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Search of human proteins with 166235180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo
sapiens]
(569 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo ... 1148 0.0
gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo ... 696 0.0
gi|238908495 similar to pleckstrin homology domain protein (5V32... 35 0.24
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 35 0.24
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 35 0.24
gi|66730423 hypothetical protein LOC389384 [Homo sapiens] 34 0.32
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 34 0.41
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 34 0.41
gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo... 32 1.2
gi|38176300 nestin [Homo sapiens] 32 2.0
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 31 2.7
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 31 2.7
gi|81295809 pericentrin [Homo sapiens] 31 2.7
gi|110227629 translin-associated factor X interacting protein 1 ... 31 2.7
gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens] 31 3.5
gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens] 30 4.6
gi|222136634 tetratricopeptide repeat domain 26 isoform 1 [Homo ... 30 5.9
gi|222136605 tetratricopeptide repeat domain 26 isoform 2 [Homo ... 30 5.9
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 30 7.8
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 30 7.8
>gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo
sapiens]
Length = 569
Score = 1148 bits (2970), Expect = 0.0
Identities = 569/569 (100%), Positives = 569/569 (100%)
Query: 1 MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60
MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA
Sbjct: 1 MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60
Query: 61 AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE
Sbjct: 61 AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
Query: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180
ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY
Sbjct: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180
Query: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240
DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS
Sbjct: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240
Query: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300
EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR
Sbjct: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300
Query: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIRAYLHDLKRAKMGLGGM 360
LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIRAYLHDLKRAKMGLGGM
Sbjct: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIRAYLHDLKRAKMGLGGM 360
Query: 361 PDRNHLACAKADLEEVVRVCPGFKAYLDIGQVYYYMGVDAVQELLAVDEAALNQALVFLA 420
PDRNHLACAKADLEEVVRVCPGFKAYLDIGQVYYYMGVDAVQELLAVDEAALNQALVFLA
Sbjct: 361 PDRNHLACAKADLEEVVRVCPGFKAYLDIGQVYYYMGVDAVQELLAVDEAALNQALVFLA 420
Query: 421 KAGESELGATLPELQLLRGKCLRIKGEDANAAACFKRAVELDDAGSSHTDGFGCLLEALL 480
KAGESELGATLPELQLLRGKCLRIKGEDANAAACFKRAVELDDAGSSHTDGFGCLLEALL
Sbjct: 421 KAGESELGATLPELQLLRGKCLRIKGEDANAAACFKRAVELDDAGSSHTDGFGCLLEALL 480
Query: 481 AQWSQAQLSDGELGREVDAWLRRAQDKYPAARLRQELQRVWRGHTDEVLGLARALVAQGR 540
AQWSQAQLSDGELGREVDAWLRRAQDKYPAARLRQELQRVWRGHTDEVLGLARALVAQGR
Sbjct: 481 AQWSQAQLSDGELGREVDAWLRRAQDKYPAARLRQELQRVWRGHTDEVLGLARALVAQGR 540
Query: 541 PALVRLLFETMEREGEGASAPRDRRAVSF 569
PALVRLLFETMEREGEGASAPRDRRAVSF
Sbjct: 541 PALVRLLFETMEREGEGASAPRDRRAVSF 569
>gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo
sapiens]
Length = 372
Score = 696 bits (1797), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60
MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA
Sbjct: 1 MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60
Query: 61 AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE
Sbjct: 61 AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
Query: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180
ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY
Sbjct: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180
Query: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240
DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS
Sbjct: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240
Query: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300
EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR
Sbjct: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300
Query: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAK 340
LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAK
Sbjct: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAK 340
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 34.7 bits (78), Expect = 0.24
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 44 RDLKLQREGLRQELQLAAA------PQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHP 97
++L++++E +++EL+L A ++ +RHL + LEEL ++ LE+ E+
Sbjct: 206 QELRMEQEQIKRELELTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKTLEMLEENE 265
Query: 98 GNLNAWANLAHVYGRLGQEEEEEACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAH 157
+L AN Q E+ ++L + E+ + QL + LAE+
Sbjct: 266 NHLQTLAN---------QSEQPPPSGGLHSNLRQIEEKMQ-----QLLEEKLLAEKRMKE 311
Query: 158 GFDVGCASPEERARGLAAGIALYDKALGYGQQIPMEEKRGWYFTMATLYIRLD 210
+ A EER + AL + Q++ E+++ A + +R+D
Sbjct: 312 NEERSRALEEEREFYSSQSQALQNSL----QELTAEKQQAERELKAEVKVRMD 360
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 34.7 bits (78), Expect = 0.24
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 38/171 (22%)
Query: 228 NRTLALLRQVLKSEDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKA 287
++ LA R ++ +PRH AW LGM+ +++ FS M F KA
Sbjct: 624 DKALACFRNAIRV-NPRHYN-AWYGLGMIYYKQEKFSLAEMH--------------FQKA 667
Query: 288 IEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIRAYL 347
++I +L + + + L K + A+ T N A+ + DP+ C K H + L
Sbjct: 668 LDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI--DPK---NPLC---KFHRASVL 719
Query: 348 HDLKRAKMGLGGMPDRNHLACAKADLEEVVRVCPGFK-AYLDIGQVYYYMG 397
++ K L +LEE+ ++ P Y IG+VY +G
Sbjct: 720 FANEKYKSAL-------------QELEELKQIVPKESLVYFLIGKVYKKLG 757
Score = 32.7 bits (73), Expect = 0.92
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 71 LLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
LLG EELD+A CF +P + NAW L +Y
Sbjct: 612 LLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 651
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 34.7 bits (78), Expect = 0.24
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 38/171 (22%)
Query: 228 NRTLALLRQVLKSEDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKA 287
++ LA R ++ +PRH AW LGM+ +++ FS M F KA
Sbjct: 618 DKALACFRNAIRV-NPRHYN-AWYGLGMIYYKQEKFSLAEMH--------------FQKA 661
Query: 288 IEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIRAYL 347
++I +L + + + L K + A+ T N A+ + DP+ C K H + L
Sbjct: 662 LDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI--DPK---NPLC---KFHRASVL 713
Query: 348 HDLKRAKMGLGGMPDRNHLACAKADLEEVVRVCPGFK-AYLDIGQVYYYMG 397
++ K L +LEE+ ++ P Y IG+VY +G
Sbjct: 714 FANEKYKSAL-------------QELEELKQIVPKESLVYFLIGKVYKKLG 751
Score = 32.7 bits (73), Expect = 0.92
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 71 LLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
LLG EELD+A CF +P + NAW L +Y
Sbjct: 606 LLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 645
>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
Length = 652
Score = 34.3 bits (77), Expect = 0.32
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 106 LAHVYGRLGQEEEEEACAARLADLMGLAEEPE---AAGDPQLRAAR------CLAEQGYA 156
+ + + R G EE E + R G+++ PE AAG+P LR +QG+
Sbjct: 103 MLNFFVRTGPEEPRERASRRPRGKEGISQHPEPLEAAGEPALRKKAHHDKKPSRKKQGHK 162
Query: 157 -HGFDVGCASPEERARGLAAGIALYDKALGYGQQIPMEEKRG 197
H +V A+ ++ ARG G++ AL G+ +RG
Sbjct: 163 KHAAEVTKAAQDQEARGREEGLSKAAAALRSGEADLGPARRG 204
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 33.9 bits (76), Expect = 0.41
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 63 PQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQ 115
P VR LG L L+EA+ C+L+ P AW+NL V+ G+
Sbjct: 144 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196
Score = 30.4 bits (67), Expect = 4.6
Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 35/196 (17%)
Query: 286 KAIEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIR- 344
+A+ ++ N + LA ++Y G D+AI T A+++ P AYC A
Sbjct: 240 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFP-DAYCNLANALKEK 296
Query: 345 --------AYLHDLKRAKMGLGGMPDRNHLACAKADLEEVVR-------VCPGF-KAYLD 388
Y L+ + + ++ + ++EE VR V P F A+ +
Sbjct: 297 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 356
Query: 389 IGQVYYYMGVDAVQELLAVDEAALNQALVFLAKAGESELGATLPELQLLRGKCLRIKGED 448
+ V G +QE L + A+ + F S +G TL E+Q ++G
Sbjct: 357 LASVLQQQG--KLQEALMHYKEAIRISPTF--ADAYSNMGNTLKEMQDVQG--------- 403
Query: 449 ANAAACFKRAVELDDA 464
A C+ RA++++ A
Sbjct: 404 --ALQCYTRAIQINPA 417
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 33.9 bits (76), Expect = 0.41
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 63 PQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQ 115
P VR LG L L+EA+ C+L+ P AW+NL V+ G+
Sbjct: 154 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206
Score = 30.4 bits (67), Expect = 4.6
Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 35/196 (17%)
Query: 286 KAIEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKIHIR- 344
+A+ ++ N + LA ++Y G D+AI T A+++ P AYC A
Sbjct: 250 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFP-DAYCNLANALKEK 306
Query: 345 --------AYLHDLKRAKMGLGGMPDRNHLACAKADLEEVVR-------VCPGF-KAYLD 388
Y L+ + + ++ + ++EE VR V P F A+ +
Sbjct: 307 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 366
Query: 389 IGQVYYYMGVDAVQELLAVDEAALNQALVFLAKAGESELGATLPELQLLRGKCLRIKGED 448
+ V G +QE L + A+ + F S +G TL E+Q ++G
Sbjct: 367 LASVLQQQG--KLQEALMHYKEAIRISPTF--ADAYSNMGNTLKEMQDVQG--------- 413
Query: 449 ANAAACFKRAVELDDA 464
A C+ RA++++ A
Sbjct: 414 --ALQCYTRAIQINPA 427
>gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo
sapiens]
Length = 1724
Score = 32.3 bits (72), Expect = 1.2
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 426 ELGATLPELQLLRGKCLRIKGEDANAAACFKRAVELDDAGSSHTDGFGCLLEALLAQWSQ 485
+L AT+ LQ +R R++ E FK +++DDA S + EA+
Sbjct: 1625 DLIATMLVLQFIR---TRLEKE----GIVFKSLMKMDDASISRNIPWA--FEAI------ 1669
Query: 486 AQLSDGELGREVDAWLRRAQDKYPAARLRQELQRVWRGHTDEVLGL 531
++ W+RR + +YP+ R EL W T ++LGL
Sbjct: 1670 ---------KQASEWVRRTEGQYPSICPRLELGNDWDSATKQLLGL 1706
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 31.6 bits (70), Expect = 2.0
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 473 GCLLEALLAQWSQAQLSDGELGREVDAWLRRA-----QDKYPAARL----RQELQRVWRG 523
GC+ E W EL R ++A+L R Q++ +A L Q WR
Sbjct: 3 GCMGEESFQMW--------ELNRRLEAYLARVKALEEQNELLSAELGGLRAQSADTSWRA 54
Query: 524 HTDEVLGLARALVAQ 538
H D+ L RALV Q
Sbjct: 55 HADDELAALRALVDQ 69
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 31.2 bits (69), Expect = 2.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 397 GVDAVQELLAVDEAALNQALVFLAKAGESELGATLPELQLLRGKCLRIKGEDANAAACFK 456
G +ELL V + L++ V ++KA L LQ++R +CL K A + K
Sbjct: 31 GFQTAEELLEVKPSELSKE-VGISKA------EALETLQIIRRECLTNKPRYAGTSESHK 83
Query: 457 RAVELDDAGSSHTDGF 472
+ L+ HT GF
Sbjct: 84 KCTALELLEQEHTQGF 99
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 31.2 bits (69), Expect = 2.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 397 GVDAVQELLAVDEAALNQALVFLAKAGESELGATLPELQLLRGKCLRIKGEDANAAACFK 456
G +ELL V + L++ V ++KA L LQ++R +CL K A + K
Sbjct: 31 GFQTAEELLEVKPSELSKE-VGISKA------EALETLQIIRRECLTNKPRYAGTSESHK 83
Query: 457 RAVELDDAGSSHTDGF 472
+ L+ HT GF
Sbjct: 84 KCTALELLEQEHTQGF 99
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 31.2 bits (69), Expect = 2.7
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 365 HLACAKADLEEVVRVCPGFKAYLDIGQVYYY---MGVDAVQELLAVDEAALNQALVFLAK 421
++A +A++E++ F+A L + + +DA+ + A A L L+ LA+
Sbjct: 1841 NVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALAR 1900
Query: 422 AGES------ELGATLPELQLLRGKCLRIKGEDANAAACFKRA-VELD 462
+ GA PELQ LR +C R+ + F R VELD
Sbjct: 1901 IRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELD 1948
>gi|110227629 translin-associated factor X interacting protein 1
[Homo sapiens]
Length = 658
Score = 31.2 bits (69), Expect = 2.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 180 YDKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSE--EQKRLPAFNRTLALLRQV 237
Y K +G QQ P + Y Y+R + + L+LG++ ++ RL + +
Sbjct: 28 YRKRVGSCQQHPFRTAKPQYLEELENYLRKELLLLDLGTDSTQELRLQPYREIFEFFIED 87
Query: 238 LKSEDPRHRALAWCYLGMLLERKD 261
K+ P ++ Y GML +++
Sbjct: 88 FKTYKPLLSSIKNAYEGMLAHQRE 111
>gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens]
Length = 1564
Score = 30.8 bits (68), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 72 LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
+G A LE+ D+A+ + + A P L AW LA++Y
Sbjct: 46 IGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLY 84
>gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens]
Length = 1121
Score = 30.4 bits (67), Expect = 4.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 72 LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
LG + LEEL EA + E + N WA LA V ++G++ E E
Sbjct: 1039 LGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKVGRQLEAE 1087
>gi|222136634 tetratricopeptide repeat domain 26 isoform 1 [Homo
sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 72 LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEEA 121
+G AF+L + A E + E N W NLA Y LG ++ EA
Sbjct: 63 IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
>gi|222136605 tetratricopeptide repeat domain 26 isoform 2 [Homo
sapiens]
Length = 487
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 72 LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEEA 121
+G AF+L + A E + E N W NLA Y LG ++ EA
Sbjct: 63 IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 29.6 bits (65), Expect = 7.8
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 51 EGLRQELQLAAAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
+G+ E+++ AV+ + D A EVA N +A +A+
Sbjct: 237 QGVANEVEVQGVAHEDAVQGIANE--------DAAHGITNEVAAHGIANEDAAQGIANED 288
Query: 111 GRLGQEEEEEACAARLADLM-GLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEER 169
G E+ D + G+A+E A G AA +A+ AHG A+
Sbjct: 289 AAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDAAHAIAKPDAAHGIANEVATQGIA 348
Query: 170 ARGLAAGIALYDKALGYGQQI 190
+A GIA D A G +++
Sbjct: 349 TEDVADGIANEDAAHGVAKEV 369
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 29.6 bits (65), Expect = 7.8
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 23 GHFHLEMQLNFEPRSP--APQRARDLKLQREGLRQELQLAAAP 63
G FH E Q P+ P PQ AR + L R GL+Q L A P
Sbjct: 999 GFFHPEGQPQRLPQPPEVGPQPARKVTLTRGGLQQPPHLPAGP 1041
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,360,081
Number of Sequences: 37866
Number of extensions: 1028794
Number of successful extensions: 2430
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 71
length of query: 569
length of database: 18,247,518
effective HSP length: 108
effective length of query: 461
effective length of database: 14,157,990
effective search space: 6526833390
effective search space used: 6526833390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.