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Search of human proteins with 167466262
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|167466262 zinc finger, CCHC domain containing 16 [Homo
sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens] 627 e-180
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 92 6e-19
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens] 85 9e-17
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 82 5e-16
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 54 1e-07
gi|62821787 COBL-like 1 [Homo sapiens] 35 0.085
gi|164420691 homeodomain interacting protein kinase 2 isoform 2 ... 33 0.25
gi|164420685 homeodomain interacting protein kinase 2 isoform 1 ... 33 0.25
gi|24308309 transmembrane protein 163 [Homo sapiens] 32 0.55
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom... 31 1.2
gi|38176300 nestin [Homo sapiens] 30 3.6
gi|40548408 p30 DBC protein [Homo sapiens] 30 3.6
gi|24432106 p30 DBC protein [Homo sapiens] 30 3.6
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi... 30 3.6
gi|239752520 PREDICTED: similar to Rap guanine nucleotide exchan... 29 4.7
gi|217035164 coiled-coil domain containing 27 [Homo sapiens] 29 4.7
gi|157674356 nexin-related serine protease inhibitor [Homo sapiens] 29 4.7
gi|57527756 hypothetical protein LOC54953 [Homo sapiens] 29 4.7
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 29 4.7
gi|7657261 Rap guanine nucleotide exchange factor 2 [Homo sapiens] 29 4.7
gi|50345831 forkhead box J3 [Homo sapiens] 29 4.7
gi|109689723 abl interactor 2 [Homo sapiens] 29 6.1
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 29 6.1
gi|226246595 speedy homolog E6 [Homo sapiens] 28 7.9
gi|239743311 PREDICTED: similar to speedy homolog A isoform 1 [H... 28 7.9
gi|239743297 PREDICTED: speedy homolog E6 [Homo sapiens] 28 7.9
gi|239508994 PREDICTED: similar to speedy homolog A isoform 7 [H... 28 7.9
gi|71979927 speedy homolog E2 [Homo sapiens] 28 7.9
gi|157694524 plexin D1 [Homo sapiens] 28 7.9
>gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens]
Length = 310
Score = 627 bits (1616), Expect = e-180
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MEKCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEH 60
MEKCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEH
Sbjct: 1 MEKCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEH 60
Query: 61 LTQFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDKST 120
LTQFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDKST
Sbjct: 61 LTQFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDKST 120
Query: 121 LLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNETNQ 180
LLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNETNQ
Sbjct: 121 LLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNETNQ 180
Query: 181 SGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASLIQ 240
SGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASLIQ
Sbjct: 181 SGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASLIQ 240
Query: 241 HQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRSRA 300
HQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRSRA
Sbjct: 241 HQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRSRA 300
Query: 301 PATTNNTAHQ 310
PATTNNTAHQ
Sbjct: 301 PATTNNTAHQ 310
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 92.0 bits (227), Expect = 6e-19
Identities = 78/264 (29%), Positives = 111/264 (42%), Gaps = 19/264 (7%)
Query: 47 LATTVMPVPYSLEHLTQFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQ 106
L T P+ Y+L F GD EFL Q+ +Y+ P A + + S +
Sbjct: 231 LEATDFPLQYTLT----FSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGR 286
Query: 107 LESCGIISGPDKSTLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATF 166
+ +S LL+Q E+ I Q +F P + + +G+ F
Sbjct: 287 AGWWFQLLLDIQSPLLEQCESFIPVLQDTFDNPENMKDANQCIHQLCQGEGHVATH---F 343
Query: 167 HLLAQNLICNETNQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELL 226
HL+AQ L +E+ QF++ LA QDE S T NL DLITQCI L++K P
Sbjct: 344 HLIAQELNWDESTLWIQFQEGLASSIQDELSHTSPATNLSDLITQCISLEEKPDPNPLGK 403
Query: 227 QSETQLPLLASLIQHQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQS 286
S + P PP + P+Q ++ A+ R + +LCLYC
Sbjct: 404 SSSAEGD------------GPESPPAENQPMQAAINCPHISEAEWVRWHKGRLCLYCGYP 451
Query: 287 GHFTRDCLAKRSRAPATTNNTAHQ 310
GHF RDC K +A N A Q
Sbjct: 452 GHFARDCPVKPHQALQAGNIQACQ 475
>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
Length = 325
Score = 84.7 bits (208), Expect = 9e-17
Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 12/310 (3%)
Query: 3 KCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLT 62
K ++ ++ +Q + L EN LR Q++ PT E+ ++ A A P P E
Sbjct: 22 KQSEENNNLQSQVQKLTEENTTLREQVE-PTPEDEDDDIELRGAAAAAAPPPPIEEECPE 80
Query: 63 ----QFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDK 118
+F G+P + F+ Q ++ + ++ ++ +
Sbjct: 81 DLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERS 140
Query: 119 STLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNET 178
L+ Y ++E + F P ++E+ + +G S F ++AQ+L NE
Sbjct: 141 HYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEP 200
Query: 179 NQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASL 238
Q+ + L+D Q+E S ++ +L LI QCI ++++ + + + P A +
Sbjct: 201 ALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLARAAAARKPRS--PPRALV 258
Query: 239 IQHQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRS 298
+ H A DP G ++R LT ++ R+++ LCLYC GH+ +C AK S
Sbjct: 259 LPHIASHHQVDPTEPVGGARMR-----LTQEEKERRRKLNLCLYCGTGGHYADNCPAKAS 313
Query: 299 RAPATTNNTA 308
++ N+ A
Sbjct: 314 KSSPAGNSPA 323
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 82.4 bits (202), Expect = 5e-16
Identities = 69/302 (22%), Positives = 131/302 (43%), Gaps = 12/302 (3%)
Query: 3 KCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLT 62
K ++ ++ +Q + L EN LR Q++ PT E+ ++ A A P P E
Sbjct: 22 KQSEENNNLQSQVQKLTEENTTLREQVE-PTPEDEDDDIELRGAAAAAAPPPPIEEECPE 80
Query: 63 ----QFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDK 118
+F G+P + F+ Q ++ + ++ ++ +
Sbjct: 81 DLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERS 140
Query: 119 STLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNET 178
L+ Y ++E + F P ++E+ + +G S F ++AQ+L NE
Sbjct: 141 HYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEP 200
Query: 179 NQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASL 238
Q+ + L+D Q+E S ++ +L LI QCI ++++ + + + P A +
Sbjct: 201 ALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLARAAAARKPRS--PPRALV 258
Query: 239 IQHQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRS 298
+ H A DP G ++R LT ++ R+++ LCLYC GH+ +C AK S
Sbjct: 259 LPHIASHHQVDPTEPVGGARMR-----LTQEEKERRRKLNLCLYCGTGGHYADNCPAKAS 313
Query: 299 RA 300
++
Sbjct: 314 KS 315
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 54.3 bits (129), Expect = 1e-07
Identities = 35/164 (21%), Positives = 70/164 (42%)
Query: 55 PYSLEHLTQFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIIS 114
P + F GDP +EFL Q+ T++ ++ P ++ + + + + I
Sbjct: 147 PLERPEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTGEAKDWAISV 206
Query: 115 GPDKSTLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLI 174
+ S L + + E ++ F P + K +G + F LAQ L
Sbjct: 207 TQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHCTLGSYADAFQFLAQFLS 266
Query: 175 CNETNQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKK 218
++ QF K L++ + E + M +L +LI +C+++++K
Sbjct: 267 WDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERK 310
>gi|62821787 COBL-like 1 [Homo sapiens]
Length = 1166
Score = 35.0 bits (79), Expect = 0.085
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 113 ISGPDKSTL--LKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLA 170
+S PD + + LK + + + P +EIN ++ +KF +++Q P++F L
Sbjct: 850 VSSPDDAMVSPLKPAPKMTRDTGTAPFAPNLEEINNILESKFKSRASNAQAKPSSFFLQM 909
Query: 171 QNLICNETNQSGQFEKALADPNQDEESVTDM---MDNLPDLITQCIQLDKKHSDRPELLQ 227
Q + S + A PN + +T+ D LP L K P+ L
Sbjct: 910 QKRVSGHYVTSAAAKSVHAAPNPAPKELTNKEAERDMLPSPEQTLSPLSKMPHSVPQPLV 969
Query: 228 SETQLPLLASLIQHQALFSPTDPPPKKGPIQLREGQL 264
+T ++ QA + PP P+ + Q+
Sbjct: 970 EKTDDDVIG-----QAPAEASPPPIAPKPVTIPASQV 1001
>gi|164420691 homeodomain interacting protein kinase 2 isoform 2 [Homo
sapiens]
Length = 1171
Score = 33.5 bits (75), Expect = 0.25
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 15 PSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLTQFHG 66
P F Q + L L QH TT+ T + + T+ PYS H + HG
Sbjct: 1003 PHFQQQQPLNLSQAQQHITTDRTGSHRRQQAYITPTMAQAPYSFPHNSPSHG 1054
>gi|164420685 homeodomain interacting protein kinase 2 isoform 1 [Homo
sapiens]
Length = 1198
Score = 33.5 bits (75), Expect = 0.25
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 15 PSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLTQFHG 66
P F Q + L L QH TT+ T + + T+ PYS H + HG
Sbjct: 1030 PHFQQQQPLNLSQAQQHITTDRTGSHRRQQAYITPTMAQAPYSFPHNSPSHG 1081
>gi|24308309 transmembrane protein 163 [Homo sapiens]
Length = 289
Score = 32.3 bits (72), Expect = 0.55
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 236 ASLIQHQALFSPTDPPPKKG--PIQLREGQLPL-TPAKRARQQETQLCLYCSQSGHFTRD 292
A+ IQ ++ PT PPP +G P G PL +P + Q E + + S+SG F+ D
Sbjct: 4 AAGIQRRSSQGPTVPPPPRGHAPPAAAPGPAPLSSPVREPPQLEEERQVRISESGQFS-D 62
Query: 293 CLAKRSRAPATTNNTAHQ 310
L R ++T H+
Sbjct: 63 GLEDRGLLESSTRLKPHE 80
>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
sapiens]
Length = 239
Score = 31.2 bits (69), Expect = 1.2
Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 7 SSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQV-MPALATTVMPVPYSLEHLTQ-- 63
++S ++ E S L+AE L ++ E T R + +P P+ + T+
Sbjct: 35 TNSALRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISSITSNGTRPM 94
Query: 64 ----------FHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGII 113
F GDP + FL Q+ ++ P ++ L+ + E I
Sbjct: 95 TTPPTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIP 154
Query: 114 SGPDKSTLLKQYENLILEFQQSFGKPTK 141
S L Y+ + E ++++ P +
Sbjct: 155 HMQPDSPLRNNYQGFLAELRRTYKSPLR 182
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 29.6 bits (65), Expect = 3.6
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 26 RLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLTQFHGDPANCSEFLTQVTTYLTAL 85
+L++Q P T + G ++P L+ T +P P T N EFL T L +
Sbjct: 330 KLELQFPRTPEGRRLGSLLPVLSPTSLPSPLPATLETPVPAFLKN-QEFLQARTPTLAST 388
Query: 86 ------QISNPANDAQIK 97
Q +PA DA+I+
Sbjct: 389 PIPPTPQAPSPAVDAEIR 406
>gi|40548408 p30 DBC protein [Homo sapiens]
Length = 923
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 25/95 (26%)
Query: 189 ADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPE-LLQSETQLPLLASLIQHQALFSP 247
A P Q+ + T+ + PD + Q +++++ PE Q ET L P
Sbjct: 451 APPTQEAQGETEPTEQAPDALEQAADTSRRNAETPEATTQQETDTDL------------P 498
Query: 248 TDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLY 282
PPP PL PA AR L L+
Sbjct: 499 EAPPP------------PLEPAVIARPGCVNLSLH 521
>gi|24432106 p30 DBC protein [Homo sapiens]
Length = 923
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 25/95 (26%)
Query: 189 ADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPE-LLQSETQLPLLASLIQHQALFSP 247
A P Q+ + T+ + PD + Q +++++ PE Q ET L P
Sbjct: 451 APPTQEAQGETEPTEQAPDALEQAADTSRRNAETPEATTQQETDTDL------------P 498
Query: 248 TDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLY 282
PPP PL PA AR L L+
Sbjct: 499 EAPPP------------PLEPAVIARPGCVNLSLH 521
>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
sapiens]
Length = 146
Score = 29.6 bits (65), Expect = 3.6
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 18 LQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLTQFHGDPANCSEFLTQ 77
L EN L Q++ E + QV P PVP+ F+G+ + EF+ Q
Sbjct: 19 LSIENSQLMEQLRLLVCERASLLRQVRPPSC----PVPFP----ETFNGESSRLPEFIVQ 70
Query: 78 VTTYLTALQISNPANDA-QIKLFFDYLSQQLESCGIISGPDKSTLLKQYENLILEFQQSF 136
+Y+ + + NDA ++ L+ + E + S +L Y + E +Q F
Sbjct: 71 TASYMLVNE-NRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCF 129
Query: 137 G 137
G
Sbjct: 130 G 130
>gi|239752520 PREDICTED: similar to Rap guanine nucleotide exchange
factor 2, partial [Homo sapiens]
Length = 803
Score = 29.3 bits (64), Expect = 4.7
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 105 QQLESCGIISGPDKSTLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPA 164
++L+S +I + IL SFG ++P M+ ++ KG ++ D
Sbjct: 168 EELDSWSVILNGSVEVTYPDGKAEILCMGNSFG------VSPTMDKEYMKGVMRTKVDDC 221
Query: 165 TFHLLAQNLICNETNQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPE 224
F +AQ C N Q EK + ++ E V ++ + +LD+ + +
Sbjct: 222 QFVCIAQQDYCRILN---QVEKNMQKVEEEGEIV---------MVKEHRELDRTGTRKGH 269
Query: 225 LLQSETQLPLLASLIQHQALFSPT 248
++ T L L++ ++ PT
Sbjct: 270 IVIKGTSERLTMHLVEEHSVVDPT 293
>gi|217035164 coiled-coil domain containing 27 [Homo sapiens]
Length = 656
Score = 29.3 bits (64), Expect = 4.7
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 122 LKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNETNQS 181
L++YE +IL+FQ + + T+ + G +S Q F I N N++
Sbjct: 415 LEEYEQVILDFQFNL-EATRTRYS------LATGVIASLQQQVDFQETQLRKI-NTENET 466
Query: 182 GQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQL 232
+K L + Q +++TD NL + DKKH + L++ + QL
Sbjct: 467 --LQKELRERRQQLQAMTDKFSNLRE--------DKKHQEMMGLIEKDNQL 507
>gi|157674356 nexin-related serine protease inhibitor [Homo sapiens]
Length = 424
Score = 29.3 bits (64), Expect = 4.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 7 SSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLTQFHG 66
SS+ Q+ P F A L+L++ M H TTE + Q V+ +PY ++ F
Sbjct: 203 SSTDTQILP-FTCAYGLVLQVPMMHQTTEVNYGQFQDTAGHQVGVLELPYLGSAVSLFLV 261
Query: 67 DPANCSEFLTQVTTYLTALQI 87
P + L+ + +LTA I
Sbjct: 262 LPRDKDTPLSHIEPHLTASTI 282
>gi|57527756 hypothetical protein LOC54953 [Homo sapiens]
Length = 454
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 188 LADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASLIQHQALFSP 247
L D D+ES ++ D+ +++ IQ++ + ET ++S + QA
Sbjct: 357 LCDYKFDDESAEEIRDHFMEMLDHTIQIEDLE------IAEETNTACMSSSMNSQASLDN 410
Query: 248 TDPPPKKGPIQ 258
TD K PI+
Sbjct: 411 TDDEQPKQPIK 421
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 29.3 bits (64), Expect = 4.7
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 252 PKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSG------HFTRDCLAKRSRAPATTN 305
PK+GP +L+E ++ + K R T L L S +G H T+D A R+RAP ++
Sbjct: 172 PKEGPQELQEKKIQVLEEKVLRLTRTVLDLQSSLAGVSENLKHATQDD-ASRTRAPGLSS 230
>gi|7657261 Rap guanine nucleotide exchange factor 2 [Homo sapiens]
Length = 1499
Score = 29.3 bits (64), Expect = 4.7
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 105 QQLESCGIISGPDKSTLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPA 164
++L+S +I + IL SFG ++P M+ ++ KG ++ D
Sbjct: 168 EELDSWSVILNGSVEVTYPDGKAEILCMGNSFG------VSPTMDKEYMKGVMRTKVDDC 221
Query: 165 TFHLLAQNLICNETNQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPE 224
F +AQ C N Q EK + ++ E V ++ + +LD+ + +
Sbjct: 222 QFVCIAQQDYCRILN---QVEKNMQKVEEEGEIV---------MVKEHRELDRTGTRKGH 269
Query: 225 LLQSETQLPLLASLIQHQALFSPT 248
++ T L L++ ++ PT
Sbjct: 270 IVIKGTSERLTMHLVEEHSVVDPT 293
>gi|50345831 forkhead box J3 [Homo sapiens]
Length = 622
Score = 29.3 bits (64), Expect = 4.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 260 REGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRSRAPATTNNT 307
+E LP P KRAR E Y S +C+ S +P NT
Sbjct: 159 KEDVLPTRPKKRARSVERASTPYSIDSDSLGMECIISGSASPTLAINT 206
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 28.9 bits (63), Expect = 6.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 223 PELLQSETQLPLL--ASLIQHQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLC 280
P +LQ QLPL+ + +Q +P PPP + P+ E P P + ++E +
Sbjct: 338 PSILQVTPQLPLMGFVARVQENISDTPPPPPPVEEPV-FDESPPPPPPPEDYEEEEAAVV 396
Query: 281 LY 282
Y
Sbjct: 397 EY 398
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 28.9 bits (63), Expect = 6.1
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 35 ENTAKRGQVMPALATTVMPVPYSLEHLTQFHGDPANCSEFLTQVTTYLTALQISNPANDA 94
++ A Q + + T++ LE L Q H D + Q+T ALQ + DA
Sbjct: 689 DSAASLEQQLEQVKLTLLQRDQQLEALQQEHLD------LMKQLTLTQEALQSREQSLDA 742
Query: 95 QIKLFFDYLSQQL-ESCGIISGPDKSTLLKQYENLILEFQQSFGKPTKQEIN 145
++ +D L +L E G + + + L Q E +ILE K K+E++
Sbjct: 743 -LQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELD 793
>gi|226246595 speedy homolog E6 [Homo sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 219 HSDRPELLQSETQLPLLASLIQHQALFSPTDPPPKKGPIQL-----REGQLPLTPAKRAR 273
HS P ++ +++PLL + L+ T+P +K ++ R QL + RAR
Sbjct: 293 HSMNPRARKNRSRIPLLRK--RRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR 350
Query: 274 QQETQLCLYCSQSGHF 289
+ +Q+ L+ + HF
Sbjct: 351 KNRSQIVLFQKRRFHF 366
>gi|239743311 PREDICTED: similar to speedy homolog A isoform 1 [Homo
sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 219 HSDRPELLQSETQLPLLASLIQHQALFSPTDPPPKKGPIQL-----REGQLPLTPAKRAR 273
HS P ++ +++PLL + L+ T+P +K ++ R QL + RAR
Sbjct: 293 HSMNPRARKNRSRIPLLRK--RRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR 350
Query: 274 QQETQLCLYCSQSGHF 289
+ +Q+ L+ + HF
Sbjct: 351 KNRSQIVLFQKRRFHF 366
>gi|239743297 PREDICTED: speedy homolog E6 [Homo sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 219 HSDRPELLQSETQLPLLASLIQHQALFSPTDPPPKKGPIQL-----REGQLPLTPAKRAR 273
HS P ++ +++PLL + L+ T+P +K ++ R QL + RAR
Sbjct: 293 HSMNPRARKNRSRIPLLRK--RRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR 350
Query: 274 QQETQLCLYCSQSGHF 289
+ +Q+ L+ + HF
Sbjct: 351 KNRSQIVLFQKRRFHF 366
>gi|239508994 PREDICTED: similar to speedy homolog A isoform 7 [Homo
sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 219 HSDRPELLQSETQLPLLASLIQHQALFSPTDPPPKKGPIQL-----REGQLPLTPAKRAR 273
HS P ++ +++PLL + L+ T+P +K ++ R QL + RAR
Sbjct: 293 HSMNPRARKNRSRIPLLRK--RRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR 350
Query: 274 QQETQLCLYCSQSGHF 289
+ +Q+ L+ + HF
Sbjct: 351 KNRSQIVLFQKRRFHF 366
>gi|71979927 speedy homolog E2 [Homo sapiens]
Length = 258
Score = 28.5 bits (62), Expect = 7.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 219 HSDRPELLQSETQLPLLASLIQHQALFSPTDPPPKKGPIQL-----REGQLPLTPAKRAR 273
HS P ++ +++PLL + L+ T+P +K ++ R QL + RAR
Sbjct: 149 HSMNPRARKNRSRIPLLRK--RRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR 206
Query: 274 QQETQLCLYCSQSGHF 289
+ +Q+ L+ + HF
Sbjct: 207 KNRSQIVLFQKRRFHF 222
>gi|157694524 plexin D1 [Homo sapiens]
Length = 1925
Score = 28.5 bits (62), Expect = 7.9
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 60 HLTQFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDKS 119
+LT+ +FL + + +++ P +K FFD+L +Q E G IS PD
Sbjct: 1703 YLTRLLSTKGTLQKFLDDLFKAILSIREDKPP--LAVKYFFDFLEEQAEKRG-ISDPD-- 1757
Query: 120 TLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLI 174
L ++ P + +N L N +F + + A ++AQ I
Sbjct: 1758 ---------TLHIWKTNSLPLRFWVNILKNPQFVFDIDKTDHIDACLSVIAQAFI 1803
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,493,701
Number of Sequences: 37866
Number of extensions: 567946
Number of successful extensions: 1896
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1879
Number of HSP's gapped (non-prelim): 30
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.