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Search of human proteins with 16418441
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16418441 terminal deoxynucleotidyltransferase interacting
factor 1 [Homo sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16418441 terminal deoxynucleotidyltransferase interacting fac... 672 0.0
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens] 37 0.032
gi|187608615 tyrosine kinase 2 [Homo sapiens] 32 0.60
gi|27764882 leprecan-like 1 isoform a [Homo sapiens] 32 1.0
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 31 1.7
gi|156564240 coiled-coil domain containing 104 [Homo sapiens] 31 1.7
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 30 2.3
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 30 2.3
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 30 2.3
gi|4504487 histidine rich calcium binding protein precursor [Hom... 30 2.3
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 30 2.3
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 30 3.0
gi|223029510 echinoderm microtubule associated protein like 4 is... 30 3.9
gi|19923497 echinoderm microtubule associated protein like 4 iso... 30 3.9
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 30 3.9
gi|73695936 ADAM metallopeptidase with thrombospondin type 1 mot... 29 5.0
gi|21265034 ADAM metallopeptidase with thrombospondin type 1 mot... 29 5.0
gi|5729790 CCCTC-binding factor [Homo sapiens] 29 6.6
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 29 6.6
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 29 6.6
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 29 6.6
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 28 8.6
gi|13375646 leucine rich repeat and fibronectin type III domain ... 28 8.6
gi|154354983 regulating synaptic membrane exocytosis 2 isoform a... 28 8.6
gi|154354981 regulating synaptic membrane exocytosis 2 isoform b... 28 8.6
gi|73476377 LBXCOR1 homolog [Homo sapiens] 28 8.6
gi|145199237 transcription elongation factor B polypeptide 3 bin... 28 8.6
>gi|16418441 terminal deoxynucleotidyltransferase interacting factor
1 [Homo sapiens]
Length = 329
Score = 672 bits (1734), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF 60
MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF
Sbjct: 1 MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF 60
Query: 61 TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS 120
TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS
Sbjct: 61 TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS 120
Query: 121 CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR 180
CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR
Sbjct: 121 CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR 180
Query: 181 AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF 240
AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF
Sbjct: 181 AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF 240
Query: 241 KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP 300
KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP
Sbjct: 241 KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP 300
Query: 301 SWMVEKMRKYMETLRTENEHRAVEAPPQT 329
SWMVEKMRKYMETLRTENEHRAVEAPPQT
Sbjct: 301 SWMVEKMRKYMETLRTENEHRAVEAPPQT 329
>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
Length = 196
Score = 36.6 bits (83), Expect = 0.032
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 154 EEC---AHRGSPLPKKRKGRPPGHILSSDRAAAGMV--WKPKSCEPIRREGPKWDPARL 207
EEC AHR LP R P G + S + W P S +PI ++GP+W+ R+
Sbjct: 116 EECVKMAHRAGLLPNHRPRLPEGVVPKSKPQLNRYLTRWAPGSVKPIYKKGPRWNRVRM 174
>gi|187608615 tyrosine kinase 2 [Homo sapiens]
Length = 1187
Score = 32.3 bits (72), Expect = 0.60
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 58 TSFTDPAISMDLLRAVLQPSI--NEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQ 115
TSF D I R + Q S ++ VF ++++ FQ L+ +Q++
Sbjct: 209 TSFKD-CIPRSFRRHIRQHSALTRLRLRNVFRRFLRDFQPGRLS-----------QQMVM 256
Query: 116 EACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAE-EECAHRGS------PLPKKRK 168
+ LE+ F G + +P + H ++ QAE E C R S P P+
Sbjct: 257 VKYLATLERLAPRF--GTERVP-VCH----LRLLAQAEGEPCYIRDSGVAPTDPGPESAA 309
Query: 169 GRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGT 228
G P +L + G+ W P E + EG R +++ F ++A+KA+G
Sbjct: 310 GPPTHEVLVT--GTGGIQWWPVEEEVNKEEGSSGSSGRNPQASLFGKKAKAHKAVGQPAD 367
Query: 229 RGRIYIKHPHLFKYAADPQD-KHWLAEQH 256
R R L+ Y D +D H + ++H
Sbjct: 368 RPR-----EPLWAYFCDFRDITHVVLKEH 391
>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
Length = 708
Score = 31.6 bits (70), Expect = 1.0
Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 131 DGEKVIPRLTHELPGIKRGRQAEEECAHRGS---PLPKKRKGRPPGHILSSDRAAAGMVW 187
D E+ + L L +R R+ CA + PLP G PG L R+ G
Sbjct: 59 DYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPPPPGEGPGAELPLFRSLLGRAR 118
Query: 188 KPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFK------ 241
+SCE R GP R++E R R YIK L K
Sbjct: 119 CYRSCETQRLGGPA-SRHRVSEDVRSDFQRRVPY-----NYLQRAYIKLNQLEKAVEAAH 172
Query: 242 --YAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIR 275
+ A+P+ + RAT G A L++ + +
Sbjct: 173 TFFVANPEHMEMQQNIENYRATAGVEALQLVDREAK 208
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 30.8 bits (68), Expect = 1.7
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 106 EEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLTH-ELPGIKRGRQAEEECAHRGSPLP 164
E+ EQL+ + LE+A + V+ RL + PG G RG+P
Sbjct: 6208 EQCHREQLVAAVEDTTLERAD---QEVTSVLKRLLGPKAPGPSTGDLTGPGPCPRGAPAL 6264
Query: 165 KKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALG 224
++ +PP + + A A P+ +P+ EGP+ +P + + + + R A
Sbjct: 6265 QETGSQPP--VTGTSEAPAV---PPRVPQPLLHEGPEQEPEAIARAQEWTVPIRMEGAAW 6319
Query: 225 MG-GTRGRIYIKHPHLFK 241
G GT ++ H H+ +
Sbjct: 6320 PGAGTGELLWDVHSHVVR 6337
>gi|156564240 coiled-coil domain containing 104 [Homo sapiens]
Length = 342
Score = 30.8 bits (68), Expect = 1.7
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 21/106 (19%)
Query: 55 QMTTSFTDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLI 114
Q + T P +A+LQP + E T+F A+ V+ N+ ++ A ++I
Sbjct: 78 QFQEACTSPLAKTHTSQAILQPVLAAEDFTIFK---------AMMVQKNIEMQLQAIRII 128
Query: 115 QE---ACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRG--RQAEEE 155
QE CL +DG V+ L HE I R R+++EE
Sbjct: 129 QERNGVLPDCL-------TDGSDVVSDLEHEEMKILREVLRKSKEE 167
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 159 RGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGP 200
RGSP PK KG PG I S D A G K EP R P
Sbjct: 1168 RGSPGPKGEKGE-PGSIFSPDGGALGPAQKGAKGEPGFRGPP 1208
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 159 RGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGP 200
RGSP PK KG PG I S D A G K EP R P
Sbjct: 753 RGSPGPKGEKGE-PGSIFSPDGGALGPAQKGAKGEPGFRGPP 793
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 159 RGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGP 200
RGSP PK KG PG I S D A G K EP R P
Sbjct: 933 RGSPGPKGEKGE-PGSIFSPDGGALGPAQKGAKGEPGFRGPP 973
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 131 DGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDRA 181
+ E+V L H+ P ++ Q +EE H K+ PPGH + DR+
Sbjct: 426 EDEEVSAELGHQAPSHRQSHQ-DEETGHGQRGSIKEMSHHPPGHTVVKDRS 475
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 109 DAEQLIQEACRSCLEQAKLLFSDGEK--VIPRLTHELPGIKRGRQAEEECAHRGSPLPKK 166
D E+ I++ CL Q L ++ E + PR G+ E+ G+ + KK
Sbjct: 43 DQEEKIEDVASHCLPQKDLYTAEEEAATLFPRKMTSHNGM-------EDSGGGGTGVKKK 95
Query: 167 RKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPK 201
RK + PG D+ A K + +P R+ PK
Sbjct: 96 RKKKEPG-----DQEGAAKGSKDREPKPKRKREPK 125
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]
Length = 106
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 148 RGRQAEEECAHRGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWD 203
RGR +++ G P PK+ +GRP G S AA + + R KWD
Sbjct: 29 RGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWD 84
>gi|223029510 echinoderm microtubule associated protein like 4
isoform b [Homo sapiens]
Length = 923
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 173 GHILSSDRAAAGMVWKPKSCEPIRREGPKW-----DPARLNESTTFVLGSRANKALGMGG 227
G +L+ D ++W + EP +GPK + ++ + F L N L GG
Sbjct: 410 GDVLTGDSGGVMLIWSKTTVEPTPGKGPKGVYQISKQIKAHDGSVFTLCQMRNGMLLTGG 469
Query: 228 TRGRIYIKHPH 238
+ R I H
Sbjct: 470 GKDRKIILWDH 480
>gi|19923497 echinoderm microtubule associated protein like 4
isoform a [Homo sapiens]
Length = 981
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 173 GHILSSDRAAAGMVWKPKSCEPIRREGPKW-----DPARLNESTTFVLGSRANKALGMGG 227
G +L+ D ++W + EP +GPK + ++ + F L N L GG
Sbjct: 468 GDVLTGDSGGVMLIWSKTTVEPTPGKGPKGVYQISKQIKAHDGSVFTLCQMRNGMLLTGG 527
Query: 228 TRGRIYIKHPH 238
+ R I H
Sbjct: 528 GKDRKIILWDH 538
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 29.6 bits (65), Expect = 3.9
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 114 IQEACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPG 173
++E C+ +E K + + K++ RL+ E ++ EEE R + L + +G P
Sbjct: 3989 LKEVCKHSIEYFKGISGETLKLVDRLSEEEKKMQSELSDEEESTSRNTSLSETSRGGQPS 4048
Query: 174 HILSSDR 180
S R
Sbjct: 4049 VTTKSAR 4055
>gi|73695936 ADAM metallopeptidase with thrombospondin type 1 motif,
13 isoform 2 preproprotein [Homo sapiens]
Length = 1371
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 171 PPGHILSSDRAA--AGMVWKPKSCEPI------RREGPKWDPAR 206
P GH+++SD AA AG+ W P S + R WDP R
Sbjct: 244 PSGHVMASDGAAPRAGLAWSPCSRRQLLSLLSAGRARCVWDPPR 287
>gi|21265034 ADAM metallopeptidase with thrombospondin type 1 motif,
13 isoform 1 preproprotein [Homo sapiens]
Length = 1427
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 171 PPGHILSSDRAA--AGMVWKPKSCEPI------RREGPKWDPAR 206
P GH+++SD AA AG+ W P S + R WDP R
Sbjct: 244 PSGHVMASDGAAPRAGLAWSPCSRRQLLSLLSAGRARCVWDPPR 287
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 28.9 bits (63), Expect = 6.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 102 DNVGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLT----HELPGIKRGRQAEEECA 157
+N GE +++ + RS E + SD E P L E P ++ + E +
Sbjct: 586 ENGGETKKSKRGRKRKMRSKKEDS----SDSENAEPDLDDNEDEEEPAVEIEPEPEPQPV 641
Query: 158 HRGSPLPKKRKGRPPG 173
P KKR+GRPPG
Sbjct: 642 TPAPPPAKKRRGRPPG 657
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 148 RGRQAEEECAHRGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPAR 206
RGR +++ G P PK+ +GRP G S AA K E + P+ P +
Sbjct: 29 RGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAA-----QKKAEATGEKRPRGRPRK 82
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 28.9 bits (63), Expect = 6.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 191 SCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGR 231
SC+ R P W R + TF + R N+ G GG RGR
Sbjct: 374 SCDDNRERRPTWAEERRLNAETFGIPLRPNR--GRGGYRGR 412
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 28.9 bits (63), Expect = 6.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 191 SCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGR 231
SC+ R P W R + TF + R N+ G GG RGR
Sbjct: 374 SCDDNRERRPTWAEERRLNAETFGIPLRPNR--GRGGYRGR 412
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 28.5 bits (62), Expect = 8.6
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 2 GATGDAEQPRGPSGAERG--GLEL------GDAGAAGQLVLTNPWNIMIKHR--QVQRRG 51
GA G+ QP + AERG G E G+AG L + W + HR Q +RR
Sbjct: 760 GAPGEEGQPSHAALAERGPKGHEAAQEWSQGEAGKGASLPSSASWRCALWHRVWQGRRRA 819
Query: 52 RR 53
RR
Sbjct: 820 RR 821
>gi|13375646 leucine rich repeat and fibronectin type III domain
containing 3 [Homo sapiens]
Length = 628
Score = 28.5 bits (62), Expect = 8.6
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 137 PRLTHELP--GIKRGRQAEEECAHRGSPLPKKRKGRPPGHIL-SSDRAAA 183
P +TH P + GR A C G P P+ R P G +L +S RA A
Sbjct: 296 PVVTHRSPPLAVPAGRPAALRCRAVGDPEPRVRWVSPQGRLLGNSSRARA 345
>gi|154354983 regulating synaptic membrane exocytosis 2 isoform a
[Homo sapiens]
Length = 1349
Score = 28.5 bits (62), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 257 HMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLE 292
H GGKM + + +LA++ +Y C D+++E
Sbjct: 499 HKSKKGGKMRQISLSSSEEELASTPEYTSCDDVEIE 534
>gi|154354981 regulating synaptic membrane exocytosis 2 isoform b
[Homo sapiens]
Length = 1163
Score = 28.5 bits (62), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 257 HMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLE 292
H GGKM + + +LA++ +Y C D+++E
Sbjct: 307 HKSKKGGKMRQISLSSSEEELASTPEYTSCDDVEIE 342
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 28.5 bits (62), Expect = 8.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 160 GSPLPKKRKGRPP-GHILSSDRAAAGMVWKPKSCEP 194
GSP P++R G PP G D AA +V +P+ P
Sbjct: 671 GSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPP 706
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 28.5 bits (62), Expect = 8.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 287 LDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAVEAP 326
L+L+L + S + + R+Y E L T EHR+ EAP
Sbjct: 86 LELELVNQAIEAVRSEVELEQRRYRELLETTREHRSAEAP 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,800,802
Number of Sequences: 37866
Number of extensions: 664865
Number of successful extensions: 1990
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 31
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.