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Search of human proteins with 165932346
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens]
(592 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens] 1241 0.0
gi|30425482 ring finger protein 180 isoform 2 [Homo sapiens] 840 0.0
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 52 2e-06
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 47 4e-05
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 47 4e-05
gi|239755486 PREDICTED: tripartite motif-containing protein 64C-... 46 8e-05
gi|239755484 PREDICTED: tripartite motif-containing protein 64C-... 46 8e-05
gi|239750044 PREDICTED: tripartite motif-containing protein 64C-... 46 8e-05
gi|239750042 PREDICTED: tripartite motif-containing protein 64C-... 46 8e-05
gi|239744355 PREDICTED: tripartite motif-containing protein 64C-... 46 8e-05
gi|239744353 PREDICTED: tripartite motif-containing protein 64C-... 46 8e-05
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 46 8e-05
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 46 1e-04
gi|210147600 tripartite motif-containing 64 [Homo sapiens] 45 2e-04
gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo sap... 45 2e-04
gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo sap... 45 2e-04
gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo ... 45 2e-04
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 45 2e-04
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 45 2e-04
gi|225903455 tripartite motif-containing 77 [Homo sapiens] 45 2e-04
gi|21071052 helicase-like transcription factor [Homo sapiens] 45 2e-04
gi|21071054 helicase-like transcription factor [Homo sapiens] 45 2e-04
gi|8923898 zinc finger protein 313 [Homo sapiens] 44 3e-04
gi|169202375 PREDICTED: tripartite motif-containing protein 64B-... 44 4e-04
gi|22749269 ring finger protein 129 [Homo sapiens] 44 5e-04
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 44 5e-04
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 44 5e-04
gi|62865604 tripartite motif protein 31 [Homo sapiens] 43 0.001
gi|46397375 ring finger protein 220 [Homo sapiens] 43 0.001
gi|88953346 PREDICTED: Tripartite motif-containing protein 43-li... 42 0.001
>gi|165932346 ring finger protein 180 isoform 1 [Homo sapiens]
Length = 592
Score = 1241 bits (3210), Expect = 0.0
Identities = 592/592 (100%), Positives = 592/592 (100%)
Query: 1 MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW 60
MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW
Sbjct: 1 MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW 60
Query: 61 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT 120
HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT
Sbjct: 61 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT 120
Query: 121 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE 180
DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE
Sbjct: 121 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE 180
Query: 181 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT 240
ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT
Sbjct: 181 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT 240
Query: 241 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH 300
LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH
Sbjct: 241 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH 300
Query: 301 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS 360
ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS
Sbjct: 301 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS 360
Query: 361 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED 420
ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED
Sbjct: 361 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED 420
Query: 421 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV 480
NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV
Sbjct: 421 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV 480
Query: 481 FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQF 540
FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQF
Sbjct: 481 FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQF 540
Query: 541 PHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF 592
PHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF
Sbjct: 541 PHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF 592
>gi|30425482 ring finger protein 180 isoform 2 [Homo sapiens]
Length = 416
Score = 840 bits (2169), Expect = 0.0
Identities = 409/409 (100%), Positives = 409/409 (100%)
Query: 1 MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW 60
MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW
Sbjct: 1 MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW 60
Query: 61 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT 120
HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT
Sbjct: 61 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT 120
Query: 121 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE 180
DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE
Sbjct: 121 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE 180
Query: 181 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT 240
ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT
Sbjct: 181 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT 240
Query: 241 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH 300
LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH
Sbjct: 241 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH 300
Query: 301 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS 360
ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS
Sbjct: 301 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS 360
Query: 361 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHM 409
ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHM
Sbjct: 361 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHM 409
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 421 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV 480
N Y ++ + ++C +C D+ YM C H FC C+ +DN CP C ++ +
Sbjct: 125 NSYEDKSNDFVCPICFDMIEEAYMT-KCGHSFCYKCIHQSLEDN---NRCPKCNYVVDNI 180
Query: 481 ------FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPL 515
F EL K F ++ K+ S +N +W +
Sbjct: 181 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQI 221
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 47.4 bits (111), Expect = 4e-05
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 426 EKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCR 474
+K IC++CL+ Y NP + PC H FCE CL+ + + CP+CR
Sbjct: 17 DKQFLICSICLERYKNPKVL-PCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 47.4 bits (111), Expect = 4e-05
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 426 EKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCR 474
+K IC++CL+ Y NP + PC H FCE CL+ + + CP+CR
Sbjct: 44 DKQFLICSICLERYKNPKVL-PCLHTFCERCLQNYIPAHSLTLSCPVCR 91
>gi|239755486 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 447
Score = 46.2 bits (108), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CPLCR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNV 68
>gi|239755484 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 450
Score = 46.2 bits (108), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CPLCR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNV 68
>gi|239750044 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 447
Score = 46.2 bits (108), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CPLCR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNV 68
>gi|239750042 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 450
Score = 46.2 bits (108), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CPLCR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNV 68
>gi|239744355 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 447
Score = 46.2 bits (108), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CPLCR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNV 68
>gi|239744353 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 450
Score = 46.2 bits (108), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CPLCR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNV 68
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 46.2 bits (108), Expect = 8e-05
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 421 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV 480
N Y ++ + ++C +C D+ YM C H FC C+ +DN CP C ++ +
Sbjct: 125 NSYEDKSNDFVCPICFDMIEEAYMT-KCGHSFCYKCIHQSLEDN---NRCPKCNYVVDNI 180
Query: 481 ------FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPL 515
F EL K F ++ K+ SN +W +
Sbjct: 181 DHLYPNFLVNELILKQKQRFEEKRFKL----DHSNGHRWQI 217
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 45.8 bits (107), Expect = 1e-04
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 415 MSTDEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCR 474
M+ D + +D + C VC +V P C H+FC C T ++ S CPLCR
Sbjct: 1 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRE--SGAHCPLCR 58
Query: 475 TIISR 479
++R
Sbjct: 59 GNVTR 63
>gi|210147600 tripartite motif-containing 64 [Homo sapiens]
Length = 449
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CP CR I + F T +
Sbjct: 10 QNELICCICVNYFIDP-VTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKISEKPNFNTNV 68
>gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 432 CAVCLDVYFNPY-MCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQ 483
C++C D +P +C C H FC PCL L +D + CP+CR I +++F+
Sbjct: 15 CSICTDYLTDPVTIC--CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFK 65
>gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 432 CAVCLDVYFNPY-MCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQ 483
C++C D +P +C C H FC PCL L +D + CP+CR I +++F+
Sbjct: 15 CSICTDYLTDPVTIC--CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFK 65
>gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo
sapiens]
Length = 450
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 432 CAVCLDVYFNPY-MCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQ 483
C++C D +P +C C H FC PCL L +D + CP+CR I +++F+
Sbjct: 15 CSICTDYLTDPVTIC--CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFK 65
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 426 EKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCR 474
+K +C++CLD Y P + PC H FCE CL+ + CP+CR
Sbjct: 16 DKQFLVCSICLDRYQCPKVL-PCLHTFCERCLQNYIPAQSLTLSCPVCR 63
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 426 EKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCR 474
+K +C++CLD Y P + PC H FCE CL+ + CP+CR
Sbjct: 16 DKQFLVCSICLDRYQCPKVL-PCLHTFCERCLQNYIPAQSLTLSCPVCR 63
>gi|225903455 tripartite motif-containing 77 [Homo sapiens]
Length = 450
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 432 CAVCLDVYFNPY-MCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQ 483
C++C D +P +C C H FC PCL L +D + CP+CR I +++F+
Sbjct: 15 CSICTDYLTDPVTIC--CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFK 65
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 432 CAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTII 477
CA+CLD P + + C H+FC+PC+ + ++ CPLCR I
Sbjct: 760 CAICLDSLTVPVITH-CAHVFCKPCICQVIQNEQPHAKCPLCRNDI 804
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 432 CAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTII 477
CA+CLD P + + C H+FC+PC+ + ++ CPLCR I
Sbjct: 760 CAICLDSLTVPVITH-CAHVFCKPCICQVIQNEQPHAKCPLCRNDI 804
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 44.3 bits (103), Expect = 3e-04
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 22/116 (18%)
Query: 424 AEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQ 483
A+ + C VCL+VY P PC H+FC CL+ K P C +CR+ ++
Sbjct: 21 ADPLGRFTCPVCLEVYEKPVQV-PCGHVFCSACLQECLK--PKKPVCGVCRSALAPGVRA 77
Query: 484 TELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQ 539
EL ++ S + CRK F L R H A ++ Q
Sbjct: 78 VELE------------------RQIESTETSCHGCRKNFFL-SKIRSHVATCSKYQ 114
>gi|169202375 PREDICTED: tripartite motif-containing protein
64B-like [Homo sapiens]
Length = 449
Score = 43.9 bits (102), Expect = 4e-04
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTEL 486
++ IC +C++ + +P + C H FC PCL +++ + CP CR + F T L
Sbjct: 10 QNELICCICVNYFIDP-VTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKTSEKPNFNTNL 68
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 43.5 bits (101), Expect = 5e-04
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 432 CAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQ--TELNNA 489
C +CL+ +P + C H FC CL KD + PCP+CR F+ +L N
Sbjct: 16 CPICLEYLKDP-VTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCFPYKSFRRNPQLRNL 74
Query: 490 TKTFFTKEYLKIKQSFQKSNS 510
T+ + + K+ QK N+
Sbjct: 75 TEIAKQLQIRRSKRKRQKENA 95
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 43.5 bits (101), Expect = 5e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 416 STDEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRT 475
S++ E + ++ C +CLD + + C H+FC PCL + P+ CP+C+
Sbjct: 23 SSNGAGESGGQDSTFECNICLDTAKDAVISL-CGHLFCWPCLHQWLETRPNRQVCPVCKA 81
Query: 476 IISR 479
ISR
Sbjct: 82 GISR 85
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 43.5 bits (101), Expect = 5e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 416 STDEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRT 475
S++ E + ++ C +CLD + + C H+FC PCL + P+ CP+C+
Sbjct: 23 SSNGAGESGGQDSTFECNICLDTAKDAVISL-CGHLFCWPCLHQWLETRPNRQVCPVCKA 81
Query: 476 IISR 479
ISR
Sbjct: 82 GISR 85
>gi|62865604 tripartite motif protein 31 [Homo sapiens]
Length = 425
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 427 KDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISR--VFFQT 484
++ IC +CLD+ P + C H FC C+ + + + CPLC+T + + + F +
Sbjct: 11 QEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIRFNS 69
Query: 485 ELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLF 525
L N ++ ++ S +S + P ++ FH F
Sbjct: 70 LLRN-----LVEKIQALQASEVQSKRKEATCPRHQEMFHYF 105
>gi|46397375 ring finger protein 220 [Homo sapiens]
Length = 566
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 428 DSYICAVCLDVYFNPYMCYPCHHIFCEPC-LRTLAKDNPSSTPCPLCRTI 476
D Y C +C+D Y P C H+ CE C LRTL + CP C TI
Sbjct: 510 DRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLG----AKKLCPQCNTI 555
>gi|88953346 PREDICTED: Tripartite motif-containing protein 43-like
protein 1 [Homo sapiens]
Length = 446
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 418 DEDNEYAEEKDSYICAVCLDVYFNPY-MCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTI 476
D D +A +K+ C +CL+ +P +C C H FC PCL ++ S CP CR
Sbjct: 2 DSDFSHAFQKE-LTCVICLNYLVDPVTIC--CGHSFCRPCLCLSWEEAQSPANCPACREP 58
Query: 477 ISRVFFQTEL 486
++ F+T +
Sbjct: 59 SPKMDFKTNI 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,680,620
Number of Sequences: 37866
Number of extensions: 1093578
Number of successful extensions: 3917
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 3739
Number of HSP's gapped (non-prelim): 313
length of query: 592
length of database: 18,247,518
effective HSP length: 108
effective length of query: 484
effective length of database: 14,157,990
effective search space: 6852467160
effective search space used: 6852467160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.