQRVTELERGNSAFKSPDAFK------------VSLPL 231
Query: 188 RSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLY-LSYQSIV 246
R+ ++G + P L +F+ C+W++++ FSY EI L I
Sbjct: 232 RTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIE 290
Query: 247 FVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGG 306
++ + +L VS G+W H+C TW + +G+ + +GE T +A H + GG
Sbjct: 291 LLINDKVAQL--PLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGG 348
Query: 307 ILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGW 366
+L +GQE++ VGG FD T AF G L+ FNIWD VL +EI S ++ GNI+ W
Sbjct: 349 VLILGQEQD--TVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIANC-STNMPGNIIPW 405
Query: 367 GVTEIQPHGGA 377
+ GGA
Sbjct: 406 VDNNVDVFGGA 416
>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
Length = 432
Score = 101 bits (251), Expect = 1e-21
Identities = 75/272 (27%), Positives = 131/272 (48%), Gaps = 18/272 (6%)
Query: 114 TSALDELLQATRDAGRR--LARM----EGAEAQRPEEAGRA-LAAVLEELRQTRADLHAV 166
T++L +LLQ+ D R L+R+ EG R + R + L L Q ++L
Sbjct: 159 TNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKG 218
Query: 167 QGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFS 226
Q + P G + + FP+R+ ++ V P + +F+ C+W+K++ FS
Sbjct: 219 Q----KDNRP-GDKFQLTFPLRTNYMYAKVKKSLP-EMYAFTVCMWLKSSATPGVGTPFS 272
Query: 227 YGTKRNPYEIQLY-LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWV 285
Y E+ L + ++ + KL +++ G+W H+C TW + +G+ +
Sbjct: 273 YAVPGQANELVLIEWGNNPMEILINDKVAKL--PFVINDGKWHHICVTWTTRDGVWEAYQ 330
Query: 286 NGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSN 345
+G + +A H + G+L +GQE++ +GGGFD T AF G L FNIWD L+
Sbjct: 331 DGTQGGSGENLAPYHPIKPQGVLVLGQEQD--TLGGGFDATQAFVGELAHFNIWDRKLTP 388
Query: 346 EEIRETGGAESCHIRGNIVGWGVTEIQPHGGA 377
E+ + + GN++ W + I+ +GGA
Sbjct: 389 GEVYNLATCSTKALSGNVIAWAESHIEIYGGA 420
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 95.9 bits (237), Expect = 5e-20
Identities = 94/327 (28%), Positives = 148/327 (45%), Gaps = 50/327 (15%)
Query: 72 MLLQATDDV--LRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQATRDAGR 129
++L+ D V LR + RL +EL A P AP + L S +D+L G+
Sbjct: 189 LILELEDAVRALRDRIDRLEQELPARVNLSAAP-APVSAVPTGLHSKMDQL------EGQ 241
Query: 130 RLARMEGAEAQRPEEAGRALAAVLEELRQ-TRADLHAVQGWAARSWLPAGCET------- 181
LA++ E +R AL+ RQ +L +QG A L G
Sbjct: 242 LLAQVLALEKERV-----ALSHSSRRQRQEVEKELDVLQGRVAE--LEHGSSAYSPPDAF 294
Query: 182 AILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRN-PYEIQLYL 240
I P+R+ ++ V P L +F+AC+W+++ S GT + P+ +
Sbjct: 295 KISIPIRNNYMYARVRKALP-ELYAFTACMWLRSR---------SSGTGQGTPFSYSVPG 344
Query: 241 SYQSIVFVVGGEE------NKLVAEAMVSL--GRWTHLCGTWNSEEGLTSLWVNGELAAT 292
IV + G E N VA+ +SL W H+C W + +GL S + +GEL +
Sbjct: 345 QANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGELQGS 404
Query: 293 TVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETG 352
+A H + GIL +GQE++ +GG FD T AF G + FN+WD L+ ++
Sbjct: 405 GENLAAWHPIKPHGILILGQEQD--TLGGRFDATQAFVGDIAQFNLWDHALTPAQVL--- 459
Query: 353 GAESC--HIRGNIVGWGVTEIQPHGGA 377
G +C + GN++ W ++ GGA
Sbjct: 460 GIANCTAPLLGNVLPWEDKLVEAFGGA 486
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 88.6 bits (218), Expect = 9e-18
Identities = 95/316 (30%), Positives = 139/316 (43%), Gaps = 38/316 (12%)
Query: 64 ENSQMR--ERMLLQATDDVLRGELQRLR----EELGRLAESLAR-PCA-PGA----PAEA 111
E SQ R ER +A D L+ L RL + RLA R P A PG PA
Sbjct: 126 ERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALV 185
Query: 112 RLTSALDELLQATRDAGRRLARMEGAEAQR--PEEAGRALAAVLEELRQTRAD-LHAVQG 168
+ +EL + R + A R P+++ +A L+ R+ A H V
Sbjct: 186 PTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDS----SAPLQGRREPPASGSHRVLS 241
Query: 169 WAA------RSWLP------AGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKAT 216
A ++W P G ++FP S + + P L + S C WV+
Sbjct: 242 GTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRTA 301
Query: 217 DVLNKTILFSYGTKRNPYEIQLY----LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCG 272
T+L SY T+ N ++ L+ L SI FV+G + + ++ G+W H+C
Sbjct: 302 SGRLGTLL-SYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICV 360
Query: 273 TWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGR 332
W S +G L V+ L AT G+ +P GG L +GQE++ VGGGFD + AF G
Sbjct: 361 IWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDS--VGGGFDSSEAFVGS 418
Query: 333 LTGFNIWDSVLSNEEI 348
++G IWD L E+
Sbjct: 419 MSGLAIWDRALVPGEV 434
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 85.1 bits (209), Expect = 9e-17
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 204 LESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYLSYQSIVFVVGGEENKLVAEAMVS 263
L + + W+K++D +N SY L Y V V G E K+ V+
Sbjct: 1448 LHALTCTFWMKSSDDMNYGTPISYAVDNGSDNTLLLTDYNGWVLYVNGRE-KITNCPSVN 1506
Query: 264 LGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGF 323
GRW H+ TW S G+ ++++G+L+ ++ G +P GG L +GQE++ G GF
Sbjct: 1507 DGRWHHIAITWTSANGIWKVYIDGKLSDGGAGLSVGLPIPGGGALVLGQEQDK--KGEGF 1564
Query: 324 DETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCH---IRGNIVGW 366
+F G ++ N+WD VLS ++++ A SC +GN++ W
Sbjct: 1565 SPAESFVGSISQLNLWDYVLSPQQVKSL--ATSCPEELSKGNVLAW 1608
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 248 VVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGI 307
VV G+ +A A + GRW H+C TW G +L+ +G A + GH VP GGI
Sbjct: 190 VVRGQHAPFLA-AFRADGRWHHVCATWEQRGGRWALFSDGRRRAGARGLGAGHPVPSGGI 248
Query: 308 LQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEI 348
L +GQ+++ +GGGF A SG LT F++W LS ++
Sbjct: 249 LVLGQDQDS--LGGGFSVRHALSGNLTDFHLWARALSPAQL 287
>gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]
Length = 224
Score = 68.9 bits (167), Expect = 7e-12
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 17/200 (8%)
Query: 182 AILFPMRSKKIFGSVHPVRPMRLESFSACI--WVKATDVLNKTILFSYGTKRNPYEIQLY 239
A +FP S + S+ L++F+ C+ + + + +I FSY TKR EI ++
Sbjct: 26 AFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSI-FSYATKRQDNEILIF 84
Query: 240 LSYQ-SIVFVVGGEENKL-VAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMA 297
S F VGG E V E V+ H+C +W S G+ WV+G+ +
Sbjct: 85 WSKDIGYSFTVGGSEILFEVPEVTVAP---VHICTSWESASGIVEFWVDGK-PRVRKSLK 140
Query: 298 TGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRE--TGGAE 355
G+ V + +GQE++ GG F+ + + G + N+WD VLS +EI GG
Sbjct: 141 KGYTVGAEASIILGQEQDS--FGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPF 198
Query: 356 SCHIRGNIVGWGVTEIQPHG 375
S N++ W + + G
Sbjct: 199 S----PNVLNWRALKYEVQG 214
>gi|4502133 serum amyloid P component precursor [Homo sapiens]
Length = 223
Score = 61.6 bits (148), Expect = 1e-09
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%)
Query: 184 LFPMRSKKIFGSVHPVRPMR--LESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYLS 241
+FP S + V+ + P+ L++F+ C + D+ LFSY T+ E+ +Y
Sbjct: 29 VFPRES--VTDHVNLITPLEKPLQNFTLCFRAYS-DLSRAYSLFSYNTQGRDNELLVYKE 85
Query: 242 YQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHI 301
+ G +K+ ++ + H+C +W S G+ W+NG + G+
Sbjct: 86 RVGEYSLYIGR-HKVTSKVIEKFPAPVHICVSWESSSGIAEFWING-TPLVKKGLRQGYF 143
Query: 302 VPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRG 361
V + +GQE++ GG FD + +F G + +WDSVL E I + +
Sbjct: 144 VEAQPKIVLGQEQDS--YGGKFDRSQSFVGEIGDLYMWDSVLPPENI--LSAYQGTPLPA 199
Query: 362 NIVGWGVTEIQPHG 375
NI+ W + G
Sbjct: 200 NILDWQALNYEIRG 213
>gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 49.7 bits (117), Expect = 4e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 268 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
TH+ +W S G+ +LW NG+L + G+ V E + +GQE++ GG FDE
Sbjct: 121 THVNVSWESASGIATLWANGKLVGRK-GVWKGYSVGEEAKIILGQEQDS--FGGHFDENQ 177
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCH 358
+F G + +WD VL +E+ +SC+
Sbjct: 178 SFVGVIWDVFLWDHVLPPKEM-----CDSCY 203
>gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 49.7 bits (117), Expect = 4e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 268 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
TH+ +W S G+ +LW NG+L + G+ V E + +GQE++ GG FDE
Sbjct: 121 THVNVSWESASGIATLWANGKLVGRK-GVWKGYSVGEEAKIILGQEQDS--FGGHFDENQ 177
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCH 358
+F G + +WD VL +E+ +SC+
Sbjct: 178 SFVGVIWDVFLWDHVLPPKEM-----CDSCY 203
>gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo
sapiens]
Length = 229
Score = 49.7 bits (117), Expect = 4e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 268 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
TH+ +W S G+ +LW NG+L + G+ V E + +GQE++ GG FDE
Sbjct: 121 THVNVSWESASGIATLWANGKLVGRK-GVWKGYSVGEEAKIILGQEQDS--FGGHFDENQ 177
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCH 358
+F G + +WD VL +E+ +SC+
Sbjct: 178 SFVGVIWDVFLWDHVLPPKEM-----CDSCY 203
>gi|45433552 G protein-coupled receptor 133 [Homo sapiens]
Length = 874
Score = 41.6 bits (96), Expect = 0.001
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 267 WTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGI-LQIGQEKN--GCCVGGGF 323
WTH+ TW S+EGL ++VNG L+ + E + L IG E++ C G F
Sbjct: 167 WTHVLFTWKSKEGL-KVYVNGTLSTSDPSGKVSRDYGESNVNLVIGSEQDQAKCYENGAF 225
Query: 324 DETLAFSGRLTGFNIWDSVLSNEEI 348
DE F IW+ L+ +EI
Sbjct: 226 DE----------FIIWERALTPDEI 240
>gi|74048357 G protein-coupled receptor 126 alpha 1 precursor [Homo
sapiens]
Length = 1221
Score = 38.5 bits (88), Expect = 0.010
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 270 LCGTWNSEEGLTSLWVNGELAATTV--EMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
LC WN+ G S+ VN + TV + ++P G L +G +N E +
Sbjct: 253 LCLVWNNSLG--SIGVNFKRNYETVPCDSTISKVIPGNGKLLLGSNQN---------EIV 301
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGW 366
+ G + F +W+ ++ + + SC+++GN+V W
Sbjct: 302 SLKGDIYNFRLWNFTMNAKILSNL----SCNVKGNVVDW 336
>gi|50355941 G protein-coupled receptor 126 beta 1 precursor [Homo
sapiens]
Length = 1250
Score = 38.5 bits (88), Expect = 0.010
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 270 LCGTWNSEEGLTSLWVNGELAATTV--EMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
LC WN+ G S+ VN + TV + ++P G L +G +N E +
Sbjct: 253 LCLVWNNSLG--SIGVNFKRNYETVPCDSTISKVIPGNGKLLLGSNQN---------EIV 301
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGW 366
+ G + F +W+ ++ + + SC+++GN+V W
Sbjct: 302 SLKGDIYNFRLWNFTMNAKILSNL----SCNVKGNVVDW 336
>gi|74048422 G protein-coupled receptor 126 alpha 2 precursor [Homo
sapiens]
Length = 1193
Score = 38.5 bits (88), Expect = 0.010
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 270 LCGTWNSEEGLTSLWVNGELAATTV--EMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
LC WN+ G S+ VN + TV + ++P G L +G +N E +
Sbjct: 253 LCLVWNNSLG--SIGVNFKRNYETVPCDSTISKVIPGNGKLLLGSNQN---------EIV 301
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGW 366
+ G + F +W+ ++ + + SC+++GN+V W
Sbjct: 302 SLKGDIYNFRLWNFTMNAKILSNL----SCNVKGNVVDW 336
>gi|74048403 G protein-coupled receptor 126 beta 2 precursor [Homo
sapiens]
Length = 1222
Score = 38.5 bits (88), Expect = 0.010
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 270 LCGTWNSEEGLTSLWVNGELAATTV--EMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
LC WN+ G S+ VN + TV + ++P G L +G +N E +
Sbjct: 253 LCLVWNNSLG--SIGVNFKRNYETVPCDSTISKVIPGNGKLLLGSNQN---------EIV 301
Query: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGW 366
+ G + F +W+ ++ + + SC+++GN+V W
Sbjct: 302 SLKGDIYNFRLWNFTMNAKILSNL----SCNVKGNVVDW 336
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 37.0 bits (84), Expect = 0.030
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 82 RGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQR 141
+ +L+RLR+EL AE L A EA + E + A R E AEA R
Sbjct: 264 KAQLRRLRQELEEKAELLLDSQAEVQGLEAEIRRLRQEAQALSGQAKRAELYREEAEALR 323
Query: 142 PEEAGRALAAVLEELRQTRADLHAVQGWAAR 172
E AGR L + EELR+ R L A + + ++
Sbjct: 324 -ERAGR-LPRLQEELRRCRERLQAAEAYKSQ 352
Score = 33.5 bits (75), Expect = 0.33
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 30/111 (27%)
Query: 69 RERMLLQATDDVLRGELQRLREELGRLAE-----------SLARPCAPGAPAEARLTSAL 117
RE +LL+ EL LR ++ +LAE SL P PG+P EA L A
Sbjct: 389 RENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPP--PGSPGEAPLAGAA 446
Query: 118 DELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQG 168
L R+A EAGR L + E R+ R L +QG
Sbjct: 447 PSLQDEVREA----------------EAGR-LRTLERENRELRGLLQVLQG 480
>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
Length = 3080
Score = 36.6 bits (83), Expect = 0.039
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 18/169 (10%)
Query: 204 LESFSACI-WVKATDVLNKTILFSYGTK-----RNPYEIQLYLSYQSIVFVVGGEENKLV 257
L F+ACI V D + FSY T R ++ L +Q ++ G+ +
Sbjct: 52 LSRFTACIDLVFMDDNSRYWMAFSYITNNALLGREDIDLGLAGDHQQLILYRLGKTFSI- 110
Query: 258 AEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGC 317
++ +W +C W+ +G L++N E + ++ P G + KN
Sbjct: 111 -RHHLASFQWHTICLIWDGVKGKLELFLNKERILEVTDQPH-NLTPHGTLFLGHFLKNES 168
Query: 318 CVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGW 366
+ F G L F +WD +L NEE + + GNIV W
Sbjct: 169 SEVKSMMRS--FPGSLYYFQLWDHILENEEFMKC-------LDGNIVSW 208
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 34.7 bits (78), Expect = 0.15
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 51 QEHSEWDKLFIMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAE 110
Q+H E + LE E +QA ++VL G+L+ E + +L + CA A
Sbjct: 1862 QDHKEQAR---RLEEELAVEGRRVQALEEVL-GDLRAESREQEKALLALQQQCAEQAQEH 1917
Query: 111 ARLTSAL-DELLQAT-----RDAGRRLARMEGAEAQRPEEAGRALAAVLEE 155
T AL D LQA RD R E ++ EEA RA A L+E
Sbjct: 1918 EVETRALQDSWLQAQAVLKERDQELEALRAESQSSRHQEEAARARAEALQE 1968
Score = 33.5 bits (75), Expect = 0.33
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 65 NSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQAT 124
+S +ER LLQ + LR +L+ L +E RL G A+ + +EL A
Sbjct: 459 DSLSKERELLQKAREELRQQLEVLEQEAWRLRRVNVELQLQGDSAQGQKEEQQEELHLAV 518
Query: 125 RDAGRRLARMEGAEAQRPEEAGR--ALAAVLEE-------LRQTRADLHAVQGWAARS 173
R+ R + G EA++ E L LE LRQ + ++ A A +S
Sbjct: 519 RERERLQEMLMGLEAKQSESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQS 576
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 34.7 bits (78), Expect = 0.15
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 81 LRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQ 140
+ G+L L +LG A A A RL A + QA RD +RLA +AQ
Sbjct: 1667 MEGDLNDLELQLGHATRQ-----ATEAQAATRLMQAQLKEEQAGRDEEQRLAAELHEQAQ 1721
Query: 141 RPEEAGRALAAVLEELR 157
E LAA LEELR
Sbjct: 1722 ALERRASLLAAELEELR 1738
Score = 30.0 bits (66), Expect = 3.6
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 83 GELQRLREELGRLAESLARPCAPGAPA----------EARLTSALDELLQATRDAGRRLA 132
GEL RL EE L L+R A A + E++ SAL +QA R L
Sbjct: 1334 GELSRLLEEKECLISQLSRGKALAAQSLEELRRQLEEESKAKSALAHAVQALRHDCDLLR 1393
Query: 133 RMEGAEAQRPEEAGRALAAVLEELRQTRADLHA 165
EA+ E R L+ E+ Q R+ A
Sbjct: 1394 EQHEEEAEAQAELQRLLSKANAEVAQWRSKYEA 1426
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 34.7 bits (78), Expect = 0.15
Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 21/221 (9%)
Query: 64 ENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQA 123
E + +E+ +L++ + R L+R L R +L R G E + L L
Sbjct: 984 EKVRKKEKEILESREKQQREALERALARLERRHSALQRHSTLGMEIEEQ-RQKLASLNSG 1042
Query: 124 TRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQ--------GWAARSWL 175
+R+ A +E AE + E+ L +++L+Q ++ VQ G A S L
Sbjct: 1043 SREQSGLQASLE-AEQEALEKDQERLEYEIQQLKQKIYEVDGVQKDHHGTLEGKVASSSL 1101
Query: 176 PAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACI---WVKATDVLNKTILFSYGTKRN 232
P E + L P+ +I + RL+ I + D + GT
Sbjct: 1102 PVSAEKSHLVPLMDARINAYIEEEVQRRLQDLHRVISEGCSTSADTMKDNEKLHNGT--- 1158
Query: 233 PYEIQLYLSYQSIVF-VVGGEENKLVAEAMVSLGRWTHLCG 272
IQ L Y+ +V +G + L +S+ R+ LCG
Sbjct: 1159 ---IQRKLKYERMVSRSLGANPDDLKDPIKISIPRYV-LCG 1195
>gi|7657253 T-complex protein 1 [Homo sapiens]
Length = 557
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 102 PCAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQ--- 158
P P APA ARL+S D L Q ++ + + L + G A AG +A VL E+ +
Sbjct: 250 PAHPNAPATARLSSPAD-LAQFSKGSDQLLEKQVGQLA----AAGINVAVVLGEVDEETL 304
Query: 159 TRADLHAVQGWAARSWL 175
T AD + + ARSW+
Sbjct: 305 TLADKYGIVVIQARSWM 321
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 33.5 bits (75), Expect = 0.33
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 62 MLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELL 121
+LE+ ++ + + LRGE+Q L+EE R + LA+ P EAR+ ++L
Sbjct: 1321 LLESQLQSQKRSHENEAEALRGEIQSLKEENNRQQQLLAQNLQ--LPPEARIEASLQH-- 1376
Query: 122 QATRDAGRRLARMEGAEAQ 140
+ TR L ME E Q
Sbjct: 1377 EITRLTNENLDLMEQLEKQ 1395
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 33.5 bits (75), Expect = 0.33
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 62 MLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELL 121
+LE+ ++ + + LRGE+Q L+EE R + LA+ P EAR+ ++L
Sbjct: 1348 LLESQLQSQKRSHENEAEALRGEIQSLKEENNRQQQLLAQNLQ--LPPEARIEASLQH-- 1403
Query: 122 QATRDAGRRLARMEGAEAQ 140
+ TR L ME E Q
Sbjct: 1404 EITRLTNENLDLMEQLEKQ 1422
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 33.1 bits (74), Expect = 0.43
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 190 KKIFGSVHPVRPMRLESFSACIWVKATD-----VLNKTILFSYGTKRNPYEIQLYLSYQS 244
K F S P P + SF+ +W+K V+ KT+ K E + Y++
Sbjct: 133 KSCFSS--PPSPKLMASFTLAVWLKPEQQGVMCVIEKTVDGQIVFKLTISEKETMFYYRT 190
Query: 245 IVFVVGGEEN--KLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNG---ELAATTVEMATG 299
V G + K++ + + +W HL + + S ++NG + +G
Sbjct: 191 ----VNGLQPPIKVMTLGRILVKKWIHL--SVQVHQTKISFFINGVEKDHTPFNARTLSG 244
Query: 300 HIVP-EGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRE 350
I G +QIGQ NG F GR+ F ++ L+N EI E
Sbjct: 245 SITDFASGTVQIGQSLNGL---------EQFVGRMQDFRLYQVALTNREILE 287
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 33.1 bits (74), Expect = 0.43
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 190 KKIFGSVHPVRPMRLESFSACIWVKATD-----VLNKTILFSYGTKRNPYEIQLYLSYQS 244
K F S P P + SF+ +W+K V+ KT+ K E + Y++
Sbjct: 133 KSCFSS--PPSPKLMASFTLAVWLKPEQQGVMCVIEKTVDGQIVFKLTISEKETMFYYRT 190
Query: 245 IVFVVGGEEN--KLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNG---ELAATTVEMATG 299
V G + K++ + + +W HL + + S ++NG + +G
Sbjct: 191 ----VNGLQPPIKVMTLGRILVKKWIHL--SVQVHQTKISFFINGVEKDHTPFNARTLSG 244
Query: 300 HIVP-EGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRE 350
I G +QIGQ NG F GR+ F ++ L+N EI E
Sbjct: 245 SITDFASGTVQIGQSLNGL---------EQFVGRMQDFRLYQVALTNREILE 287
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 32.7 bits (73), Expect = 0.56
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 81 LRGELQRLREELGRLAESL---ARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGA 137
L+G + +L EE RLAE L A CA RL + EL + R+ E
Sbjct: 903 LQGRVAQLEEERARLAEQLRAEAELCAEAEETRGRLAARKQELELVVSELEARVGEEEEC 962
Query: 138 EAQRPEEAGRALAAVLEELRQTRADLHAVQG 168
Q E R + + +++ A L A +G
Sbjct: 963 SRQMQTEKKR----LQQHIQELEAHLEAEEG 989
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 32.7 bits (73), Expect = 0.56
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 81 LRGELQRLREELGRLAESL---ARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGA 137
L+G + +L EE RLAE L A CA RL + EL + R+ E
Sbjct: 895 LQGRVAQLEEERARLAEQLRAEAELCAEAEETRGRLAARKQELELVVSELEARVGEEEEC 954
Query: 138 EAQRPEEAGRALAAVLEELRQTRADLHAVQG 168
Q E R + + +++ A L A +G
Sbjct: 955 SRQMQTEKKR----LQQHIQELEAHLEAEEG 981
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 32.7 bits (73), Expect = 0.56
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 81 LRGELQRLREELGRLAESL---ARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGA 137
L+G + +L EE RLAE L A CA RL + EL + R+ E
Sbjct: 936 LQGRVAQLEEERARLAEQLRAEAELCAEAEETRGRLAARKQELELVVSELEARVGEEEEC 995
Query: 138 EAQRPEEAGRALAAVLEELRQTRADLHAVQG 168
Q E R + + +++ A L A +G
Sbjct: 996 SRQMQTEKKR----LQQHIQELEAHLEAEEG 1022
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,682,168
Number of Sequences: 37866
Number of extensions: 636057
Number of successful extensions: 2202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 145
length of query: 381
length of database: 18,247,518
effective HSP length: 104
effective length of query: 277
effective length of database: 14,309,454
effective search space: 3963718758
effective search space used: 3963718758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.