Guide to the Human Genome
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Name: IGF1 Sequence: fasta or formatted (158aa) NCBI GI: 163659899
Description:

insulin-like growth factor 1 isoform 1 preproprotein

Referenced in:

Growth Hormone and Related Hormones
Receptor Tyrosine Kinases

Other entries for this name:
alt prot [153aa] insulin-like growth factor 1 isoform 4 preproprotein
alt prot [137aa] insulin-like growth factor 1 isoform 2 preproprotein
alt prot [195aa] insulin-like growth factor 1 isoform 3 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         10           1
 C cysteine            6.3         10           2
 D aspartate           3.8          6           1
 E glutamate           3.8          6           2
 F phenylalanine       6.3         10           1
 G glycine             5.7          9           1
 H histidine           1.9          3           1
 I isoleucine          1.3          2           1
 K lysine              8.2         13           1
 L leucine             8.9         14           2
 M methionine          3.2          5           1
 N asparagine          1.9          3           1
 P proline             5.7          9           2
 Q glutamine           4.4          7           1
 R arginine            7.6         12           2
 S serine             10.1         16           3
 T threonine           8.2         13           1
 V valine              3.2          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   insulin-like growth factor 1 isoform 1 preproprotei... 
IGF1                  0.954   insulin-like growth factor 1 isoform 3 preproprotei...
IGF1                  0.840   insulin-like growth factor 1 isoform 4 preproprotein...
IGF1                  0.690   insulin-like growth factor 1 isoform 2 preproprotei...
IGF2                  0.225   insulin-like growth factor 2 isoform 1 precursor [Hom...
IGF2                  0.225   insulin-like growth factor 2 isoform 1 precursor [H...
IGF2                  0.225   insulin-like growth factor 2 isoform 2 
INS                   0.078   proinsulin precursor 
INS-IGF2              0.039   insulin- insulin-like growth factor 2 
RLN1                  0.013   relaxin 1 preproprotein 
SFRS12IP1             0.013   P18SRP protein 
NR0B1                 0.010   nuclear receptor subfamily 0, group B, member 1 [Homo...
ATF6                  0.010   activating transcription factor 6 
LRSAM1                0.010   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.010   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.010   leucine rich repeat and sterile alpha motif containi...
ZP2                   0.010   zona pellucida glycoprotein 2 preproprotein 
STK33                 0.010   serine/threonine kinase 33 
LOC100291075          0.007   PREDICTED: hypothetical protein XP_002346651 
LOC100288832          0.007   PREDICTED: hypothetical protein XP_002342488 
MSL1                  0.007   hampin 
KIAA0232              0.007   hypothetical protein LOC9778 
KIAA0232              0.007   hypothetical protein LOC9778 
PPP1R12C              0.007   protein phosphatase 1, regulatory subunit 12C 
SEMG1                 0.007   semenogelin I isoform b preproprotein 
SEMG1                 0.007   semenogelin I isoform a preproprotein 
MRGPRX3               0.007   MAS-related GPR, member X3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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