Guide to the Human Genome
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Name: LRRC18 Sequence: fasta or formatted (261aa) NCBI GI: 167466264
Description:

leucine rich repeat containing 18

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          8           2
 C cysteine            1.9          5           1
 D aspartate           5.7         15           1
 E glutamate           4.6         12           2
 F phenylalanine       2.3          6           1
 G glycine             4.2         11           1
 H histidine           1.5          4           1
 I isoleucine          8.0         21           1
 K lysine             10.7         28           2
 L leucine            14.6         38           2
 M methionine          2.3          6           1
 N asparagine          8.8         23           2
 P proline             5.4         14           1
 Q glutamine           1.5          4           1
 R arginine            6.5         17           2
 S serine              7.7         20           2
 T threonine           5.0         13           3
 V valine              3.8         10           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 18 
LRDD                  0.135   leucine rich repeat and death domain containing prot...
LRDD                  0.135   leucine rich repeat and death domain containing prot...
LRRC1                 0.127   leucine rich repeat containing 1 
LRRIQ4                0.122   leucine-rich repeats and IQ motif containing 4 [Hom...
RSU1                  0.120   ras suppressor protein 1 isoform 1 
LRRC8A                0.120   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.120   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.120   leucine rich repeat containing 8 family, member A [...
LRCH2                 0.118   leucine-rich repeats and calponin homology (CH) dom...
LRRC40                0.118   leucine rich repeat containing 40 
SHOC2                 0.116   soc-2 suppressor of clear homolog 
LRRC39                0.116   leucine rich repeat containing 39 
LRRC7                 0.114   leucine rich repeat containing 7 
ERBB2IP               0.114   ERBB2 interacting protein isoform 7 
ERBB2IP               0.114   ERBB2 interacting protein isoform 2 
LRRC57                0.114   leucine rich repeat containing 57 
RSU1                  0.112   ras suppressor protein 1 isoform 2 
MFHAS1                0.110   malignant fibrous histiocytoma amplified sequence 1...
SCRIB                 0.108   scribble isoform b 
SCRIB                 0.108   scribble isoform a 
LRCH4                 0.108   leucine-rich repeats and calponin homology (CH) doma...
LRRC8D                0.108   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.108   leucine rich repeat containing 8 family, member D [H...
LRCH1                 0.106   leucine-rich repeats and calponin homology (CH) doma...
LRCH3                 0.106   leucine-rich repeats and calponin homology (CH) doma...
LOC401387             0.104   leucine-rich repeat and death domain-containing pro...
FLII                  0.104   flightless I homolog 
LRDD                  0.100   leucine rich repeat and death domain containing prot...
LRRC69                0.096   leucine rich repeat containing 69 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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