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Search of human proteins with 110611172
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110611172 amnionless protein precursor [Homo sapiens]
(453 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110611172 amnionless protein precursor [Homo sapiens] 918 0.0
gi|239757179 PREDICTED: hypothetical protein [Homo sapiens] 37 0.028
gi|239751689 PREDICTED: hypothetical protein XP_002347966 [Homo ... 37 0.028
gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo ... 37 0.028
gi|19923632 Kazal-type serine peptidase inhibitor domain 1 precu... 32 0.91
gi|194328689 storkhead box 1 isoform c [Homo sapiens] 32 1.2
gi|194328687 storkhead box 1 isoform b [Homo sapiens] 32 1.2
gi|194328691 storkhead box 1 isoform a [Homo sapiens] 32 1.2
gi|63025200 storkhead box 1 isoform a [Homo sapiens] 32 1.2
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 32 1.5
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 31 2.0
gi|47778923 cytochrome b5 reductase b5R.2 [Homo sapiens] 31 2.6
gi|14550416 Fc receptor-like 4 precursor [Homo sapiens] 30 3.4
gi|169171626 PREDICTED: hypothetical protein [Homo sapiens] 30 3.4
gi|89026075 PREDICTED: hypothetical protein [Homo sapiens] 30 3.4
gi|89025126 PREDICTED: hypothetical protein [Homo sapiens] 30 3.4
gi|239508901 PREDICTED: hypothetical protein [Homo sapiens] 30 3.4
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 30 3.4
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 30 3.4
gi|71143132 carcinoembryonic antigen-related cell adhesion molec... 30 3.4
gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens] 30 4.5
gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] 30 4.5
gi|24797143 sorting nexin 14 isoform b [Homo sapiens] 30 5.9
gi|24797145 sorting nexin 14 isoform a [Homo sapiens] 30 5.9
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 29 7.7
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 29 7.7
gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens] 29 7.7
gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Ho... 29 7.7
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 29 7.7
>gi|110611172 amnionless protein precursor [Homo sapiens]
Length = 453
Score = 918 bits (2372), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MGVLGRVLLWLQLCALTQAVSKLWVPNTDFDVAANWSQNRTPCAGGAVEFPADKMVSVLV 60
MGVLGRVLLWLQLCALTQAVSKLWVPNTDFDVAANWSQNRTPCAGGAVEFPADKMVSVLV
Sbjct: 1 MGVLGRVLLWLQLCALTQAVSKLWVPNTDFDVAANWSQNRTPCAGGAVEFPADKMVSVLV 60
Query: 61 QEGHAVSDMLLPLDGELVLASGAGFGVSDVGSHLDCGAGEPAVFRDSDRFSWHDPHLWRS 120
QEGHAVSDMLLPLDGELVLASGAGFGVSDVGSHLDCGAGEPAVFRDSDRFSWHDPHLWRS
Sbjct: 61 QEGHAVSDMLLPLDGELVLASGAGFGVSDVGSHLDCGAGEPAVFRDSDRFSWHDPHLWRS 120
Query: 121 GDEAPGLFFVDAERVPCRHDDVFFPPSASFRVGLGPGASPVRVRSISALGRTFTRDEDLA 180
GDEAPGLFFVDAERVPCRHDDVFFPPSASFRVGLGPGASPVRVRSISALGRTFTRDEDLA
Sbjct: 121 GDEAPGLFFVDAERVPCRHDDVFFPPSASFRVGLGPGASPVRVRSISALGRTFTRDEDLA 180
Query: 181 VFLASRAGRLRFHGPGALSVGPEDCADPSGCVCGNAEAQPWICAALLQPLGGRCPQAACH 240
VFLASRAGRLRFHGPGALSVGPEDCADPSGCVCGNAEAQPWICAALLQPLGGRCPQAACH
Sbjct: 181 VFLASRAGRLRFHGPGALSVGPEDCADPSGCVCGNAEAQPWICAALLQPLGGRCPQAACH 240
Query: 241 SALRPQGQCCDLCGAVVLLTHGPAFDLERYRARILDTFLGLPQYHGLQVAVSKVPRSSRL 300
SALRPQGQCCDLCGAVVLLTHGPAFDLERYRARILDTFLGLPQYHGLQVAVSKVPRSSRL
Sbjct: 241 SALRPQGQCCDLCGAVVLLTHGPAFDLERYRARILDTFLGLPQYHGLQVAVSKVPRSSRL 300
Query: 301 READTEIQVVLVENGPETGGAGRLARALLADVAENGEALGVLEATMRESGAHVWGSSAAG 360
READTEIQVVLVENGPETGGAGRLARALLADVAENGEALGVLEATMRESGAHVWGSSAAG
Sbjct: 301 READTEIQVVLVENGPETGGAGRLARALLADVAENGEALGVLEATMRESGAHVWGSSAAG 360
Query: 361 LAGGVAAAVLLALLVLLVAPPLLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDVTASEELP 420
LAGGVAAAVLLALLVLLVAPPLLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDVTASEELP
Sbjct: 361 LAGGVAAAVLLALLVLLVAPPLLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDVTASEELP 420
Query: 421 LPRRLSLVPKAAADSTSHSYFVNPLFAGAEAEA 453
LPRRLSLVPKAAADSTSHSYFVNPLFAGAEAEA
Sbjct: 421 LPRRLSLVPKAAADSTSHSYFVNPLFAGAEAEA 453
>gi|239757179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 280
Score = 37.4 bits (85), Expect = 0.028
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 23/91 (25%)
Query: 315 GPETGGAGR-LARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLAL 373
G GG+GR A A+L VA +G+A+ V T R +G HV
Sbjct: 86 GAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHV-------------------- 125
Query: 374 LVLLVAPPLLRRAGRLRWRRHEAAAPAGAPL 404
LVLL P+L +A RL RH PA PL
Sbjct: 126 LVLLTHQPVLHQASRL--HRHIVLQPAAVPL 154
>gi|239751689 PREDICTED: hypothetical protein XP_002347966 [Homo
sapiens]
Length = 280
Score = 37.4 bits (85), Expect = 0.028
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 23/91 (25%)
Query: 315 GPETGGAGR-LARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLAL 373
G GG+GR A A+L VA +G+A+ V T R +G HV
Sbjct: 86 GAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHV-------------------- 125
Query: 374 LVLLVAPPLLRRAGRLRWRRHEAAAPAGAPL 404
LVLL P+L +A RL RH PA PL
Sbjct: 126 LVLLTHQPVLHQASRL--HRHIVLQPAAVPL 154
>gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo
sapiens]
Length = 280
Score = 37.4 bits (85), Expect = 0.028
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 23/91 (25%)
Query: 315 GPETGGAGR-LARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLAL 373
G GG+GR A A+L VA +G+A+ V T R +G HV
Sbjct: 86 GAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHV-------------------- 125
Query: 374 LVLLVAPPLLRRAGRLRWRRHEAAAPAGAPL 404
LVLL P+L +A RL RH PA PL
Sbjct: 126 LVLLTHQPVLHQASRL--HRHIVLQPAAVPL 154
>gi|19923632 Kazal-type serine peptidase inhibitor domain 1
precursor [Homo sapiens]
Length = 304
Score = 32.3 bits (72), Expect = 0.91
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 189 RLRFHGPGALSVGPEDCADPSGCVCG---NAEAQPWICAALLQPLGGRCPQAACHSALRP 245
RL G G PE+CA P GC+ G +A W CA L L P A +
Sbjct: 45 RLLAEGEGCAPCRPEECAAPRGCLAGRVRDACGCCWECANLEGQLCDLDPSAHFYGHCGE 104
Query: 246 QGQC 249
Q +C
Sbjct: 105 QLEC 108
>gi|194328689 storkhead box 1 isoform c [Homo sapiens]
Length = 169
Score = 32.0 bits (71), Expect = 1.2
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 323 RLARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLV-APP 381
RL A AE V A R + W + A A +A L VLLV APP
Sbjct: 18 RLEAQKAAGAAEEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGVLLVRAPP 77
Query: 382 LLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDV-----TASEELPL 421
+ R WRR P G + VF V T S+ +PL
Sbjct: 78 ACLQVLRDAWRRRALRPPRGFRIRAVGDVFPVQMNPITQSQFVPL 122
>gi|194328687 storkhead box 1 isoform b [Homo sapiens]
Length = 227
Score = 32.0 bits (71), Expect = 1.2
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 323 RLARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLV-APP 381
RL A AE V A R + W + A A +A L VLLV APP
Sbjct: 18 RLEAQKAAGAAEEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGVLLVRAPP 77
Query: 382 LLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDV-----TASEELPL 421
+ R WRR P G + VF V T S+ +PL
Sbjct: 78 ACLQVLRDAWRRRALRPPRGFRIRAVGDVFPVQMNPITQSQFVPL 122
>gi|194328691 storkhead box 1 isoform a [Homo sapiens]
Length = 989
Score = 32.0 bits (71), Expect = 1.2
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 323 RLARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLV-APP 381
RL A AE V A R + W + A A +A L VLLV APP
Sbjct: 18 RLEAQKAAGAAEEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGVLLVRAPP 77
Query: 382 LLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDV-----TASEELPL 421
+ R WRR P G + VF V T S+ +PL
Sbjct: 78 ACLQVLRDAWRRRALRPPRGFRIRAVGDVFPVQMNPITQSQFVPL 122
>gi|63025200 storkhead box 1 isoform a [Homo sapiens]
Length = 989
Score = 32.0 bits (71), Expect = 1.2
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 323 RLARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLV-APP 381
RL A AE V A R + W + A A +A L VLLV APP
Sbjct: 18 RLEAQKAAGAAEEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGVLLVRAPP 77
Query: 382 LLRRAGRLRWRRHEAAAPAGAPLGFRNPVFDV-----TASEELPL 421
+ R WRR P G + VF V T S+ +PL
Sbjct: 78 ACLQVLRDAWRRRALRPPRGFRIRAVGDVFPVQMNPITQSQFVPL 122
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 31.6 bits (70), Expect = 1.5
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 145 PPSASFRVGLGPGASPVRVRSISALGRTFTRDEDLAVFLASRAGRL---RFHGPGALSV- 200
PP S LGPG + IS+LG + R FLAS GR HG A+ V
Sbjct: 605 PPCFSL---LGPGPWALPGGPISSLGVSSLRSHH---FLASTPGRTTAGAHHGLPAMQVE 658
Query: 201 ----GPEDCADPSGCVCGNAEAQPWICAALLQ 228
P++ P G E Q W+ A L +
Sbjct: 659 HVHCSPQELGSPEGSAGSWREEQGWLSAELTE 690
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 170 GRTFTRDEDLAVFLASRAGRLRFHGPGALSVGPEDCADPSGCVCGNAEAQPWICAALLQP 229
G+ +DED+ + G LR+H PE C CVC N + +C ++
Sbjct: 26 GQVEGQDEDIPPITCVQNG-LRYHDRDVWK--PEPCRI---CVCDNGKV---LCDDVICD 76
Query: 230 LGGRCPQAACHSALRPQGQCCDLC 253
CP A P+G+CC +C
Sbjct: 77 ETKNCPGAEV-----PEGECCPVC 95
>gi|47778923 cytochrome b5 reductase b5R.2 [Homo sapiens]
Length = 276
Score = 30.8 bits (68), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 181 VFLASRAGRLRFHGPGALSVGPEDCADP 208
+F GRL +HGPG L + P+ ++P
Sbjct: 115 IFFRGPRGRLFYHGPGNLGIRPDQTSEP 142
>gi|14550416 Fc receptor-like 4 precursor [Homo sapiens]
Length = 515
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 341 VLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVL 376
VL T+RE+ + G AAG GG+ +A+LLA+ +L
Sbjct: 372 VLNVTVRETPGNRDGLVAAGATGGLLSALLLAVALL 407
>gi|169171626 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 3.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 214 GNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCC-----DLCGAVVLLTHGPAF 265
G A A W A L P+GG P A S Q Q C C +V + PAF
Sbjct: 101 GPARASAWPPQAQLLPVGGLSPDPALASRHPLQAQSCFQLLDHFCACLVAASPSPAF 157
>gi|89026075 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 3.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 214 GNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCC-----DLCGAVVLLTHGPAF 265
G A A W A L P+GG P A S Q Q C C +V + PAF
Sbjct: 101 GPARASAWPPQAQLLPVGGLSPDPALASRHPLQAQSCFQLLDHFCACLVAASPSPAF 157
>gi|89025126 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 3.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 214 GNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCC-----DLCGAVVLLTHGPAF 265
G A A W A L P+GG P A S Q Q C C +V + PAF
Sbjct: 101 GPARASAWPPQAQLLPVGGLSPDPALASRHPLQAQSCFQLLDHFCACLVAASPSPAF 157
>gi|239508901 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 3.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 214 GNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCC-----DLCGAVVLLTHGPAF 265
G A A W A L P+GG P A S Q Q C C +V + PAF
Sbjct: 101 GPARASAWPPQAQLLPVGGLSPDPALASRHPLQAQSCFQLLDHFCACLVAASPSPAF 157
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 209 SGCVCGNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCCDLC 253
+ CVC + + C A+L CP A C +P G CC C
Sbjct: 445 TACVCQDGVPK---CGAVL------CPPAPCQHPTQPPGACCPSC 480
Score = 29.3 bits (64), Expect = 7.7
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 202 PEDCADP-SGCVCGNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCCDLC 253
P DP S C C N Q +PL CP C + GQCC +C
Sbjct: 322 PVGSGDPCSHCRCANGSVQ-------CEPLP--CPPVPCRHPGKIPGQCCPVC 365
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 209 SGCVCGNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCCDLC 253
+ CVC + + C A+L CP A C +P G CC C
Sbjct: 387 TACVCQDGVPK---CGAVL------CPPAPCQHPTQPPGACCPSC 422
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 204 DCADPSGCVCGNAEAQPWICAALLQPLGGRCPQAACHSALR--PQGQCCDLCGA 255
+ A P C + W+C + CP+ +C + R P G CC +C A
Sbjct: 1034 ELAPPDPCYTCQCQDLTWLC------IHQACPELSCPLSERHTPPGSCCPVCRA 1081
Score = 29.3 bits (64), Expect = 7.7
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 202 PEDCADP-SGCVCGNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCCDLC 253
P DP S C C N Q +PL CP C + GQCC +C
Sbjct: 264 PVGSGDPCSHCRCANGSVQ-------CEPLP--CPPVPCRHPGKIPGQCCPVC 307
>gi|71143132 carcinoembryonic antigen-related cell adhesion molecule
4 [Homo sapiens]
Length = 244
Score = 30.4 bits (67), Expect = 3.4
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 352 HVWGSSAAGLAGGVAAAVL------LALLVLLVAPPLLRRAGRLRWRRHEAAAPAGAPLG 405
HV ++ GL G A ++ +AL+ LV LL R GR +R P A
Sbjct: 139 HVHQNNVPGLPVGAVAGIVTGVLVGVALVAALVCFLLLSRTGRASIQRDLREQPPPASTP 198
Query: 406 FRNPVFDVTASEELPLPRRLSLVPKAAADSTSHSY 440
P T S LP PR + + + S ++ Y
Sbjct: 199 GHGPSHRSTFSAPLPSPRTATPIYEELLYSDANIY 233
>gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens]
Length = 392
Score = 30.0 bits (66), Expect = 4.5
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 337 EALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLVAPPLLRRAGRLRWRRHEA 396
+ LG+L M E W + G VA +L LL +L+ AGR+R RR +A
Sbjct: 273 QLLGLLPEHMAEKLCEAWAFGQSHQTGVVALGLLTCLLAMLL-------AGRIRLRRIDA 325
>gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
Length = 642
Score = 30.0 bits (66), Expect = 4.5
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 337 EALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLVAPPLLRRAGRLRWRRHEA 396
+ LG+L M E W + G VA +L LL +L+ AGR+R RR +A
Sbjct: 273 QLLGLLPEHMAEKLCEAWAFGQSHQTGVVALGLLTCLLAMLL-------AGRIRLRRIDA 325
>gi|24797143 sorting nexin 14 isoform b [Homo sapiens]
Length = 893
Score = 29.6 bits (65), Expect = 5.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 243 LRPQGQCCDLCGAVVLLTHGPAFDLERYR 271
L PQG C +CG V H P+ LE Y+
Sbjct: 94 LFPQGHSCAVCGKVKCKRHRPSLLLENYQ 122
>gi|24797145 sorting nexin 14 isoform a [Homo sapiens]
Length = 946
Score = 29.6 bits (65), Expect = 5.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 243 LRPQGQCCDLCGAVVLLTHGPAFDLERYR 271
L PQG C +CG V H P+ LE Y+
Sbjct: 94 LFPQGHSCAVCGKVKCKRHRPSLLLENYQ 122
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 29.3 bits (64), Expect = 7.7
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 319 GGAGRLARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLV 378
GGAGR RAL G+ALG+L +G G A G AG A + A+L
Sbjct: 146 GGAGRQRRAL------GGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGAAVLRGTA 199
Query: 379 APPLLRRAGRLRWRRHEAA 397
P RR G + R AA
Sbjct: 200 GAP-ARRVGVVAERAASAA 217
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 29.3 bits (64), Expect = 7.7
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 319 GGAGRLARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLALLVLLV 378
GGAGR RAL G+ALG+L +G G A G AG A + A+L
Sbjct: 146 GGAGRQRRAL------GGQALGLLAQVGIGAGHARGGRGAVGPAGQHRARLGAAVLRGTA 199
Query: 379 APPLLRRAGRLRWRRHEAA 397
P RR G + R AA
Sbjct: 200 GAP-ARRVGVVAERAASAA 217
>gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens]
Length = 699
Score = 29.3 bits (64), Expect = 7.7
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 202 PEDCADPSGCVCGNAEAQPWICAALLQPLGGRCPQAACHSALRPQGQCCDLCGAVV 257
PE C C+C + +C + C C + P+G+CC +C A V
Sbjct: 118 PEPCTT---CLCSDGRV---LCDETM------CHPQRCPQTVIPEGECCPVCSATV 161
>gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Homo
sapiens]
Length = 269
Score = 29.3 bits (64), Expect = 7.7
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 197 ALSVGPEDCADPSGCVCGNAEAQPWICAALLQPLG----GRCPQAACHSALR 244
A SVG C D + +A Q + Q LG G CP+A C ALR
Sbjct: 18 ASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALR 69
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 29.3 bits (64), Expect = 7.7
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 197 ALSVGPEDCADPSGCVCGNAEAQPWICAALLQPLG----GRCPQAACHSALR 244
A SVG C D + +A Q + Q LG G CP+A C ALR
Sbjct: 18 ASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALR 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,114,715
Number of Sequences: 37866
Number of extensions: 956503
Number of successful extensions: 2442
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2418
Number of HSP's gapped (non-prelim): 42
length of query: 453
length of database: 18,247,518
effective HSP length: 106
effective length of query: 347
effective length of database: 14,233,722
effective search space: 4939101534
effective search space used: 4939101534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.