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Search of human proteins with 16306548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16306548 seryl-tRNA synthetase [Homo sapiens]
(514 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16306548 seryl-tRNA synthetase [Homo sapiens] 1032 0.0
gi|8923421 seryl-tRNA synthetase 2 isoform b precursor [Homo sap... 168 1e-41
gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo s... 168 1e-41
gi|197304746 RUN domain containing 3B isoform c [Homo sapiens] 36 0.096
gi|197304744 RUN domain containing 3B isoform b [Homo sapiens] 36 0.096
gi|19923090 RUN domain containing 3B isoform a [Homo sapiens] 36 0.096
gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo sapi... 33 0.48
gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo ... 33 0.62
gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo s... 33 0.62
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 32 1.4
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 32 1.4
gi|62241040 leucine rich repeat containing 8 family, member A [H... 32 1.8
gi|187829877 leucine rich repeat containing 8 family, member A [... 32 1.8
gi|187829871 leucine rich repeat containing 8 family, member A [... 32 1.8
gi|66529203 hypothetical protein LOC57714 [Homo sapiens] 32 1.8
gi|4503765 fragile X mental retardation 1 [Homo sapiens] 31 2.4
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 31 2.4
gi|77812672 exosome component 9 isoform 1 [Homo sapiens] 30 4.0
gi|77812670 exosome component 9 isoform 2 [Homo sapiens] 30 4.0
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 30 5.3
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 30 5.3
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 30 5.3
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 30 5.3
gi|33356172 nibrin [Homo sapiens] 29 9.0
gi|20070344 threonyl-tRNA synthetase 2, mitochondrial [Homo sapi... 29 9.0
gi|61102725 la related protein isoform 2 [Homo sapiens] 29 9.0
gi|39725634 la related protein isoform 1 [Homo sapiens] 29 9.0
>gi|16306548 seryl-tRNA synthetase [Homo sapiens]
Length = 514
Score = 1032 bits (2669), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC 60
Query: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
Sbjct: 61 SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE 120
Query: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
Sbjct: 121 RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF 180
Query: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH 360
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH 360
Query: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 420
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
Sbjct: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 420
Query: 421 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP 480
EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
Sbjct: 421 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP 480
Query: 481 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA 514
SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
Sbjct: 481 SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA 514
>gi|8923421 seryl-tRNA synthetase 2 isoform b precursor [Homo
sapiens]
Length = 518
Score = 168 bits (425), Expect = 1e-41
Identities = 101/342 (29%), Positives = 178/342 (52%), Gaps = 18/342 (5%)
Query: 123 KLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVR--KKYSHVDLVVMVDGF 180
+LE + + ++ N HP VP+ ++ +V + GD V + H+++ +D
Sbjct: 158 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 215
Query: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
++ + V+G R Y+L+G L+ L+ + L RG+ P+ P +R V +
Sbjct: 216 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 275
Query: 241 SQFD-EELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 299
+ ++Y + D + + L T+E +A D + DLP++ ST
Sbjct: 276 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 327
Query: 300 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPY 359
C+R E + G++ RG++RVH F K+E F + P +S ++ EE ++ E LG+ +
Sbjct: 328 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHF 386
Query: 360 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 419
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + QT+ +
Sbjct: 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE--AGE 443
Query: 420 VEFVHMLNATMCATTRTICAILE-NYQTEKGITVPEKLKEFM 460
++F H +NAT CA R + A+LE N Q + + VP L+ ++
Sbjct: 444 LQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 485
>gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo
sapiens]
Length = 520
Score = 168 bits (425), Expect = 1e-41
Identities = 101/342 (29%), Positives = 178/342 (52%), Gaps = 18/342 (5%)
Query: 123 KLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVR--KKYSHVDLVVMVDGF 180
+LE + + ++ N HP VP+ ++ +V + GD V + H+++ +D
Sbjct: 160 QLEEQFYLQALKLPNQTHPDVPVGDESQA--RVLHMVGDKPVFSFQPRGHLEIGEKLDII 217
Query: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
++ + V+G R Y+L+G L+ L+ + L RG+ P+ P +R V +
Sbjct: 218 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMT 277
Query: 241 SQFD-EELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLST 299
+ ++Y + D + + L T+E +A D + DLP++ ST
Sbjct: 278 PNANPSQIYNI--------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSST 329
Query: 300 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPY 359
C+R E + G++ RG++RVH F K+E F + P +S ++ EE ++ E LG+ +
Sbjct: 330 CYRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHF 388
Query: 360 HIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDK 419
++++ + L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + QT+ +
Sbjct: 389 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE--AGE 445
Query: 420 VEFVHMLNATMCATTRTICAILE-NYQTEKGITVPEKLKEFM 460
++F H +NAT CA R + A+LE N Q + + VP L+ ++
Sbjct: 446 LQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 487
>gi|197304746 RUN domain containing 3B isoform c [Homo sapiens]
Length = 407
Score = 35.8 bits (81), Expect = 0.096
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 183 EKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPI---YTPFFMRKEVMQEVAQ 239
E GA+V G L G+L+ L + L+ G G P YTP+ + +Q
Sbjct: 157 EDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGSFPAVIDYTPYL---KYIQSSDS 213
Query: 240 LSQFDEELYKVIGKGSEKSDDNSYDEKYLI 269
+S +EEL + GSE S + +L+
Sbjct: 214 ISSDEEELRTLGSSGSESSTPENVGPPFLM 243
>gi|197304744 RUN domain containing 3B isoform b [Homo sapiens]
Length = 456
Score = 35.8 bits (81), Expect = 0.096
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 183 EKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPI---YTPFFMRKEVMQEVAQ 239
E GA+V G L G+L+ L + L+ G G P YTP+ + +Q
Sbjct: 157 EDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGSFPAVIDYTPYL---KYIQSSDS 213
Query: 240 LSQFDEELYKVIGKGSEKSDDNSYDEKYLI 269
+S +EEL + GSE S + +L+
Sbjct: 214 ISSDEEELRTLGSSGSESSTPENVGPPFLM 243
>gi|19923090 RUN domain containing 3B isoform a [Homo sapiens]
Length = 473
Score = 35.8 bits (81), Expect = 0.096
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 183 EKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPI---YTPFFMRKEVMQEVAQ 239
E GA+V G L G+L+ L + L+ G G P YTP+ + +Q
Sbjct: 174 EDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGSFPAVIDYTPYL---KYIQSSDS 230
Query: 240 LSQFDEELYKVIGKGSEKSDDNSYDEKYLI 269
+S +EEL + GSE S + +L+
Sbjct: 231 ISSDEEELRTLGSSGSESSTPENVGPPFLM 260
>gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo
sapiens]
Length = 1369
Score = 33.5 bits (75), Expect = 0.48
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 34 DQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTAD 93
++L K ++ R F A LNKLK + K+E D E EN++S +D +A
Sbjct: 477 EELNKMETNKPRDLFIAKLLNKLKQQQQQQQQHSENKRENSEDPEESWENLVSDEDFSAL 536
Query: 94 ALANLKVSQIKKVRLL 109
+L + V ++ VR L
Sbjct: 537 SLESANVEDLEPVRNL 552
>gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo
sapiens]
Length = 1004
Score = 33.1 bits (74), Expect = 0.62
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 431 CATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEG 490
C + T + ++ + E ++ M PGL +L V P P ++ + KKQ E
Sbjct: 565 CPASYTRFTTMLKHERARHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSAPKKQTEK 624
Query: 491 SKKKAA 496
+K KA+
Sbjct: 625 AKCKAS 630
>gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1100
Score = 33.1 bits (74), Expect = 0.62
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 431 CATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEG 490
C + T + ++ + E ++ M PGL +L V P P ++ + KKQ E
Sbjct: 661 CPASYTRFTTMLKHERARHENTEEPRRQEMDPGLSKLAFLVSPVPFRRKKNSAPKKQTEK 720
Query: 491 SKKKAA 496
+K KA+
Sbjct: 721 AKCKAS 726
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 32.0 bits (71), Expect = 1.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 220 YIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQP 275
Y I+ P +K+V ++V ++S EE ++ +G + + DE LI+T E+P
Sbjct: 1019 YDQIFAPKKKQKKVQEQVHKVSSRCEE-ESLLARGRSSAQNKQVDENSLISTKEEP 1073
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 32.0 bits (71), Expect = 1.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 220 YIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQP 275
Y I+ P +K+V ++V ++S EE ++ +G + + DE LI+T E+P
Sbjct: 1288 YDQIFAPKKKQKKVQEQVHKVSSRCEE-ESLLARGRSSAQNKQVDENSLISTKEEP 1342
>gi|62241040 leucine rich repeat containing 8 family, member A [Homo
sapiens]
Length = 810
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 51 DNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLI 110
D L +LK L + + K V D V LS ++ + + ++ +KK+ L
Sbjct: 538 DGLRELKRLKVLRLKSNLSKLPQVVTDVGVHLQKLSINN---EGTKLIVLNSLKKMANLT 594
Query: 111 DEAILKCDAERIKLEAERFENLREI 135
+ +++CD ERI NL+EI
Sbjct: 595 ELELIRCDLERIPHSIFSLHNLQEI 619
>gi|187829877 leucine rich repeat containing 8 family, member A
[Homo sapiens]
Length = 810
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 51 DNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLI 110
D L +LK L + + K V D V LS ++ + + ++ +KK+ L
Sbjct: 538 DGLRELKRLKVLRLKSNLSKLPQVVTDVGVHLQKLSINN---EGTKLIVLNSLKKMANLT 594
Query: 111 DEAILKCDAERIKLEAERFENLREI 135
+ +++CD ERI NL+EI
Sbjct: 595 ELELIRCDLERIPHSIFSLHNLQEI 619
>gi|187829871 leucine rich repeat containing 8 family, member A
[Homo sapiens]
Length = 810
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 51 DNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLI 110
D L +LK L + + K V D V LS ++ + + ++ +KK+ L
Sbjct: 538 DGLRELKRLKVLRLKSNLSKLPQVVTDVGVHLQKLSINN---EGTKLIVLNSLKKMANLT 594
Query: 111 DEAILKCDAERIKLEAERFENLREI 135
+ +++CD ERI NL+EI
Sbjct: 595 ELELIRCDLERIPHSIFSLHNLQEI 619
>gi|66529203 hypothetical protein LOC57714 [Homo sapiens]
Length = 1063
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 276 IAALHRDEWLRPEDLPIKYAGLS-TCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHD 334
+A H+D W +PED GLS + FR+++ DT + QF + +Q + S
Sbjct: 704 LAPRHKDAWRQPEDTWAALEGLSFSPFREQM----LDTSSLL---QFMREKQHLLSIDEP 756
Query: 335 -NKSWEM---FEEMITTAEEFYQSLG-IPYHIVNIVSG 367
+SW ++ E F + LG P HI++ +SG
Sbjct: 757 LFRSWFSLLPLSHLVMYMENFIEHLGRFPAHILDCLSG 794
>gi|4503765 fragile X mental retardation 1 [Homo sapiens]
Length = 632
Score = 31.2 bits (69), Expect = 2.4
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 75 GDDESVPENVLSFDDLTADALA---NLKVSQIKKVRLLIDEAILKCDAERIKLEAERFEN 131
G+D+ + SF + D + NL I K LI E + K R+++EAE +N
Sbjct: 266 GEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN 325
Query: 132 LREIGNLLHPSVPISNDEDV 151
+ + ++ P+ SN+ V
Sbjct: 326 VPQEEEIMPPNSLPSNNSRV 345
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 304 EVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVN 363
EVG H + G ++H +K+ F+YS H + +M+ +++ G Y V+
Sbjct: 337 EVGDHLTEASG--KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVD 394
Query: 364 -IVSGSLNHAASKKLDLEAWF 383
V G H A K + F
Sbjct: 395 GSVRGEERHLAIKNFGQQPIF 415
>gi|77812672 exosome component 9 isoform 1 [Homo sapiens]
Length = 456
Score = 30.4 bits (67), Expect = 4.0
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 60 CSKTIGEKMKK-----KEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAI 114
CSK G K+ + + + +D+ V + F A+++AN +++ K + ID +
Sbjct: 250 CSKIAGVKVAEITELILKALENDQKVRKEGGKFG--FAESIANQRITAFKMEKAPIDTSD 307
Query: 115 LKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHV--- 171
++ AE I EAE + L P + VE WGD +K
Sbjct: 308 VEEKAEEIIAEAEPPSEVVSTPVLWTPGT-----AQIGEGVENSWGDLEDSEKEDDEGGG 362
Query: 172 DLVVMVDGFEGEKGAVVA 189
D +++DG + + G V+
Sbjct: 363 DQAIILDGIKMDTGVEVS 380
>gi|77812670 exosome component 9 isoform 2 [Homo sapiens]
Length = 439
Score = 30.4 bits (67), Expect = 4.0
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 60 CSKTIGEKMKK-----KEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAI 114
CSK G K+ + + + +D+ V + F A+++AN +++ K + ID +
Sbjct: 250 CSKIAGVKVAEITELILKALENDQKVRKEGGKFG--FAESIANQRITAFKMEKAPIDTSD 307
Query: 115 LKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHV--- 171
++ AE I EAE + L P + VE WGD +K
Sbjct: 308 VEEKAEEIIAEAEPPSEVVSTPVLWTPGT-----AQIGEGVENSWGDLEDSEKEDDEGGG 362
Query: 172 DLVVMVDGFEGEKGAVVA 189
D +++DG + + G V+
Sbjct: 363 DQAIILDGIKMDTGVEVS 380
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 23 QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPE 82
QE ++ LVD+ ++ + + R RA+ L++ + E++K +EP + + E
Sbjct: 325 QELTAENEKLVDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIE 384
Query: 83 NVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLE----AERFENLREIGNL 138
L L+ + ++ +LL + L C +++ E E + L+E
Sbjct: 385 -------LEQKCTGILEQGRFEREKLLNIQQQLTCSLRKVEEENQGALEMIKRLKEENEK 437
Query: 139 LHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEK 184
L+ + + +N + + +C V + ++ + +GEK
Sbjct: 438 LNEFLELERHN--NNMMAKTLEECRVTLEGLKMENGSLKSHLQGEK 481
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 23 QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPE 82
QE ++ LVD+ ++ + + R RA+ L++ + E++K +EP + + E
Sbjct: 325 QELTAENEKLVDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIE 384
Query: 83 NVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLE----AERFENLREIGNL 138
L L+ + ++ +LL + L C +++ E E + L+E
Sbjct: 385 -------LEQKCTGILEQGRFEREKLLNIQQQLTCSLRKVEEENQGALEMIKRLKEENEK 437
Query: 139 LHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEK 184
L+ + + +N + + +C V + ++ + +GEK
Sbjct: 438 LNEFLELERHN--NNMMAKTLEECRVTLEGLKMENGSLKSHLQGEK 481
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 23 QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPE 82
QE ++ LVD+ ++ + + R RA+ L++ + E++K +EP + + E
Sbjct: 406 QELTAENEKLVDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIE 465
Query: 83 NVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLE----AERFENLREIGNL 138
L L+ + ++ +LL + L C +++ E E + L+E
Sbjct: 466 -------LEQKCTGILEQGRFEREKLLNIQQQLTCSLRKVEEENQGALEMIKRLKEENEK 518
Query: 139 LHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEK 184
L+ + + +N + + +C V + ++ + +GEK
Sbjct: 519 LNEFLELERHN--NNMMAKTLEECRVTLEGLKMENGSLKSHLQGEK 562
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 30.0 bits (66), Expect = 5.3
Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 23 QEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPE 82
QE ++ LVD+ ++ + + R RA+ L++ + E++K +EP + + E
Sbjct: 406 QELTAENEKLVDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKIIE 465
Query: 83 NVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLE----AERFENLREIGNL 138
L L+ + ++ +LL + L C +++ E E + L+E
Sbjct: 466 -------LEQKCTGILEQGRFEREKLLNIQQQLTCSLRKVEEENQGALEMIKRLKEENEK 518
Query: 139 LHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEK 184
L+ + + +N + + +C V + ++ + +GEK
Sbjct: 519 LNEFLELERHN--NNMMAKTLEECRVTLEGLKMENGSLKSHLQGEK 562
>gi|33356172 nibrin [Homo sapiens]
Length = 754
Score = 29.3 bits (64), Expect = 9.0
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 389 FRELVSCSNCTDYQAR----RLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENY 444
+ LV+CS+C D + + ++ G E H++ ++ T +TICA++
Sbjct: 110 YEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALI--- 166
Query: 445 QTEKGITVPEKLKEFM--------PPGLQELIP 469
+ I PE EF+ PP ++ P
Sbjct: 167 -CGRPIVKPEYFTEFLKAVESKKQPPQIESFYP 198
>gi|20070344 threonyl-tRNA synthetase 2, mitochondrial [Homo
sapiens]
Length = 718
Score = 29.3 bits (64), Expect = 9.0
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYK 249
GS + +G V+ AL+ + RG+ + TP ++ ++ + E+++
Sbjct: 320 GSCFFLPRGTRVY--NALVAFIRAEYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFA 377
Query: 250 VIGKGSEKSDDNSYDEKYLIATSEQPIAAL----------HRDEWLRPEDLPIKYAGLST 299
V GS++ + D+ T + + HR R +LP++ A
Sbjct: 378 VQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPAHCLMFAHRPRSWR--ELPLRLADFGA 435
Query: 300 CFRQEVGSHGRDTRGIFRVHQFEKIEQFVY 329
R E G+ R+ F++ + ++
Sbjct: 436 LHRAEASG---GLGGLTRLRCFQQDDAHIF 462
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 29.3 bits (64), Expect = 9.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 38 KADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALAN 97
K + E+ + + +N K+ N+ S+ + + + PV ++ VP F + DALAN
Sbjct: 694 KFEPEYSQIKQEVENFKKV-NMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALAN 752
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 29.3 bits (64), Expect = 9.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 38 KADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALAN 97
K + E+ + + +N K+ N+ S+ + + + PV ++ VP F + DALAN
Sbjct: 617 KFEPEYSQIKQEVENFKKV-NMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALAN 675
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,367,624
Number of Sequences: 37866
Number of extensions: 886552
Number of successful extensions: 2852
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2829
Number of HSP's gapped (non-prelim): 34
length of query: 514
length of database: 18,247,518
effective HSP length: 107
effective length of query: 407
effective length of database: 14,195,856
effective search space: 5777713392
effective search space used: 5777713392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.