Guide to the Human Genome
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Name: C1orf144 Sequence: fasta or formatted (152aa) NCBI GI: 167736389
Description:

putative MAPK activating protein PM20,PM21 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {133aa} putative MAPK activating protein PM20,PM21 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          9           2
 C cysteine            0.0          0           0
 D aspartate           5.3          8           2
 E glutamate          11.2         17           3
 F phenylalanine       0.7          1           1
 G glycine             4.6          7           1
 H histidine           0.0          0           0
 I isoleucine          6.6         10           1
 K lysine              7.9         12           2
 L leucine             5.9          9           1
 M methionine          0.7          1           1
 N asparagine          2.6          4           2
 P proline            11.8         18           3
 Q glutamine           6.6         10           1
 R arginine            9.9         15           2
 S serine             11.2         17           2
 T threonine           3.3          5           1
 V valine              4.6          7           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   putative MAPK activating protein PM20,PM21 isoform ... 
C1orf144              0.775   putative MAPK activating protein PM20,PM21 isoform 2...
MAP7D1                0.051   MAP7 domain containing 1 
BAT2D1                0.036   HBxAg transactivated protein 2 
TRIM25                0.036   tripartite motif-containing 25 
CREM                  0.036   cAMP responsive element modulator isoform v 
CREM                  0.036   cAMP responsive element modulator isoform t 
CREM                  0.036   cAMP responsive element modulator isoform p 
CREM                  0.036   cAMP responsive element modulator isoform n 
FOXC1                 0.033   forkhead box C1 
NEFM                  0.033   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.033   neurofilament, medium polypeptide 150kDa isoform 2 ...
BIN2                  0.033   bridging integrator 2 
TFAP4                 0.033   transcription factor AP-4 (activating enhancer bindin...
KDM5A                 0.033   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.033   retinoblastoma binding protein 2 isoform 2 
COL16A1               0.029   alpha 1 type XVI collagen precursor 
TRERF1                0.029   transcriptional regulating factor 1 
NACAD                 0.029   NAC alpha domain containing 
AEBP1                 0.029   adipocyte enhancer binding protein 1 precursor [Homo...
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
PAF1                  0.029   Paf1, RNA polymerase II associated factor, homolog [...
ZNF609                0.029   zinc finger protein 609 
TTN                   0.025   titin isoform N2-A 
SETD1B                0.025   SET domain containing 1B 
SSH1                  0.025   slingshot 1 isoform 1 
DIDO1                 0.025   death inducer-obliterator 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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